RNA–Protein interactions for RNA: YDR494W

RSM28, Transcript of Mitochondrial ribosomal protein of the small subunit, yeast

Gene RSM28, Length 1,086 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RSM28	YDR494W	YAL037W	P39728	267 aa		2.82	□□□□□ -1.96
RSM28	YDR494W	OAZ1	Q02803	292 aa		2.82	□□□□□ -1.96
RSM28	YDR494W	MMR1	Q06324	491 aa		2.82	□□□□□ -1.96
RSM28	YDR494W	VPS54	Q12071	889 aa		2.82	□□□□□ -1.96
RSM28	YDR494W	MED2	Q12124	431 aa		2.82	□□□□□ -1.96
RSM28	YDR494W	BUG1	Q12191	341 aa		2.82	□□□□□ -1.96
RSM28	YDR494W	HRT3	Q12347	344 aa		2.82	□□□□□ -1.96
RSM28	YDR494W	ISA2	Q12425	185 aa		2.82	□□□□□ -1.96
RSM28	YDR494W	NAT1	P12945	854 aa	Known RBP	2.81	□□□□□ -1.96
RSM28	YDR494W	SPO12	P17123	173 aa		2.81	□□□□□ -1.96
RSM28	YDR494W	SLM4	P38247	162 aa		2.81	□□□□□ -1.96
RSM28	YDR494W	PAN6	P40459	309 aa		2.81	□□□□□ -1.96
RSM28	YDR494W	ZIM17	P42844	174 aa		2.81	□□□□□ -1.96
RSM28	YDR494W	RPT4	P53549	437 aa	Known RBP	2.81	□□□□□ -1.96
RSM28	YDR494W	CWC25	P53854	179 aa	Known RBP	2.81	□□□□□ -1.96
RSM28	YDR494W	OCA2	P53949	197 aa		2.81	□□□□□ -1.96
RSM28	YDR494W	CDC60	P26637	1090 aa	Known RBP	2.8	□□□□□ -1.96
RSM28	YDR494W	MPE1	P35728	441 aa	Known RBP	2.8	□□□□□ -1.96
RSM28	YDR494W	YBR056W	P38081	501 aa		2.8	□□□□□ -1.96
RSM28	YDR494W	MSG5	P38590	489 aa		2.8	□□□□□ -1.96
RSM28	YDR494W	MTM1	P53320	366 aa		2.8	□□□□□ -1.96
RSM28	YDR494W	RHO5	P53879	331 aa	Known RBP	2.8	□□□□□ -1.96
RSM28	YDR494W	APJ1	P53940	528 aa		2.8	□□□□□ -1.96
RSM28	YDR494W	AIM32	Q04689	311 aa		2.8	□□□□□ -1.96
RSM28	YDR494W	MTR10	Q99189	972 aa		2.8	□□□□□ -1.96
RSM28	YDR494W	ADH2	P00331	348 aa	Known RBP	2.79	□□□□□ -1.96
RSM28	YDR494W	NFT1	P0CE68	1218 aa		2.79	□□□□□ -1.96
RSM28	YDR494W	RPS8A	P0CX39	200 aa	Known RBP	2.79	□□□□□ -1.96
RSM28	YDR494W	RPS8B	P0CX40	200 aa	Known RBP	2.79	□□□□□ -1.96
RSM28	YDR494W	CPR2	P23285	205 aa		2.79	□□□□□ -1.96
RSM28	YDR494W	TCB2	P48231	1178 aa		2.79	□□□□□ -1.96
RSM28	YDR494W	PEX25	Q02969	394 aa		2.79	□□□□□ -1.96
RSM28	YDR494W	BCH1	Q05029	724 aa		2.79	□□□□□ -1.96
RSM28	YDR494W	YLR345W	Q06137	509 aa		2.79	□□□□□ -1.96
RSM28	YDR494W	SRL2	Q12020	392 aa		2.79	□□□□□ -1.96
RSM28	YDR494W	ATG34	Q12292	412 aa		2.79	□□□□□ -1.96
RSM28	YDR494W	YRM1	Q12340	786 aa		2.79	□□□□□ -1.96
RSM28	YDR494W	ADE4	P04046	510 aa	Known RBP	2.78	□□□□□ -1.96
RSM28	YDR494W	CYC3	P06182	269 aa		2.78	□□□□□ -1.96
RSM28	YDR494W	RAD57	P25301	460 aa		2.78	□□□□□ -1.96
RSM28	YDR494W	RVS161	P25343	265 aa	Known RBP	2.78	□□□□□ -1.96
RSM28	YDR494W	POP5	P28005	173 aa		2.78	□□□□□ -1.96
RSM28	YDR494W	JLP2	P40206	208 aa		2.78	□□□□□ -1.96
RSM28	YDR494W	SFH5	P47008	294 aa		2.78	□□□□□ -1.96
RSM28	YDR494W	AEP3	Q12089	606 aa		2.78	□□□□□ -1.96
RSM28	YDR494W	IMA3	P0CW40	589 aa		2.77	□□□□□ -1.97
RSM28	YDR494W	IMA4	P0CW41	589 aa		2.77	□□□□□ -1.97
RSM28	YDR494W	MDH1	P17505	334 aa	Known RBP RIP-Chip data	2.77	□□□□□ -1.97	not detected
RSM28	YDR494W	SER3	P40054	469 aa		2.77	□□□□□ -1.97
