RNA–Protein interactions for RNA: ENSMUST00000003857.6

Shkbp1-201, Transcript of SH3KBP1-binding protein 1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shkbp1, Length 2,358 nt, Biotype protein coding, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1-201ENSMUST00000003857 Trav13d-4A0A0G2JFX3 110 aa13.08□□□□□ -0.32
Shkbp1-201ENSMUST00000003857 Igkv1-117A0A140T8M0 119 aa13.08□□□□□ -0.32
Shkbp1-201ENSMUST00000003857 Ndufa12Q7TMF3 145 aaKnown RBP13.08□□□□□ -0.32
Shkbp1-201ENSMUST00000003857 Pfn2Q9JJV2 140 aa13.08□□□□□ -0.32
Shkbp1-201ENSMUST00000003857 Spink4O35679 86 aa13.08□□□□□ -0.32
Shkbp1-201ENSMUST00000003857 SbsponQ3UPR9 264 aa13.07□□□□□ -0.32
Shkbp1-201ENSMUST00000003857 5730596B20RikQ8BQ08 205 aa13.07□□□□□ -0.32
Shkbp1-201ENSMUST00000003857 Tomm7Q9D173 55 aa13.06□□□□□ -0.32
Shkbp1-201ENSMUST00000003857 Trav14d-3-dv8A0A075B619 120 aa13.06□□□□□ -0.32
Shkbp1-201ENSMUST00000003857 Cox6b1P56391 86 aaKnown RBP13.06□□□□□ -0.32
Shkbp1-201ENSMUST00000003857 4930524J08RikQ9CUJ5 163 aa13.06□□□□□ -0.32
Shkbp1-201ENSMUST00000003857 MtorQ9JLN9 2549 aa13.04□□□□□ -0.32
Shkbp1-201ENSMUST00000003857 B230359F08RikA0A0B4J1K3 109 aa13.04□□□□□ -0.32
Shkbp1-201ENSMUST00000003857 Nhlrc1Q8BR37 401 aa13.04□□□□□ -0.32
Shkbp1-201ENSMUST00000003857 Zfp951A0A087WRH0 451 aa13.03□□□□□ -0.32
Shkbp1-201ENSMUST00000003857 Gm904Q3V2L5 102 aa13.03□□□□□ -0.32
Shkbp1-201ENSMUST00000003857 Esm1Q9QYY7 184 aa13.03□□□□□ -0.32
Shkbp1-201ENSMUST00000003857 Usp9yF8VPU6 2556 aa13.03□□□□□ -0.32
Shkbp1-201ENSMUST00000003857 Odf3l2Q3TZ65 277 aa13.02□□□□□ -0.32
Shkbp1-201ENSMUST00000003857 Igkv4-53A0A0G2JFC6 119 aa13.02□□□□□ -0.33
Shkbp1-201ENSMUST00000003857 Gm9767G3X930 207 aa13.02□□□□□ -0.33
Shkbp1-201ENSMUST00000003857 Acyp1P56376 99 aa13.02□□□□□ -0.33
Shkbp1-201ENSMUST00000003857 Igkv1-35A0A0G2JDE5 120 aa13□□□□□ -0.33
Shkbp1-201ENSMUST00000003857 Defb29Q8BGW9 78 aa13□□□□□ -0.33
Shkbp1-201ENSMUST00000003857 NipblQ6KCD5 2798 aaKnown RBP13□□□□□ -0.33
Shkbp1-201ENSMUST00000003857 C2cd3Q52KB6 2323 aa12.99□□□□□ -0.33
Shkbp1-201ENSMUST00000003857 Gm16381A0A1Y7VKT9 73 aa12.99□□□□□ -0.33
Shkbp1-201ENSMUST00000003857 Gm10735Q3US96 136 aa12.99□□□□□ -0.33
Shkbp1-201ENSMUST00000003857 Sprr1bQ62267 153 aa12.99□□□□□ -0.33
Shkbp1-201ENSMUST00000003857 Epg5Q80TA9 2572 aa12.99□□□□□ -0.33
Shkbp1-201ENSMUST00000003857 Igkv1-99F6XWB2 120 aa12.99□□□□□ -0.33
