Protein–RNA interactions for Protein: Q04839

GFD1, mRNA transport factor GFD1, yeastyeast

Known RBP Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
GFD1Q04839 NSR1YGR159C 1245 nt22.45■■□□□ 1.18
GFD1Q04839 YML009W-BYML009W-B 477 nt22.38■■□□□ 1.17
GFD1Q04839 NOP1YDL014W 984 nt21.64■■□□□ 1.05
GFD1Q04839 MDJ1YFL016C 1536 nt20.22■□□□□ 0.83
GFD1Q04839 YKL036CYKL036C 393 nt19.7■□□□□ 0.74
GFD1Q04839 SRX1YKL086W 384 nt18.89■□□□□ 0.61
GFD1Q04839 Q0297Q0297 156 nt18.84■□□□□ 0.61
GFD1Q04839 YJL027CYJL027C 417 nt18.63■□□□□ 0.57
GFD1Q04839 YCR051WYCR051W 669 nt17.92■□□□□ 0.46
GFD1Q04839 SCS3YGL126W 1143 nt17.8■□□□□ 0.44
GFD1Q04839 DBP2YNL112W 1641 nt17.76■□□□□ 0.43
GFD1Q04839 YBR190WYBR190W 312 nt17.3■□□□□ 0.36
GFD1Q04839 TRN1tP(UGG)A 72 nt17.25■□□□□ 0.35
GFD1Q04839 SUF9tP(UGG)F 72 nt17.25■□□□□ 0.35
GFD1Q04839 SUF8tP(UGG)H 72 nt17.25■□□□□ 0.35
GFD1Q04839 tP(UGG)LtP(UGG)L 72 nt17.25■□□□□ 0.35
GFD1Q04839 SUF7tP(UGG)M 72 nt17.25■□□□□ 0.35
GFD1Q04839 tP(UGG)N1tP(UGG)N1 72 nt17.25■□□□□ 0.35
GFD1Q04839 tP(UGG)N2tP(UGG)N2 72 nt17.25■□□□□ 0.35
GFD1Q04839 tP(UGG)O1tP(UGG)O1 72 nt17.25■□□□□ 0.35
GFD1Q04839 SUF11tP(UGG)O2 72 nt17.25■□□□□ 0.35
GFD1Q04839 CCC1YLR220W 969 nt17.08■□□□□ 0.32
GFD1Q04839 YOL085CYOL085C 342 nt17.07■□□□□ 0.32
GFD1Q04839 RPP1BYDL130W 321 nt16.91■□□□□ 0.3
GFD1Q04839 RTC3YHR087W 336 nt16.91■□□□□ 0.3
GFD1Q04839 PKP1YIL042C 1185 nt16.85■□□□□ 0.29
GFD1Q04839 RVS167YDR388W 1449 nt16.67■□□□□ 0.26
GFD1Q04839 SCJ1YMR214W 1134 nt16.52■□□□□ 0.24
GFD1Q04839 tP(UGG)O3tP(UGG)O3 72 nt16.22■□□□□ 0.19
GFD1Q04839 PET122YER153C 765 nt16.2■□□□□ 0.18
GFD1Q04839 SHR5YOL110W 714 nt16.01■□□□□ 0.15
GFD1Q04839 SCR1SCR1 522 nt15.95■□□□□ 0.14
GFD1Q04839 PUT4YOR348C 1884 nt15.92■□□□□ 0.14
GFD1Q04839 ATS1YAL020C 1002 nt15.82■□□□□ 0.12
GFD1Q04839 URN1YPR152C 1398 nt15.73■□□□□ 0.11
GFD1Q04839 YDJ1YNL064C 1230 nt15.7■□□□□ 0.1
GFD1Q04839 RRN5YLR141W 1092 nt15.68■□□□□ 0.1
GFD1Q04839 DEP1YAL013W 1218 nt15.64■□□□□ 0.09
GFD1Q04839 ARE1YCR048W 1833 nt15.55■□□□□ 0.08
GFD1Q04839 OPI9YLR338W 858 nt15.54■□□□□ 0.08
GFD1Q04839 SAH1YER043C 1350 nt15.53■□□□□ 0.08
GFD1Q04839 SSA3YBL075C 1950 nt15.48■□□□□ 0.07
GFD1Q04839 RPN10YHR200W 807 nt15.45■□□□□ 0.06
GFD1Q04839 GAR1YHR089C 618 nt15.39■□□□□ 0.05
GFD1Q04839 POA1YBR022W 534 nt15.39■□□□□ 0.05
GFD1Q04839 YER088W-BYER088W-B 147 nt15.38■□□□□ 0.05
GFD1Q04839 YHR049C-AYHR049C-A 297 nt15.37■□□□□ 0.05
GFD1Q04839 YNL208WYNL208W 600 nt15.37■□□□□ 0.05
GFD1Q04839 RSB1YOR049C 1065 nt15.29■□□□□ 0.04
GFD1Q04839 BSC6YOL137W 1494 nt15.12■□□□□ 0.01
GFD1Q04839 PUN1YLR414C 792 nt15.1■□□□□ 0.01
GFD1Q04839 BUD23YCR047C 828 nt14.98□□□□□ -0.01
GFD1Q04839 YJR018WYJR018W 363 nt14.98□□□□□ -0.01
GFD1Q04839 PTC2YER089C 1395 nt14.96□□□□□ -0.02
GFD1Q04839 TIR1YER011W 765 nt14.89□□□□□ -0.03
GFD1Q04839 NAB2YGL122C 1578 nt14.81□□□□□ -0.04
GFD1Q04839 SSA1YAL005C 1929 nt14.76□□□□□ -0.05
GFD1Q04839 PST2YDR032C 597 nt14.7□□□□□ -0.06
GFD1Q04839 YJR120WYJR120W 351 nt14.69□□□□□ -0.06
GFD1Q04839 RPP2BYDR382W 333 nt14.62□□□□□ -0.07
GFD1Q04839 SPT5YML010W 3192 nt14.59□□□□□ -0.07
GFD1Q04839 FIS1YIL065C 468 nt14.59□□□□□ -0.07
GFD1Q04839 DAL1YIR027C 1383 nt14.57□□□□□ -0.08
GFD1Q04839 FPR4YLR449W 1179 nt14.53□□□□□ -0.08
GFD1Q04839 INM2YDR287W 879 nt14.47□□□□□ -0.09
GFD1Q04839 SRB2YHR041C 633 nt14.47□□□□□ -0.09
GFD1Q04839 PHO4YFR034C 939 nt14.43□□□□□ -0.1
GFD1Q04839 YBL100CYBL100C 315 nt14.31□□□□□ -0.12
GFD1Q04839 BDH2YAL061W 1254 nt14.27□□□□□ -0.13
GFD1Q04839 YPS1YLR120C 1710 nt14.24□□□□□ -0.13
GFD1Q04839 MEP2YNL142W 1500 nt14.21□□□□□ -0.13
GFD1Q04839 SSA4YER103W 1929 nt14.2□□□□□ -0.14
GFD1Q04839 WWM1YFL010C 636 nt14.19□□□□□ -0.14
GFD1Q04839 SHU1YHL006C 453 nt14.17□□□□□ -0.14
GFD1Q04839 FUN26YAL022C 1554 nt14.13□□□□□ -0.15
GFD1Q04839 YDR095CYDR095C 411 nt14.11□□□□□ -0.15
GFD1Q04839 YHR165W-AYHR165W-A 312 nt14.11□□□□□ -0.15
GFD1Q04839 YGR021WYGR021W 873 nt14.04□□□□□ -0.16
GFD1Q04839 YAL037C-BYAL037C-B 975 nt14.04□□□□□ -0.16
GFD1Q04839 TRM9YML014W 840 nt14.04□□□□□ -0.16
GFD1Q04839 LSM3YLR438C-A 270 nt14.02□□□□□ -0.17
GFD1Q04839 DCW1YKL046C 1350 nt13.99□□□□□ -0.17
GFD1Q04839 YKL097CYKL097C 411 nt13.99□□□□□ -0.17
GFD1Q04839 ALF1YNL148C 765 nt13.99□□□□□ -0.17
GFD1Q04839 YFL021C-AYFL021C-A 855 nt13.97□□□□□ -0.17
GFD1Q04839 HOM6YJR139C 1080 nt13.96□□□□□ -0.17
GFD1Q04839 CCT6YDR188W 1641 nt13.93□□□□□ -0.18
GFD1Q04839 MNP1YGL068W 585 nt13.87□□□□□ -0.19
GFD1Q04839 SUF2tP(AGG)C 72 nt13.84□□□□□ -0.19
GFD1Q04839 SUF10tP(AGG)N 72 nt13.84□□□□□ -0.19
GFD1Q04839 RPP2AYOL039W 321 nt13.84□□□□□ -0.19
GFD1Q04839 EMI2YDR516C 1503 nt13.8□□□□□ -0.2
GFD1Q04839 PTP1YDL230W 1008 nt13.8□□□□□ -0.2
GFD1Q04839 RKM5YLR137W 1104 nt13.77□□□□□ -0.21
GFD1Q04839 SIS1YNL007C 1059 nt13.77□□□□□ -0.21
GFD1Q04839 YMR090WYMR090W 684 nt13.74□□□□□ -0.21
GFD1Q04839 CAC2YML102W 1407 nt13.73□□□□□ -0.21
GFD1Q04839 YDL221WYDL221W 552 nt13.7□□□□□ -0.22
GFD1Q04839 BDF1YLR399C 2061 nt13.66□□□□□ -0.22
GFD1Q04839 YBR220CYBR220C 1683 nt13.63□□□□□ -0.23
Retrieved 100 of 7,029 protein–RNA pairs in 16 ms