Protein–RNA interactions for Protein: A0A075B631

Trav9n-4, T cell receptor alpha variable 9N-4 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav9n-4A0A075B631 Gm25239-201ENSMUST00000174915 86 ntBASIC23,99■■□□□ 1,43
Trav9n-4A0A075B631 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC23,22■■□□□ 1,31
Trav9n-4A0A075B631 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC22,5■■□□□ 1,19
Trav9n-4A0A075B631 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC22,41■■□□□ 1,18
Trav9n-4A0A075B631 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC21,96■■□□□ 1,11
Trav9n-4A0A075B631 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC21,74■■□□□ 1,07
Trav9n-4A0A075B631 Psd-208ENSMUST00000224556 2034 ntBASIC21,62■■□□□ 1,05
Trav9n-4A0A075B631 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC21,5■■□□□ 1,03
Trav9n-4A0A075B631 Gm15042-201ENSMUST00000120212 883 ntBASIC21,47■■□□□ 1,03
Trav9n-4A0A075B631 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC21,17■□□□□ 0,98
Trav9n-4A0A075B631 Gm15045-201ENSMUST00000117359 883 ntBASIC21,04■□□□□ 0,96
Trav9n-4A0A075B631 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC21,01■□□□□ 0,95
Trav9n-4A0A075B631 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC20,97■□□□□ 0,95
Trav9n-4A0A075B631 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC20,93■□□□□ 0,94
Trav9n-4A0A075B631 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC20,83■□□□□ 0,92
Trav9n-4A0A075B631 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC20,76■□□□□ 0,91
Trav9n-4A0A075B631 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC20,73■□□□□ 0,91
Trav9n-4A0A075B631 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC20,66■□□□□ 0,9
Trav9n-4A0A075B631 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC20,66■□□□□ 0,9
Trav9n-4A0A075B631 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC20,6■□□□□ 0,89
Trav9n-4A0A075B631 Gm24109-201ENSMUST00000175489 103 ntBASIC20,53■□□□□ 0,88
Trav9n-4A0A075B631 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC20,43■□□□□ 0,86
Trav9n-4A0A075B631 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC20,42■□□□□ 0,86
Trav9n-4A0A075B631 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20,41■□□□□ 0,86
Trav9n-4A0A075B631 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC20,4■□□□□ 0,86
Trav9n-4A0A075B631 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC20,35■□□□□ 0,85
Trav9n-4A0A075B631 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC20,31■□□□□ 0,84
Trav9n-4A0A075B631 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC20,31■□□□□ 0,84
Trav9n-4A0A075B631 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC20,19■□□□□ 0,82
Trav9n-4A0A075B631 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC20,18■□□□□ 0,82
Trav9n-4A0A075B631 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC20,18■□□□□ 0,82
Trav9n-4A0A075B631 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC20,18■□□□□ 0,82
Trav9n-4A0A075B631 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC20,16■□□□□ 0,82
Trav9n-4A0A075B631 Gm23366-201ENSMUST00000175022 89 ntBASIC20,13■□□□□ 0,81
Trav9n-4A0A075B631 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC20,05■□□□□ 0,8
Trav9n-4A0A075B631 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC20,02■□□□□ 0,8
Trav9n-4A0A075B631 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC20,01■□□□□ 0,79
Trav9n-4A0A075B631 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC19,98■□□□□ 0,79
Trav9n-4A0A075B631 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC19,96■□□□□ 0,79
Trav9n-4A0A075B631 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC19,94■□□□□ 0,78
Trav9n-4A0A075B631 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC19,84■□□□□ 0,77
Trav9n-4A0A075B631 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC19,83■□□□□ 0,77
Trav9n-4A0A075B631 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC19,83■□□□□ 0,77
Trav9n-4A0A075B631 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC19,81■□□□□ 0,76
Trav9n-4A0A075B631 Gm10524-201ENSMUST00000181931 1893 ntBASIC19,79■□□□□ 0,76
Trav9n-4A0A075B631 AC153911.1-202ENSMUST00000218534 1034 ntBASIC19,74■□□□□ 0,75
Trav9n-4A0A075B631 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC19,73■□□□□ 0,75
Trav9n-4A0A075B631 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC19,72■□□□□ 0,75
Trav9n-4A0A075B631 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC19,7■□□□□ 0,74
Trav9n-4A0A075B631 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC19,67■□□□□ 0,74
Trav9n-4A0A075B631 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC19,58■□□□□ 0,73
Trav9n-4A0A075B631 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC19,5■□□□□ 0,71
Trav9n-4A0A075B631 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC19,39■□□□□ 0,69
Trav9n-4A0A075B631 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC19,37■□□□□ 0,69
Trav9n-4A0A075B631 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC19,37■□□□□ 0,69
Trav9n-4A0A075B631 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC19,36■□□□□ 0,69
Trav9n-4A0A075B631 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC19,35■□□□□ 0,69
Trav9n-4A0A075B631 CT025624.2-201ENSMUST00000223609 1909 ntBASIC19,3■□□□□ 0,68
Trav9n-4A0A075B631 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC19,24■□□□□ 0,67
Trav9n-4A0A075B631 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC19,24■□□□□ 0,67
Trav9n-4A0A075B631 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC19,22■□□□□ 0,67
Trav9n-4A0A075B631 Gm42596-201ENSMUST00000196305 1958 ntBASIC19,16■□□□□ 0,66
Trav9n-4A0A075B631 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC19,15■□□□□ 0,66
Trav9n-4A0A075B631 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC19,13■□□□□ 0,65
Trav9n-4A0A075B631 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC19,12■□□□□ 0,65
Trav9n-4A0A075B631 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC19,12■□□□□ 0,65
Trav9n-4A0A075B631 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC19,09■□□□□ 0,65
Trav9n-4A0A075B631 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC19,08■□□□□ 0,65
Trav9n-4A0A075B631 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC19,07■□□□□ 0,64
Trav9n-4A0A075B631 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC19,03■□□□□ 0,64
Trav9n-4A0A075B631 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC19,02■□□□□ 0,64
Trav9n-4A0A075B631 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0,63
Trav9n-4A0A075B631 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0,63
Trav9n-4A0A075B631 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC18,98■□□□□ 0,63
Trav9n-4A0A075B631 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC18,97■□□□□ 0,63
Trav9n-4A0A075B631 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC18,97■□□□□ 0,63
Trav9n-4A0A075B631 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC18,97■□□□□ 0,63
Trav9n-4A0A075B631 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC18,95■□□□□ 0,62
Trav9n-4A0A075B631 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC18,93■□□□□ 0,62
Trav9n-4A0A075B631 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC18,93■□□□□ 0,62
Trav9n-4A0A075B631 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC18,92■□□□□ 0,62
Trav9n-4A0A075B631 Gm27325-201ENSMUST00000175467 74 ntBASIC18,87■□□□□ 0,61
Trav9n-4A0A075B631 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC18,83■□□□□ 0,6
Trav9n-4A0A075B631 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC18,82■□□□□ 0,6
Trav9n-4A0A075B631 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC18,82■□□□□ 0,6
Trav9n-4A0A075B631 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC18,79■□□□□ 0,6
Trav9n-4A0A075B631 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC18,76■□□□□ 0,59
Trav9n-4A0A075B631 Gm25238-201ENSMUST00000174914 89 ntBASIC18,75■□□□□ 0,59
Trav9n-4A0A075B631 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC18,74■□□□□ 0,59
Trav9n-4A0A075B631 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC18,74■□□□□ 0,59
Trav9n-4A0A075B631 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC18,74■□□□□ 0,59
Trav9n-4A0A075B631 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC18,73■□□□□ 0,59
Trav9n-4A0A075B631 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC18,72■□□□□ 0,59
Trav9n-4A0A075B631 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC18,7■□□□□ 0,58
Trav9n-4A0A075B631 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC18,7■□□□□ 0,58
Trav9n-4A0A075B631 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC18,67■□□□□ 0,58
Trav9n-4A0A075B631 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC18,67■□□□□ 0,58
Trav9n-4A0A075B631 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC18,66■□□□□ 0,58
Trav9n-4A0A075B631 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC18,66■□□□□ 0,58
Trav9n-4A0A075B631 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC18,65■□□□□ 0,58
Retrieved 100 of 76,532 protein–RNA pairs in 40,5 ms