Shkbp1-201ENSMUST00000003857 Bles03Q8VD62 251 aa12.99□□□□□ -0.33
Shkbp1-201ENSMUST00000003857 Akap13E9Q394 2776 aa12.98□□□□□ -0.33
Shkbp1-201ENSMUST00000003857 Igkv4-61A0A0G2JH00 117 aa12.98□□□□□ -0.33
Shkbp1-201ENSMUST00000003857 Xcl1P47993 114 aa12.98□□□□□ -0.33
Shkbp1-201ENSMUST00000003857 Mast4Q811L6 2618 aa12.98□□□□□ -0.33
Shkbp1-201ENSMUST00000003857 Tmem223Q9CQE2 199 aaKnown RBP12.98□□□□□ -0.33
Shkbp1-201ENSMUST00000003857 Igkv4-54A0A0G2JES9 117 aa12.97□□□□□ -0.33
Shkbp1-201ENSMUST00000003857 Gm28539A0A087WSL9 92 aa12.96□□□□□ -0.33
Shkbp1-201ENSMUST00000003857 Ighv1-56A0A0A6YXG2 117 aa12.96□□□□□ -0.33
Shkbp1-201ENSMUST00000003857 Krtap24-1G3X9A2 248 aa12.96□□□□□ -0.33
Shkbp1-201ENSMUST00000003857 Psors1c2Q80ZC9 134 aa12.96□□□□□ -0.33
Shkbp1-201ENSMUST00000003857 Zfp462B1AWL2 2495 aaKnown RBP12.96□□□□□ -0.34
Shkbp1-201ENSMUST00000003857 Igkv6-13A0A0G2JGY3 119 aa12.94□□□□□ -0.34
Shkbp1-201ENSMUST00000003857 Trav13-1A0A075B644 110 aa12.93□□□□□ -0.34
Shkbp1-201ENSMUST00000003857 Ighv1-59A0A0A6YXE0 117 aa12.92□□□□□ -0.34
Shkbp1-201ENSMUST00000003857 Smim26Q3V460 107 aa12.92□□□□□ -0.34
Shkbp1-201ENSMUST00000003857 BB014433Q8C5R5 389 aa12.92□□□□□ -0.34
Shkbp1-201ENSMUST00000003857 TrrapQ80YV3 2565 aaKnown RBP12.91□□□□□ -0.34
Shkbp1-201ENSMUST00000003857 Trav3-4A0A075B654 114 aa12.91□□□□□ -0.34
Shkbp1-201ENSMUST00000003857 PrcdQ00LT2 53 aa12.9□□□□□ -0.34
Shkbp1-201ENSMUST00000003857 Dnal4Q9DCM4 105 aa12.9□□□□□ -0.34
Shkbp1-201ENSMUST00000003857 Trav13n-2A0A0G2JF93 110 aa12.89□□□□□ -0.35
Shkbp1-201ENSMUST00000003857 1810062G17RikG3X8Y2 129 aa12.89□□□□□ -0.35
Shkbp1-201ENSMUST00000003857 Mzt1Q8BUR9 78 aa12.89□□□□□ -0.35
Shkbp1-201ENSMUST00000003857 Gm5142Q8C5X9 133 aa12.89□□□□□ -0.35
Shkbp1-201ENSMUST00000003857 Erdr1J3QMM0 206 aa12.88□□□□□ -0.35
Shkbp1-201ENSMUST00000003857 Prss58Q8BW11 241 aa12.88□□□□□ -0.35
Shkbp1-201ENSMUST00000003857 SmcpP15265 143 aa12.87□□□□□ -0.35
Shkbp1-201ENSMUST00000003857 Tcl1b3P56842 122 aa12.87□□□□□ -0.35
Shkbp1-201ENSMUST00000003857 Q8R092 253 aa12.87□□□□□ -0.35
Shkbp1-201ENSMUST00000003857 4930519P11RikQ9CUJ8 166 aa12.87□□□□□ -0.35
Shkbp1-201ENSMUST00000003857 Gm867A0A1W2P7T4 151 aa12.86□□□□□ -0.35
Shkbp1-201ENSMUST00000003857 Defa1P11477 93 aa12.86□□□□□ -0.35
Shkbp1-201ENSMUST00000003857 Trbv13-2A0A140T8N6 113 aa12.86□□□□□ -0.35
Shkbp1-201ENSMUST00000003857 C530025M09RikF6RGA8 229 aa12.86□□□□□ -0.35
Shkbp1-201ENSMUST00000003857 PkigO70139 76 aa12.86□□□□□ -0.35
Shkbp1-201ENSMUST00000003857 Apoc4Q61268 124 aa12.86□□□□□ -0.35
Shkbp1-201ENSMUST00000003857 Prh1P05142 261 aa12.85□□□□□ -0.35
Shkbp1-201ENSMUST00000003857 Igkv8-18A0A0B4J1J3 123 aa12.85□□□□□ -0.35
Shkbp1-201ENSMUST00000003857 Gm5153P01627 120 aa12.85□□□□□ -0.35
Shkbp1-201ENSMUST00000003857 Dand5Q76LW6 185 aa12.85□□□□□ -0.35
Shkbp1-201ENSMUST00000003857 Trav9n-4A0A075B631 113 aa12.84□□□□□ -0.35
Shkbp1-201ENSMUST00000003857 Ifitm6A0A1B0GS75 124 aa12.84□□□□□ -0.35
Shkbp1-201ENSMUST00000003857 Klk9Q32M27 251 aa12.84□□□□□ -0.35
Shkbp1-201ENSMUST00000003857 Leap2Q91V13 76 aa12.84□□□□□ -0.35
Shkbp1-201ENSMUST00000003857 Hspg2Q05793 3707 aaKnown RBP12.83□□□□□ -0.36
Shkbp1-201ENSMUST00000003857 Hbb-b2P02089 147 aa12.83□□□□□ -0.36
Shkbp1-201ENSMUST00000003857 Rpl39lQ9CQD0 51 aa12.83□□□□□ -0.36
Shkbp1-201ENSMUST00000003857 Smim20D3Z7Q2 69 aa12.81□□□□□ -0.36
Shkbp1-201ENSMUST00000003857 Igf1P05017 153 aa12.81□□□□□ -0.36
Shkbp1-201ENSMUST00000003857 Tmem86bQ497J1 226 aa12.81□□□□□ -0.36
Shkbp1-201ENSMUST00000003857 Igkv3-9A0A140T8P4 119 aa12.81□□□□□ -0.36
Shkbp1-201ENSMUST00000003857 Gm3250E9Q1M3 230 aa12.81□□□□□ -0.36
Shkbp1-201ENSMUST00000003857 Trav13-2A0A075B649 110 aa12.8□□□□□ -0.36
Shkbp1-201ENSMUST00000003857 D730001G18RikA0A087WQU7 115 aa12.8□□□□□ -0.36
Shkbp1-201ENSMUST00000003857 CrygfQ9CXV3 174 aa12.8□□□□□ -0.36
Shkbp1-201ENSMUST00000003857 Brwd1Q921C3 2304 aa12.8□□□□□ -0.36
Shkbp1-201ENSMUST00000003857 CrygdP04342 174 aa12.79□□□□□ -0.36
Shkbp1-201ENSMUST00000003857 CrygeQ03740 174 aa12.79□□□□□ -0.36
Shkbp1-201ENSMUST00000003857 Gm10845Q3UNY9 185 aa12.79□□□□□ -0.36
Shkbp1-201ENSMUST00000003857 Csdc2Q91YQ3 154 aa12.79□□□□□ -0.36
Shkbp1-201ENSMUST00000003857 Gm7102J3QQ10 178 aa12.79□□□□□ -0.36
Shkbp1-201ENSMUST00000003857 2010109I03RikQ9CQ11 111 aa12.79□□□□□ -0.36
Shkbp1-201ENSMUST00000003857 P01819 144 aa12.78□□□□□ -0.36
Shkbp1-201ENSMUST00000003857 Defa16P50714 93 aa12.78□□□□□ -0.36
Shkbp1-201ENSMUST00000003857 Hist1h4aP62806 103 aaKnown RBP12.78□□□□□ -0.36
Shkbp1-201ENSMUST00000003857 MifP34884 115 aaKnown RBP12.77□□□□□ -0.36
Shkbp1-201ENSMUST00000003857 Cmc4Q61908 68 aa12.77□□□□□ -0.36
Shkbp1-201ENSMUST00000003857 Ighv8-11A0A075B5X4 119 aa12.77□□□□□ -0.37
Retrieved 100 of 22,080 RNA–protein pairs in 47.3 ms