RSM28	YDR494W	VHS2	P40463	436 aa		2.77	□□□□□ -1.97
RSM28	YDR494W	URH1	Q04179	340 aa		2.77	□□□□□ -1.97
RSM28	YDR494W	IMA2	Q08295	589 aa		2.77	□□□□□ -1.97
RSM28	YDR494W	RBD2	Q12270	262 aa		2.77	□□□□□ -1.97
RSM28	YDR494W	SMC6	Q12749	1114 aa		2.77	□□□□□ -1.97
RSM28	YDR494W	COX3	P00420	269 aa		2.76	□□□□□ -1.97
RSM28	YDR494W	NAM2	P11325	894 aa		2.76	□□□□□ -1.97
RSM28	YDR494W	YCL068C	P25593	260 aa		2.76	□□□□□ -1.97
RSM28	YDR494W	KAR9	P32526	644 aa		2.76	□□□□□ -1.97
RSM28	YDR494W	HEL1	P36113	551 aa		2.76	□□□□□ -1.97
RSM28	YDR494W	ASC1	P38011	319 aa	Known RBP	2.76	□□□□□ -1.97
RSM28	YDR494W	ATP3	P38077	311 aa	Known RBP	2.76	□□□□□ -1.97
RSM28	YDR494W	CHK1	P38147	527 aa		2.76	□□□□□ -1.97
RSM28	YDR494W	SRP72	P38688	640 aa	Known RBP	2.76	□□□□□ -1.97
RSM28	YDR494W	TOM22	P49334	152 aa		2.76	□□□□□ -1.97
RSM28	YDR494W	YGR111W	P53265	400 aa		2.76	□□□□□ -1.97
RSM28	YDR494W	SNT309	Q06091	175 aa	Predicted RBP	2.76	□□□□□ -1.97
RSM28	YDR494W	RRP9	Q06506	573 aa	Known RBP	2.76	□□□□□ -1.97
RSM28	YDR494W	NDE2	Q07500	545 aa		2.76	□□□□□ -1.97
RSM28	YDR494W	IRC25	Q07951	179 aa		2.76	□□□□□ -1.97
RSM28	YDR494W	TPT1	Q12272	230 aa	Known RBP	2.76	□□□□□ -1.97
RSM28	YDR494W	ARO3	P14843	370 aa	Known RBP	2.75	□□□□□ -1.97
RSM28	YDR494W	NIP1	P32497	812 aa	Known RBP	2.75	□□□□□ -1.97
RSM28	YDR494W	CYS4	P32582	507 aa	Known RBP	2.75	□□□□□ -1.97
RSM28	YDR494W	VMA8	P32610	256 aa	Known RBP	2.75	□□□□□ -1.97
RSM28	YDR494W	RRP1	P35178	278 aa	Predicted RBP	2.75	□□□□□ -1.97
RSM28	YDR494W	MRPL10	P36520	322 aa		2.75	□□□□□ -1.97
RSM28	YDR494W	ZTA1	P38230	334 aa	Known RBP	2.75	□□□□□ -1.97
RSM28	YDR494W	GAT2	P40209	560 aa		2.75	□□□□□ -1.97
RSM28	YDR494W	YIL029C	P40538	142 aa		2.75	□□□□□ -1.97
RSM28	YDR494W	YPS6	P40583	537 aa		2.75	□□□□□ -1.97
RSM28	YDR494W	MDE1	P47095	244 aa		2.75	□□□□□ -1.97
RSM28	YDR494W	NUP116	Q02630	1113 aa		2.75	□□□□□ -1.97
RSM28	YDR494W	STD1	Q02794	444 aa		2.75	□□□□□ -1.97
RSM28	YDR494W	MMT1	Q03218	510 aa		2.75	□□□□□ -1.97
RSM28	YDR494W	CCE1	Q03702	353 aa		2.75	□□□□□ -1.97
RSM28	YDR494W	RPN9	Q04062	393 aa	Known RBP	2.75	□□□□□ -1.97
RSM28	YDR494W	WTM1	Q12363	437 aa	Known RBP	2.75	□□□□□ -1.97
RSM28	YDR494W	SNU66	Q12420	587 aa	Predicted RBP	2.75	□□□□□ -1.97
RSM28	YDR494W	RIM1	P32445	135 aa	Known RBP	2.74	□□□□□ -1.97
RSM28	YDR494W	PXA2	P34230	853 aa		2.74	□□□□□ -1.97
RSM28	YDR494W	OLA1	P38219	394 aa	Known RBP	2.74	□□□□□ -1.97
RSM28	YDR494W	COX14	P39103	70 aa		2.74	□□□□□ -1.97
RSM28	YDR494W	YER079W	P40052	210 aa	Known RBP	2.74	□□□□□ -1.97
RSM28	YDR494W	PIB2	P53191	635 aa		2.74	□□□□□ -1.97
RSM28	YDR494W	MTQ1	P53944	314 aa		2.74	□□□□□ -1.97
RSM28	YDR494W	PRP42	Q03776	544 aa	Known RBP	2.74	□□□□□ -1.97
RSM28	YDR494W	YMR027W	Q04371	470 aa		2.74	□□□□□ -1.97
RSM28	YDR494W	DCI1	Q08558	271 aa		2.74	□□□□□ -1.97
RSM28	YDR494W	RAX1	Q08760	435 aa		2.74	□□□□□ -1.97
RSM28	YDR494W	FDH1	Q08911	376 aa		2.74	□□□□□ -1.97

Retrieved 100 of 5,963 RNA–protein pairs in 59.6 ms