Protein–RNA interactions for Protein: Q8N3V7

SYNPO, Synaptopodin, humanhuman

Predictions only

Length 929 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPOQ8N3V7 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC35.24■■■■□ 3.23
SYNPOQ8N3V7 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC34.98■■■■□ 3.19
SYNPOQ8N3V7 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC34.46■■■■□ 3.11
SYNPOQ8N3V7 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC34.39■■■■□ 3.1
SYNPOQ8N3V7 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC34.06■■■■□ 3.04
SYNPOQ8N3V7 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC33.85■■■■□ 3.01
SYNPOQ8N3V7 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC33.77■■■■□ 3
SYNPOQ8N3V7 AL356512.1-201ENST00000607453 1739 ntBASIC33.57■■■□□ 2.96
SYNPOQ8N3V7 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC33.47■■■□□ 2.95
SYNPOQ8N3V7 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC33.31■■■□□ 2.92
SYNPOQ8N3V7 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC33.12■■■□□ 2.89
SYNPOQ8N3V7 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC33.11■■■□□ 2.89
SYNPOQ8N3V7 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC33.09■■■□□ 2.89
SYNPOQ8N3V7 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC32.98■■■□□ 2.87
SYNPOQ8N3V7 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC32.87■■■□□ 2.85
SYNPOQ8N3V7 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC32.78■■■□□ 2.84
SYNPOQ8N3V7 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
SYNPOQ8N3V7 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC32.71■■■□□ 2.83
SYNPOQ8N3V7 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
SYNPOQ8N3V7 HES6-203ENST00000409160 1600 ntTSL 2 BASIC32.42■■■□□ 2.78
SYNPOQ8N3V7 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC32.36■■■□□ 2.77
SYNPOQ8N3V7 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
SYNPOQ8N3V7 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC32.35■■■□□ 2.77
SYNPOQ8N3V7 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC32.31■■■□□ 2.76
SYNPOQ8N3V7 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC32.22■■■□□ 2.75
SYNPOQ8N3V7 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
SYNPOQ8N3V7 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
SYNPOQ8N3V7 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC32.09■■■□□ 2.73
SYNPOQ8N3V7 INO80B-203ENST00000409917 796 ntTSL 2 BASIC32.06■■■□□ 2.72
SYNPOQ8N3V7 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
SYNPOQ8N3V7 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC31.98■■■□□ 2.71
SYNPOQ8N3V7 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC31.95■■■□□ 2.71
SYNPOQ8N3V7 AC006077.2-201ENST00000623591 457 ntBASIC31.87■■■□□ 2.69
SYNPOQ8N3V7 ZNRF2P1-201ENST00000441407 443 ntBASIC31.82■■■□□ 2.68
SYNPOQ8N3V7 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC31.73■■■□□ 2.67
SYNPOQ8N3V7 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC31.65■■■□□ 2.66
SYNPOQ8N3V7 AC015813.7-201ENST00000623294 581 ntBASIC31.65■■■□□ 2.66
SYNPOQ8N3V7 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
SYNPOQ8N3V7 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
SYNPOQ8N3V7 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC31.33■■■□□ 2.61
SYNPOQ8N3V7 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC31.32■■■□□ 2.6
SYNPOQ8N3V7 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC31.16■■■□□ 2.58
SYNPOQ8N3V7 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
SYNPOQ8N3V7 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC31.14■■■□□ 2.58
SYNPOQ8N3V7 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
SYNPOQ8N3V7 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
SYNPOQ8N3V7 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
SYNPOQ8N3V7 AP002365.1-201ENST00000603448 772 ntBASIC30.99■■■□□ 2.55
SYNPOQ8N3V7 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC30.95■■■□□ 2.55
SYNPOQ8N3V7 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC30.95■■■□□ 2.54
SYNPOQ8N3V7 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC30.93■■■□□ 2.54
SYNPOQ8N3V7 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
SYNPOQ8N3V7 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC30.76■■■□□ 2.51
SYNPOQ8N3V7 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
SYNPOQ8N3V7 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC30.74■■■□□ 2.51
SYNPOQ8N3V7 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC30.74■■■□□ 2.51
SYNPOQ8N3V7 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC30.72■■■□□ 2.51
SYNPOQ8N3V7 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC30.71■■■□□ 2.51
SYNPOQ8N3V7 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
SYNPOQ8N3V7 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
SYNPOQ8N3V7 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC30.69■■■□□ 2.5
SYNPOQ8N3V7 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
SYNPOQ8N3V7 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC30.59■■■□□ 2.49
SYNPOQ8N3V7 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC30.59■■■□□ 2.49
SYNPOQ8N3V7 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC30.56■■■□□ 2.48
SYNPOQ8N3V7 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC30.55■■■□□ 2.48
SYNPOQ8N3V7 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
SYNPOQ8N3V7 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC30.52■■■□□ 2.48
SYNPOQ8N3V7 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
SYNPOQ8N3V7 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC30.45■■■□□ 2.47
SYNPOQ8N3V7 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
SYNPOQ8N3V7 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC30.38■■■□□ 2.45
SYNPOQ8N3V7 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
SYNPOQ8N3V7 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC30.33■■■□□ 2.45
SYNPOQ8N3V7 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC30.33■■■□□ 2.45
SYNPOQ8N3V7 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC30.32■■■□□ 2.44
SYNPOQ8N3V7 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC30.3■■■□□ 2.44
SYNPOQ8N3V7 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
SYNPOQ8N3V7 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC30.29■■■□□ 2.44
SYNPOQ8N3V7 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
SYNPOQ8N3V7 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
SYNPOQ8N3V7 DYNLL1-208ENST00000550178 581 ntBASIC30.24■■■□□ 2.43
SYNPOQ8N3V7 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC30.23■■■□□ 2.43
SYNPOQ8N3V7 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
SYNPOQ8N3V7 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
SYNPOQ8N3V7 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC30.15■■■□□ 2.42
SYNPOQ8N3V7 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC30.13■■■□□ 2.41
SYNPOQ8N3V7 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC30.13■■■□□ 2.41
SYNPOQ8N3V7 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC30.08■■■□□ 2.41
SYNPOQ8N3V7 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
SYNPOQ8N3V7 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC30.06■■■□□ 2.4
SYNPOQ8N3V7 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC30.06■■■□□ 2.4
SYNPOQ8N3V7 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
SYNPOQ8N3V7 AL031258.1-201ENST00000623562 325 ntBASIC30.04■■■□□ 2.4
SYNPOQ8N3V7 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
SYNPOQ8N3V7 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
SYNPOQ8N3V7 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC29.96■■■□□ 2.39
SYNPOQ8N3V7 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC29.95■■■□□ 2.39
SYNPOQ8N3V7 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
SYNPOQ8N3V7 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC29.92■■■□□ 2.38
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms