Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC44.18■■■■■ 4.66
USP42Q9H9J4 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC43.86■■■■■ 4.61
USP42Q9H9J4 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC43.24■■■■■ 4.51
USP42Q9H9J4 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC43.1■■■■■ 4.49
USP42Q9H9J4 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC42.7■■■■■ 4.43
USP42Q9H9J4 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC42.41■■■■■ 4.38
USP42Q9H9J4 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC42.18■■■■■ 4.34
USP42Q9H9J4 AL356512.1-201ENST00000607453 1739 ntBASIC42.05■■■■■ 4.32
USP42Q9H9J4 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC41.96■■■■■ 4.31
USP42Q9H9J4 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC41.79■■■■■ 4.28
USP42Q9H9J4 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC41.67■■■■■ 4.26
USP42Q9H9J4 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC41.61■■■■■ 4.25
USP42Q9H9J4 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC41.6■■■■■ 4.25
USP42Q9H9J4 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC41.53■■■■■ 4.24
USP42Q9H9J4 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC41.16■■■■■ 4.18
USP42Q9H9J4 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC41.15■■■■■ 4.18
USP42Q9H9J4 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC41.12■■■■■ 4.17
USP42Q9H9J4 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC41.07■■■■■ 4.17
USP42Q9H9J4 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC41.07■■■■■ 4.16
USP42Q9H9J4 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC40.63■■■■■ 4.09
USP42Q9H9J4 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC40.63■■■■■ 4.09
USP42Q9H9J4 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC40.54■■■■■ 4.08
USP42Q9H9J4 HES6-203ENST00000409160 1600 ntTSL 2 BASIC40.48■■■■■ 4.07
USP42Q9H9J4 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC40.47■■■■■ 4.07
USP42Q9H9J4 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC40.45■■■■■ 4.07
USP42Q9H9J4 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC40.42■■■■■ 4.06
USP42Q9H9J4 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC40.37■■■■■ 4.05
USP42Q9H9J4 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC40.35■■■■■ 4.05
USP42Q9H9J4 INO80B-203ENST00000409917 796 ntTSL 2 BASIC40.32■■■■■ 4.04
USP42Q9H9J4 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC40.23■■■■■ 4.03
USP42Q9H9J4 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC40.18■■■■■ 4.02
USP42Q9H9J4 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC39.98■■■■□ 3.99
USP42Q9H9J4 ZNRF2P1-201ENST00000441407 443 ntBASIC39.94■■■■□ 3.98
USP42Q9H9J4 AC006077.2-201ENST00000623591 457 ntBASIC39.93■■■■□ 3.98
USP42Q9H9J4 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC39.9■■■■□ 3.98
USP42Q9H9J4 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC39.84■■■■□ 3.97
USP42Q9H9J4 AC015813.7-201ENST00000623294 581 ntBASIC39.68■■■■□ 3.94
USP42Q9H9J4 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC39.65■■■■□ 3.94
USP42Q9H9J4 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC39.63■■■■□ 3.93
USP42Q9H9J4 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC39.55■■■■□ 3.92
USP42Q9H9J4 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC39.42■■■■□ 3.9
USP42Q9H9J4 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC39.31■■■■□ 3.88
USP42Q9H9J4 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC39.06■■■■□ 3.84
USP42Q9H9J4 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC39.04■■■■□ 3.84
USP42Q9H9J4 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC39.03■■■■□ 3.84
USP42Q9H9J4 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC38.98■■■■□ 3.83
USP42Q9H9J4 AP002365.1-201ENST00000603448 772 ntBASIC38.96■■■■□ 3.83
USP42Q9H9J4 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC38.84■■■■□ 3.81
USP42Q9H9J4 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC38.8■■■■□ 3.8
USP42Q9H9J4 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC38.71■■■■□ 3.79
USP42Q9H9J4 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC38.7■■■■□ 3.79
USP42Q9H9J4 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC38.7■■■■□ 3.79
USP42Q9H9J4 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC38.65■■■■□ 3.78
USP42Q9H9J4 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC38.64■■■■□ 3.78
USP42Q9H9J4 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC38.63■■■■□ 3.78
USP42Q9H9J4 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC38.6■■■■□ 3.77
USP42Q9H9J4 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC38.6■■■■□ 3.77
USP42Q9H9J4 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC38.57■■■■□ 3.76
USP42Q9H9J4 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC38.54■■■■□ 3.76
USP42Q9H9J4 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC38.52■■■■□ 3.76
USP42Q9H9J4 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC38.52■■■■□ 3.76
USP42Q9H9J4 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC38.51■■■■□ 3.76
USP42Q9H9J4 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC38.42■■■■□ 3.74
USP42Q9H9J4 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC38.38■■■■□ 3.73
USP42Q9H9J4 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC38.33■■■■□ 3.73
USP42Q9H9J4 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC38.27■■■■□ 3.72
USP42Q9H9J4 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC38.27■■■■□ 3.72
USP42Q9H9J4 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC38.24■■■■□ 3.71
USP42Q9H9J4 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC38.23■■■■□ 3.71
USP42Q9H9J4 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC38.22■■■■□ 3.71
USP42Q9H9J4 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC38.21■■■■□ 3.71
USP42Q9H9J4 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC38.2■■■■□ 3.71
USP42Q9H9J4 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC38.14■■■■□ 3.7
USP42Q9H9J4 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC38.12■■■■□ 3.69
USP42Q9H9J4 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC38.09■■■■□ 3.69
USP42Q9H9J4 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC38.08■■■■□ 3.69
USP42Q9H9J4 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC38.06■■■■□ 3.68
USP42Q9H9J4 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC38.06■■■■□ 3.68
USP42Q9H9J4 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC38.05■■■■□ 3.68
USP42Q9H9J4 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC38.04■■■■□ 3.68
USP42Q9H9J4 DYNLL1-208ENST00000550178 581 ntBASIC38.04■■■■□ 3.68
USP42Q9H9J4 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC38.02■■■■□ 3.68
USP42Q9H9J4 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC38.01■■■■□ 3.67
USP42Q9H9J4 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC37.99■■■■□ 3.67
USP42Q9H9J4 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC37.99■■■■□ 3.67
USP42Q9H9J4 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC37.94■■■■□ 3.66
USP42Q9H9J4 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC37.92■■■■□ 3.66
USP42Q9H9J4 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC37.88■■■■□ 3.66
USP42Q9H9J4 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC37.87■■■■□ 3.65
USP42Q9H9J4 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC37.87■■■■□ 3.65
USP42Q9H9J4 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC37.8■■■■□ 3.64
USP42Q9H9J4 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC37.8■■■■□ 3.64
USP42Q9H9J4 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC37.78■■■■□ 3.64
USP42Q9H9J4 AL031258.1-201ENST00000623562 325 ntBASIC37.76■■■■□ 3.64
USP42Q9H9J4 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC37.74■■■■□ 3.63
USP42Q9H9J4 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC37.72■■■■□ 3.63
USP42Q9H9J4 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC37.72■■■■□ 3.63
USP42Q9H9J4 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC37.66■■■■□ 3.62
USP42Q9H9J4 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC37.65■■■■□ 3.62
USP42Q9H9J4 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC37.61■■■■□ 3.61
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms