RNA–Protein interactions for RNA: ENSMUST00000003857.6

Shkbp1-201, Transcript of SH3KBP1-binding protein 1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shkbp1, Length 2,358 nt, Biotype protein coding, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1-201ENSMUST00000003857 NischQ80TM9 1593 aa35.97■■■■□ 3.35
Shkbp1-201ENSMUST00000003857 Gm35339A0A140LHH9 1649 aa35.4■■■■□ 3.26
Shkbp1-201ENSMUST00000003857 Abcc9P70170 1546 aa35.01■■■■□ 3.2
Shkbp1-201ENSMUST00000003857 Abcc8B2RUS7 1588 aa34.12■■■■□ 3.05
Shkbp1-201ENSMUST00000003857 Rtl1Q7M732 1744 aa33.46■■■□□ 2.95
Shkbp1-201ENSMUST00000003857 Rhox8Q6VSS7 320 aa33.34■■■□□ 2.93
Shkbp1-201ENSMUST00000003857 Ccdc180J3QNE4 1664 aa32.82■■■□□ 2.84
Shkbp1-201ENSMUST00000003857 Zcchc6Q5BLK4 1491 aaKnown RBP32.14■■■□□ 2.74
Shkbp1-201ENSMUST00000003857 Dcaf1Q80TR8 1506 aa31.93■■■□□ 2.7
Shkbp1-201ENSMUST00000003857 ScribQ80U72 1612 aa31.73■■■□□ 2.67
Shkbp1-201ENSMUST00000003857 Rb1cc1Q9ESK9 1588 aa31.56■■■□□ 2.64
Shkbp1-201ENSMUST00000003857 Rpgrip1Q9EPQ2 1331 aa31.3■■■□□ 2.6
Shkbp1-201ENSMUST00000003857 Baz1aO88379 1555 aa31.22■■■□□ 2.59
Shkbp1-201ENSMUST00000003857 Kdm5dQ62240 1548 aa31.15■■■□□ 2.58
Shkbp1-201ENSMUST00000003857 HrcG5E8J6 738 aa31.1■■■□□ 2.57
Shkbp1-201ENSMUST00000003857 Ccdc136Q3TVA9 1136 aa30.88■■■□□ 2.53
Shkbp1-201ENSMUST00000003857 NacadQ5SWP3 1504 aa30.84■■■□□ 2.53
Shkbp1-201ENSMUST00000003857 Acin1Q9JIX8 1338 aaKnown RBP30.76■■■□□ 2.51
Shkbp1-201ENSMUST00000003857 Crybg2B7ZCC2 1516 aa30.59■■■□□ 2.49
Shkbp1-201ENSMUST00000003857 Smarca2Q6DIC0 1577 aa30.56■■■□□ 2.48
Shkbp1-201ENSMUST00000003857 Ehmt2Q9Z148 1263 aaKnown RBP30.36■■■□□ 2.45
Shkbp1-201ENSMUST00000003857 Trim41Q5NCC3 630 aa30.36■■■□□ 2.45
Shkbp1-201ENSMUST00000003857 Cep164Q5DU05 1446 aa30.19■■■□□ 2.42
Shkbp1-201ENSMUST00000003857 Sycp2Q9CUU3 1500 aa30.18■■■□□ 2.42
Shkbp1-201ENSMUST00000003857 Brd4Q9ESU6 1400 aaKnown RBP29.74■■■□□ 2.35
Shkbp1-201ENSMUST00000003857 Rsf1E9PWW9 1441 aaKnown RBP29.69■■■□□ 2.34
Shkbp1-201ENSMUST00000003857 Cecr2E9Q2Z1 1453 aa29.65■■■□□ 2.34
Shkbp1-201ENSMUST00000003857 Chic1Q8CBW7 227 aa29.55■■■□□ 2.32
Shkbp1-201ENSMUST00000003857 Golga3P55937 1487 aa29.54■■■□□ 2.32
Shkbp1-201ENSMUST00000003857 Cngb1E1AZ71 1325 aa29.53■■■□□ 2.32
Shkbp1-201ENSMUST00000003857 Pcgf6Q99NA9 353 aa29.53■■■□□ 2.32
