Protein–RNA interactions for Protein: A0A0G2JFX3

Trav13d-4, T cell receptor alpha variable 13D-4 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav13d-4A0A0G2JFX3 Gm25239-201ENSMUST00000174915 86 ntBASIC23.68■■□□□ 1.38
Trav13d-4A0A0G2JFX3 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Trav13d-4A0A0G2JFX3 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Trav13d-4A0A0G2JFX3 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
Trav13d-4A0A0G2JFX3 Psd-208ENSMUST00000224556 2034 ntBASIC21.85■■□□□ 1.09
Trav13d-4A0A0G2JFX3 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Trav13d-4A0A0G2JFX3 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trav13d-4A0A0G2JFX3 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Trav13d-4A0A0G2JFX3 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Trav13d-4A0A0G2JFX3 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Trav13d-4A0A0G2JFX3 Gm15042-201ENSMUST00000120212 883 ntBASIC21.24■□□□□ 0.99
Trav13d-4A0A0G2JFX3 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trav13d-4A0A0G2JFX3 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trav13d-4A0A0G2JFX3 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trav13d-4A0A0G2JFX3 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC20.93■□□□□ 0.94
Trav13d-4A0A0G2JFX3 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trav13d-4A0A0G2JFX3 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trav13d-4A0A0G2JFX3 Gm15045-201ENSMUST00000117359 883 ntBASIC20.84■□□□□ 0.93
Trav13d-4A0A0G2JFX3 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
Trav13d-4A0A0G2JFX3 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trav13d-4A0A0G2JFX3 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trav13d-4A0A0G2JFX3 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trav13d-4A0A0G2JFX3 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trav13d-4A0A0G2JFX3 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trav13d-4A0A0G2JFX3 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trav13d-4A0A0G2JFX3 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trav13d-4A0A0G2JFX3 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trav13d-4A0A0G2JFX3 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trav13d-4A0A0G2JFX3 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trav13d-4A0A0G2JFX3 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC20.26■□□□□ 0.83
Trav13d-4A0A0G2JFX3 Gm24109-201ENSMUST00000175489 103 ntBASIC20.24■□□□□ 0.83
Trav13d-4A0A0G2JFX3 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trav13d-4A0A0G2JFX3 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC20.17■□□□□ 0.82
Trav13d-4A0A0G2JFX3 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Trav13d-4A0A0G2JFX3 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Trav13d-4A0A0G2JFX3 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trav13d-4A0A0G2JFX3 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trav13d-4A0A0G2JFX3 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC20■□□□□ 0.79
Trav13d-4A0A0G2JFX3 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trav13d-4A0A0G2JFX3 Gm10524-201ENSMUST00000181931 1893 ntBASIC19.87■□□□□ 0.77
Trav13d-4A0A0G2JFX3 Gm23366-201ENSMUST00000175022 89 ntBASIC19.85■□□□□ 0.77
Trav13d-4A0A0G2JFX3 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trav13d-4A0A0G2JFX3 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trav13d-4A0A0G2JFX3 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC19.8■□□□□ 0.76
Trav13d-4A0A0G2JFX3 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trav13d-4A0A0G2JFX3 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trav13d-4A0A0G2JFX3 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Trav13d-4A0A0G2JFX3 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trav13d-4A0A0G2JFX3 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Trav13d-4A0A0G2JFX3 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Trav13d-4A0A0G2JFX3 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC19.69■□□□□ 0.74
Trav13d-4A0A0G2JFX3 AC153911.1-202ENSMUST00000218534 1034 ntBASIC19.57■□□□□ 0.72
Trav13d-4A0A0G2JFX3 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trav13d-4A0A0G2JFX3 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trav13d-4A0A0G2JFX3 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Trav13d-4A0A0G2JFX3 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trav13d-4A0A0G2JFX3 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trav13d-4A0A0G2JFX3 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trav13d-4A0A0G2JFX3 Gm42596-201ENSMUST00000196305 1958 ntBASIC19.4■□□□□ 0.7
Trav13d-4A0A0G2JFX3 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trav13d-4A0A0G2JFX3 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trav13d-4A0A0G2JFX3 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trav13d-4A0A0G2JFX3 CT025624.2-201ENSMUST00000223609 1909 ntBASIC19.35■□□□□ 0.69
Trav13d-4A0A0G2JFX3 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trav13d-4A0A0G2JFX3 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Trav13d-4A0A0G2JFX3 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trav13d-4A0A0G2JFX3 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trav13d-4A0A0G2JFX3 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
Trav13d-4A0A0G2JFX3 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trav13d-4A0A0G2JFX3 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Trav13d-4A0A0G2JFX3 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trav13d-4A0A0G2JFX3 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trav13d-4A0A0G2JFX3 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav13d-4A0A0G2JFX3 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
Trav13d-4A0A0G2JFX3 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trav13d-4A0A0G2JFX3 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Trav13d-4A0A0G2JFX3 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trav13d-4A0A0G2JFX3 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC19.03■□□□□ 0.64
Trav13d-4A0A0G2JFX3 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trav13d-4A0A0G2JFX3 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trav13d-4A0A0G2JFX3 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trav13d-4A0A0G2JFX3 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trav13d-4A0A0G2JFX3 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trav13d-4A0A0G2JFX3 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC18.86■□□□□ 0.61
Trav13d-4A0A0G2JFX3 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Trav13d-4A0A0G2JFX3 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trav13d-4A0A0G2JFX3 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trav13d-4A0A0G2JFX3 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
Trav13d-4A0A0G2JFX3 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav13d-4A0A0G2JFX3 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trav13d-4A0A0G2JFX3 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trav13d-4A0A0G2JFX3 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav13d-4A0A0G2JFX3 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav13d-4A0A0G2JFX3 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Trav13d-4A0A0G2JFX3 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Trav13d-4A0A0G2JFX3 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC18.71■□□□□ 0.59
Trav13d-4A0A0G2JFX3 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav13d-4A0A0G2JFX3 Gm27325-201ENSMUST00000175467 74 ntBASIC18.7■□□□□ 0.58
Trav13d-4A0A0G2JFX3 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav13d-4A0A0G2JFX3 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 13.4 ms