Protein–RNA interactions for Protein: Q8NC44

RETREG2, Reticulophagy regulator 2, humanhuman

Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG2Q8NC44 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC38.2■■■■□ 3.71
RETREG2Q8NC44 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC37.83■■■■□ 3.65
RETREG2Q8NC44 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC37.28■■■■□ 3.56
RETREG2Q8NC44 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC37.24■■■■□ 3.55
RETREG2Q8NC44 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC37.21■■■■□ 3.55
RETREG2Q8NC44 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC36.97■■■■□ 3.51
RETREG2Q8NC44 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC36.96■■■■□ 3.51
RETREG2Q8NC44 AL356512.1-201ENST00000607453 1739 ntBASIC36.86■■■■□ 3.49
RETREG2Q8NC44 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC36.27■■■■□ 3.4
RETREG2Q8NC44 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC36.11■■■■□ 3.37
RETREG2Q8NC44 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC36.11■■■■□ 3.37
RETREG2Q8NC44 HES6-203ENST00000409160 1600 ntTSL 2 BASIC36■■■■□ 3.35
RETREG2Q8NC44 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC35.92■■■■□ 3.34
RETREG2Q8NC44 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC35.92■■■■□ 3.34
RETREG2Q8NC44 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC35.88■■■■□ 3.33
RETREG2Q8NC44 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC35.87■■■■□ 3.33
RETREG2Q8NC44 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC35.82■■■■□ 3.32
RETREG2Q8NC44 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC35.7■■■■□ 3.31
RETREG2Q8NC44 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC35.66■■■■□ 3.3
RETREG2Q8NC44 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC35.55■■■■□ 3.28
RETREG2Q8NC44 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC35.47■■■■□ 3.27
RETREG2Q8NC44 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC35.47■■■■□ 3.27
RETREG2Q8NC44 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC35.45■■■■□ 3.27
RETREG2Q8NC44 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC35.28■■■■□ 3.24
RETREG2Q8NC44 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC35.25■■■■□ 3.23
RETREG2Q8NC44 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC35.11■■■■□ 3.21
RETREG2Q8NC44 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC35.11■■■■□ 3.21
RETREG2Q8NC44 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC35.09■■■■□ 3.21
RETREG2Q8NC44 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC35.06■■■■□ 3.2
RETREG2Q8NC44 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC34.97■■■■□ 3.19
RETREG2Q8NC44 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC34.94■■■■□ 3.18
RETREG2Q8NC44 INO80B-203ENST00000409917 796 ntTSL 2 BASIC34.79■■■■□ 3.16
RETREG2Q8NC44 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC34.77■■■■□ 3.16
RETREG2Q8NC44 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC34.74■■■■□ 3.15
RETREG2Q8NC44 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC34.61■■■■□ 3.13
RETREG2Q8NC44 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC34.6■■■■□ 3.13
RETREG2Q8NC44 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC34.48■■■■□ 3.11
RETREG2Q8NC44 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC34.45■■■■□ 3.11
RETREG2Q8NC44 AC006077.2-201ENST00000623591 457 ntBASIC34.45■■■■□ 3.11
RETREG2Q8NC44 ZNRF2P1-201ENST00000441407 443 ntBASIC34.43■■■■□ 3.1
RETREG2Q8NC44 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC34.39■■■■□ 3.1
RETREG2Q8NC44 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC34.38■■■■□ 3.09
RETREG2Q8NC44 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC34.34■■■■□ 3.09
RETREG2Q8NC44 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC34.31■■■■□ 3.08
RETREG2Q8NC44 AC015813.7-201ENST00000623294 581 ntBASIC34.28■■■■□ 3.08
RETREG2Q8NC44 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC34.2■■■■□ 3.07
RETREG2Q8NC44 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC34.2■■■■□ 3.06
RETREG2Q8NC44 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC34.18■■■■□ 3.06
RETREG2Q8NC44 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC34.16■■■■□ 3.06
RETREG2Q8NC44 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC34.11■■■■□ 3.05
RETREG2Q8NC44 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC34.11■■■■□ 3.05
RETREG2Q8NC44 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC34.07■■■■□ 3.04
RETREG2Q8NC44 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC34.05■■■■□ 3.04
RETREG2Q8NC44 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC33.97■■■■□ 3.03
RETREG2Q8NC44 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC33.86■■■■□ 3.01
RETREG2Q8NC44 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC33.8■■■■□ 3
RETREG2Q8NC44 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC33.78■■■■□ 3
RETREG2Q8NC44 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC33.76■■■□□ 2.99
RETREG2Q8NC44 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC33.73■■■□□ 2.99
RETREG2Q8NC44 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC33.65■■■□□ 2.98
RETREG2Q8NC44 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC33.64■■■□□ 2.98
RETREG2Q8NC44 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC33.62■■■□□ 2.97
RETREG2Q8NC44 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC33.62■■■□□ 2.97
RETREG2Q8NC44 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC33.56■■■□□ 2.96
RETREG2Q8NC44 AP002365.1-201ENST00000603448 772 ntBASIC33.56■■■□□ 2.96
RETREG2Q8NC44 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC33.56■■■□□ 2.96
RETREG2Q8NC44 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC33.48■■■□□ 2.95
RETREG2Q8NC44 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC33.43■■■□□ 2.94
RETREG2Q8NC44 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC33.39■■■□□ 2.94
RETREG2Q8NC44 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC33.33■■■□□ 2.93
RETREG2Q8NC44 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC33.33■■■□□ 2.93
RETREG2Q8NC44 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC33.32■■■□□ 2.92
RETREG2Q8NC44 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC33.32■■■□□ 2.92
RETREG2Q8NC44 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC33.29■■■□□ 2.92
RETREG2Q8NC44 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC33.29■■■□□ 2.92
RETREG2Q8NC44 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC33.29■■■□□ 2.92
RETREG2Q8NC44 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC33.28■■■□□ 2.92
RETREG2Q8NC44 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC33.25■■■□□ 2.91
RETREG2Q8NC44 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC33.21■■■□□ 2.91
RETREG2Q8NC44 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC33.2■■■□□ 2.91
RETREG2Q8NC44 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC33.14■■■□□ 2.9
RETREG2Q8NC44 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC33.12■■■□□ 2.89
RETREG2Q8NC44 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC33.09■■■□□ 2.89
RETREG2Q8NC44 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC33.08■■■□□ 2.89
RETREG2Q8NC44 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC33.07■■■□□ 2.88
RETREG2Q8NC44 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC33.06■■■□□ 2.88
RETREG2Q8NC44 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
RETREG2Q8NC44 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC33.06■■■□□ 2.88
RETREG2Q8NC44 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC33.04■■■□□ 2.88
RETREG2Q8NC44 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC33.04■■■□□ 2.88
RETREG2Q8NC44 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC32.99■■■□□ 2.87
RETREG2Q8NC44 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC32.99■■■□□ 2.87
RETREG2Q8NC44 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC32.96■■■□□ 2.87
RETREG2Q8NC44 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC32.96■■■□□ 2.87
RETREG2Q8NC44 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
RETREG2Q8NC44 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC32.93■■■□□ 2.86
RETREG2Q8NC44 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC32.9■■■□□ 2.86
RETREG2Q8NC44 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
RETREG2Q8NC44 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC32.89■■■□□ 2.86
RETREG2Q8NC44 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC32.83■■■□□ 2.85
Retrieved 100 of 98,524 protein–RNA pairs in 8.3 ms