Shkbp1-201ENSMUST00000003857 Synj1Q8CHC4 1574 aa29.53■■■□□ 2.32
Shkbp1-201ENSMUST00000003857 BicraF8VPZ9 1578 aa29.5■■■□□ 2.31
Shkbp1-201ENSMUST00000003857 Ccdc88bQ4QRL3 1481 aa29.46■■■□□ 2.31
Shkbp1-201ENSMUST00000003857 CftrP26361 1476 aa29.28■■■□□ 2.28
Shkbp1-201ENSMUST00000003857 Gab3Q8BSM5 595 aa29.28■■■□□ 2.28
Shkbp1-201ENSMUST00000003857 Top2bQ64511 1612 aa29.27■■■□□ 2.28
Shkbp1-201ENSMUST00000003857 Cttnbp2B9EJA2 1648 aa29.18■■■□□ 2.26
Shkbp1-201ENSMUST00000003857 Supt5hO55201 1082 aaKnown RBP29.02■■■□□ 2.24
Shkbp1-201ENSMUST00000003857 Esf1Q3V1V3 845 aaKnown RBP28.96■■■□□ 2.23
Shkbp1-201ENSMUST00000003857 Cc2d2aQ8CFW7 1633 aa28.95■■■□□ 2.23
Shkbp1-201ENSMUST00000003857 Smarca4Q3TKT4 1613 aaKnown RBP28.95■■■□□ 2.22
Shkbp1-201ENSMUST00000003857 NefmP08553 848 aa28.84■■■□□ 2.21
Shkbp1-201ENSMUST00000003857 Mier1Q5UAK0 511 aa28.82■■■□□ 2.2
Shkbp1-201ENSMUST00000003857 Rapgef2Q8CHG7 1496 aa28.75■■■□□ 2.19
Shkbp1-201ENSMUST00000003857 Fmn1Q05860 1466 aa28.73■■■□□ 2.19
Shkbp1-201ENSMUST00000003857 Top2aQ01320 1528 aaKnown RBP28.69■■■□□ 2.18
Shkbp1-201ENSMUST00000003857 Zeb1Q64318 1117 aa28.59■■■□□ 2.17
Shkbp1-201ENSMUST00000003857 Iqgap2Q3UQ44 1575 aa28.52■■■□□ 2.16
Shkbp1-201ENSMUST00000003857 Cep162Q6ZQ06 1403 aa28.46■■■□□ 2.15
Shkbp1-201ENSMUST00000003857 Eif4g1Q6NZJ6 1600 aaKnown RBP28.34■■■□□ 2.13
Shkbp1-201ENSMUST00000003857 Neurod1Q60867 357 aa28.3■■■□□ 2.12
Shkbp1-201ENSMUST00000003857 UbtfP25976 765 aaKnown RBP28.3■■■□□ 2.12
Shkbp1-201ENSMUST00000003857 Sall2Q9QX96 1004 aa28.3■■■□□ 2.12
Shkbp1-201ENSMUST00000003857 Atad2bE9Q166 1460 aaKnown RBP28.26■■■□□ 2.11
Shkbp1-201ENSMUST00000003857 TnnQ80Z71 1560 aa28.25■■■□□ 2.11
Shkbp1-201ENSMUST00000003857 Myt1lP97500 1187 aa28.15■■■□□ 2.1
Shkbp1-201ENSMUST00000003857 Npm2Q80W85 207 aa28.07■■■□□ 2.08
Shkbp1-201ENSMUST00000003857 Pds5bQ4VA53 1446 aaKnown RBP28.04■■■□□ 2.08
Shkbp1-201ENSMUST00000003857 Clip1Q922J3 1391 aa28.02■■■□□ 2.08
Shkbp1-201ENSMUST00000003857 Las1lA2BE28 776 aaKnown RBP28.01■■■□□ 2.07
Shkbp1-201ENSMUST00000003857 Arhgap35Q91YM2 1499 aa27.94■■■□□ 2.06
Shkbp1-201ENSMUST00000003857 Ncapd3Q6ZQK0 1506 aa27.92■■■□□ 2.06
Shkbp1-201ENSMUST00000003857 Aebp2Q9Z248 504 aaKnown RBP27.92■■■□□ 2.06
Shkbp1-201ENSMUST00000003857 Wdr62Q3U3T8 1523 aa27.9■■■□□ 2.06
Shkbp1-201ENSMUST00000003857 NrkQ9R0G8 1455 aa27.9■■■□□ 2.06
Shkbp1-201ENSMUST00000003857 Lamc3Q9R0B6 1581 aa27.9■■■□□ 2.06
Shkbp1-201ENSMUST00000003857 Frmpd1A2AKB4 1549 aa27.9■■■□□ 2.06
Shkbp1-201ENSMUST00000003857 PtprkP35822 1457 aa27.85■■■□□ 2.05
Shkbp1-201ENSMUST00000003857 Plekhg3Q4VAC9 1341 aa27.84■■■□□ 2.05
Shkbp1-201ENSMUST00000003857 Wdr66E9Q743 1299 aa27.84■■■□□ 2.05
Shkbp1-201ENSMUST00000003857 ClspnQ80YR7 1315 aa27.82■■■□□ 2.04
Shkbp1-201ENSMUST00000003857 Arap1Q4LDD4 1452 aa27.76■■■□□ 2.04
Shkbp1-201ENSMUST00000003857 TonslQ6NZL6 1363 aa27.76■■■□□ 2.03
Shkbp1-201ENSMUST00000003857 Anks4bQ8K3X6 423 aa27.73■■■□□ 2.03
Shkbp1-201ENSMUST00000003857 Unc13aQ4KUS2 1712 aa27.73■■■□□ 2.03
Shkbp1-201ENSMUST00000003857 Eea1Q8BL66 1411 aa27.72■■■□□ 2.03
Shkbp1-201ENSMUST00000003857 Shroom4Q1W617 1475 aa27.72■■■□□ 2.03
Shkbp1-201ENSMUST00000003857 Camsap1A2AHC3 1581 aa27.7■■■□□ 2.02
Shkbp1-201ENSMUST00000003857 Map3k1P53349 1493 aa27.7■■■□□ 2.02
Shkbp1-201ENSMUST00000003857 Arhgef5E9Q7D5 1581 aa27.69■■■□□ 2.02
Shkbp1-201ENSMUST00000003857 Ccdc18Q640L5 1455 aa27.64■■■□□ 2.02
Shkbp1-201ENSMUST00000003857 Kif15Q6P9L6 1387 aa27.62■■■□□ 2.01
Shkbp1-201ENSMUST00000003857 Kdm5bQ80Y84 1544 aa27.6■■■□□ 2.01
Shkbp1-201ENSMUST00000003857 Ercc6F8VPZ5 1481 aa27.56■■■□□ 2
Shkbp1-201ENSMUST00000003857 Setd5Q5XJV7 1441 aa27.55■■■□□ 2
Shkbp1-201ENSMUST00000003857 Tiam1Q60610 1591 aa27.53■■■□□ 2
Shkbp1-201ENSMUST00000003857 Erich3F6QRE9 1637 aa27.53■■■□□ 2
Shkbp1-201ENSMUST00000003857 Cdk11bP24788 784 aaKnown RBP27.51■■□□□ 1.99
Shkbp1-201ENSMUST00000003857 Nop58Q6DFW4 536 aaKnown RBP27.51■■□□□ 1.99
Shkbp1-201ENSMUST00000003857 Grin2bQ01097 1482 aa27.5■■□□□ 1.99
Shkbp1-201ENSMUST00000003857 Il27Q8K3I6 234 aa27.49■■□□□ 1.99
Shkbp1-201ENSMUST00000003857 TchhA0A0B4J1F9 1599 aa27.47■■□□□ 1.99
Shkbp1-201ENSMUST00000003857 Mroh2bQ7M6Y6 1581 aa27.47■■□□□ 1.99
Shkbp1-201ENSMUST00000003857 Ankrd26Q811D2 1581 aa27.43■■□□□ 1.98
Shkbp1-201ENSMUST00000003857 Ppargc1bQ8VHJ7 1014 aa27.42■■□□□ 1.98
Shkbp1-201ENSMUST00000003857 Ap3b1Q9Z1T1 1105 aa27.4■■□□□ 1.98
Shkbp1-201ENSMUST00000003857 AqrQ8CFQ3 1481 aaKnown RBP27.39■■□□□ 1.97
Shkbp1-201ENSMUST00000003857 Naip1Q9QWK5 1403 aa27.35■■□□□ 1.97
Shkbp1-201ENSMUST00000003857 Baz1bQ9Z277 1479 aa27.33■■□□□ 1.97
Retrieved 100 of 22,080 RNA–protein pairs in 16.2 ms