Protein–RNA interactions for Protein: A0A075B649

Trav13-2, T cell receptor alpha variable 13-2 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav13-2A0A075B649 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Trav13-2A0A075B649 Gm25239-201ENSMUST00000174915 86 ntBASIC22.63■■□□□ 1.21
Trav13-2A0A075B649 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Trav13-2A0A075B649 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
Trav13-2A0A075B649 Psd-208ENSMUST00000224556 2034 ntBASIC21.27■■□□□ 1
Trav13-2A0A075B649 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trav13-2A0A075B649 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trav13-2A0A075B649 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trav13-2A0A075B649 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trav13-2A0A075B649 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Trav13-2A0A075B649 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trav13-2A0A075B649 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trav13-2A0A075B649 Gm15042-201ENSMUST00000120212 883 ntBASIC20.36■□□□□ 0.85
Trav13-2A0A075B649 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trav13-2A0A075B649 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trav13-2A0A075B649 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trav13-2A0A075B649 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC20.22■□□□□ 0.83
Trav13-2A0A075B649 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trav13-2A0A075B649 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trav13-2A0A075B649 Gm15045-201ENSMUST00000117359 883 ntBASIC19.98■□□□□ 0.79
Trav13-2A0A075B649 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trav13-2A0A075B649 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trav13-2A0A075B649 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trav13-2A0A075B649 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Trav13-2A0A075B649 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trav13-2A0A075B649 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trav13-2A0A075B649 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trav13-2A0A075B649 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trav13-2A0A075B649 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Trav13-2A0A075B649 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Trav13-2A0A075B649 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trav13-2A0A075B649 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trav13-2A0A075B649 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trav13-2A0A075B649 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC19.54■□□□□ 0.72
Trav13-2A0A075B649 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC19.49■□□□□ 0.71
Trav13-2A0A075B649 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trav13-2A0A075B649 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC19.43■□□□□ 0.7
Trav13-2A0A075B649 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trav13-2A0A075B649 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trav13-2A0A075B649 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trav13-2A0A075B649 Gm24109-201ENSMUST00000175489 103 ntBASIC19.31■□□□□ 0.68
Trav13-2A0A075B649 Gm10524-201ENSMUST00000181931 1893 ntBASIC19.26■□□□□ 0.67
Trav13-2A0A075B649 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trav13-2A0A075B649 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC19.23■□□□□ 0.67
Trav13-2A0A075B649 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trav13-2A0A075B649 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
Trav13-2A0A075B649 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC19.13■□□□□ 0.65
Trav13-2A0A075B649 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trav13-2A0A075B649 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Trav13-2A0A075B649 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trav13-2A0A075B649 Gm23366-201ENSMUST00000175022 89 ntBASIC18.99■□□□□ 0.63
Trav13-2A0A075B649 Gm42596-201ENSMUST00000196305 1958 ntBASIC18.95■□□□□ 0.62
Trav13-2A0A075B649 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trav13-2A0A075B649 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trav13-2A0A075B649 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trav13-2A0A075B649 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav13-2A0A075B649 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trav13-2A0A075B649 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trav13-2A0A075B649 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trav13-2A0A075B649 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Trav13-2A0A075B649 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Trav13-2A0A075B649 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav13-2A0A075B649 AC153911.1-202ENSMUST00000218534 1034 ntBASIC18.77■□□□□ 0.6
Trav13-2A0A075B649 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav13-2A0A075B649 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav13-2A0A075B649 CT025624.2-201ENSMUST00000223609 1909 ntBASIC18.73■□□□□ 0.59
Trav13-2A0A075B649 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav13-2A0A075B649 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Trav13-2A0A075B649 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Trav13-2A0A075B649 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Trav13-2A0A075B649 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trav13-2A0A075B649 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav13-2A0A075B649 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav13-2A0A075B649 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trav13-2A0A075B649 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav13-2A0A075B649 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav13-2A0A075B649 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav13-2A0A075B649 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav13-2A0A075B649 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.55
Trav13-2A0A075B649 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav13-2A0A075B649 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav13-2A0A075B649 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Trav13-2A0A075B649 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trav13-2A0A075B649 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trav13-2A0A075B649 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trav13-2A0A075B649 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
Trav13-2A0A075B649 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Trav13-2A0A075B649 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trav13-2A0A075B649 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Trav13-2A0A075B649 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trav13-2A0A075B649 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trav13-2A0A075B649 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trav13-2A0A075B649 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trav13-2A0A075B649 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trav13-2A0A075B649 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trav13-2A0A075B649 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC18.14■□□□□ 0.49
Trav13-2A0A075B649 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Trav13-2A0A075B649 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Trav13-2A0A075B649 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trav13-2A0A075B649 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 8.6 ms