Protein–RNA interactions for Protein: A0A0G2JF93

Trav13n-2, T cell receptor alpha variable 13D-2 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav13n-2A0A0G2JF93 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Trav13n-2A0A0G2JF93 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
Trav13n-2A0A0G2JF93 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Trav13n-2A0A0G2JF93 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trav13n-2A0A0G2JF93 Psd-208ENSMUST00000224556 2034 ntBASIC21.15■□□□□ 0.98
Trav13n-2A0A0G2JF93 Gm25239-201ENSMUST00000174915 86 ntBASIC21.13■□□□□ 0.97
Trav13n-2A0A0G2JF93 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trav13n-2A0A0G2JF93 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trav13n-2A0A0G2JF93 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trav13n-2A0A0G2JF93 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trav13n-2A0A0G2JF93 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trav13n-2A0A0G2JF93 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trav13n-2A0A0G2JF93 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trav13n-2A0A0G2JF93 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trav13n-2A0A0G2JF93 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trav13n-2A0A0G2JF93 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Trav13n-2A0A0G2JF93 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
Trav13n-2A0A0G2JF93 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
Trav13n-2A0A0G2JF93 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC19.61■□□□□ 0.73
Trav13n-2A0A0G2JF93 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trav13n-2A0A0G2JF93 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trav13n-2A0A0G2JF93 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trav13n-2A0A0G2JF93 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Trav13n-2A0A0G2JF93 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
Trav13n-2A0A0G2JF93 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trav13n-2A0A0G2JF93 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trav13n-2A0A0G2JF93 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trav13n-2A0A0G2JF93 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Trav13n-2A0A0G2JF93 Gm15042-201ENSMUST00000120212 883 ntBASIC19.24■□□□□ 0.67
Trav13n-2A0A0G2JF93 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trav13n-2A0A0G2JF93 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC19.21■□□□□ 0.67
Trav13n-2A0A0G2JF93 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC19.19■□□□□ 0.66
Trav13n-2A0A0G2JF93 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trav13n-2A0A0G2JF93 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trav13n-2A0A0G2JF93 Gm42596-201ENSMUST00000196305 1958 ntBASIC19.07■□□□□ 0.64
Trav13n-2A0A0G2JF93 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trav13n-2A0A0G2JF93 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trav13n-2A0A0G2JF93 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trav13n-2A0A0G2JF93 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trav13n-2A0A0G2JF93 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Trav13n-2A0A0G2JF93 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trav13n-2A0A0G2JF93 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trav13n-2A0A0G2JF93 Gm10524-201ENSMUST00000181931 1893 ntBASIC18.92■□□□□ 0.62
Trav13n-2A0A0G2JF93 Gm15045-201ENSMUST00000117359 883 ntBASIC18.92■□□□□ 0.62
Trav13n-2A0A0G2JF93 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC18.92■□□□□ 0.62
Trav13n-2A0A0G2JF93 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trav13n-2A0A0G2JF93 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC18.88■□□□□ 0.61
Trav13n-2A0A0G2JF93 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trav13n-2A0A0G2JF93 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trav13n-2A0A0G2JF93 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav13n-2A0A0G2JF93 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Trav13n-2A0A0G2JF93 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Trav13n-2A0A0G2JF93 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav13n-2A0A0G2JF93 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trav13n-2A0A0G2JF93 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trav13n-2A0A0G2JF93 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC18.58■□□□□ 0.56
Trav13n-2A0A0G2JF93 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Trav13n-2A0A0G2JF93 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav13n-2A0A0G2JF93 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav13n-2A0A0G2JF93 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav13n-2A0A0G2JF93 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav13n-2A0A0G2JF93 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Trav13n-2A0A0G2JF93 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trav13n-2A0A0G2JF93 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trav13n-2A0A0G2JF93 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav13n-2A0A0G2JF93 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav13n-2A0A0G2JF93 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trav13n-2A0A0G2JF93 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Trav13n-2A0A0G2JF93 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trav13n-2A0A0G2JF93 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trav13n-2A0A0G2JF93 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Trav13n-2A0A0G2JF93 CT025624.2-201ENSMUST00000223609 1909 ntBASIC18.28■□□□□ 0.52
Trav13n-2A0A0G2JF93 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav13n-2A0A0G2JF93 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trav13n-2A0A0G2JF93 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav13n-2A0A0G2JF93 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Trav13n-2A0A0G2JF93 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trav13n-2A0A0G2JF93 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trav13n-2A0A0G2JF93 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Trav13n-2A0A0G2JF93 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trav13n-2A0A0G2JF93 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trav13n-2A0A0G2JF93 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trav13n-2A0A0G2JF93 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC18.06■□□□□ 0.48
Trav13n-2A0A0G2JF93 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trav13n-2A0A0G2JF93 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Trav13n-2A0A0G2JF93 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC18.03■□□□□ 0.48
Trav13n-2A0A0G2JF93 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trav13n-2A0A0G2JF93 Gm24109-201ENSMUST00000175489 103 ntBASIC18.01■□□□□ 0.47
Trav13n-2A0A0G2JF93 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC18■□□□□ 0.47
Trav13n-2A0A0G2JF93 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trav13n-2A0A0G2JF93 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC17.94■□□□□ 0.46
Trav13n-2A0A0G2JF93 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trav13n-2A0A0G2JF93 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trav13n-2A0A0G2JF93 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trav13n-2A0A0G2JF93 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Trav13n-2A0A0G2JF93 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trav13n-2A0A0G2JF93 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trav13n-2A0A0G2JF93 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Trav13n-2A0A0G2JF93 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trav13n-2A0A0G2JF93 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 13.6 ms