Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC42.02■■■■■ 4.32
COL1A1P02452 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC41.1■■■■■ 4.17
COL1A1P02452 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC40.83■■■■■ 4.13
COL1A1P02452 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC40.81■■■■■ 4.12
COL1A1P02452 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC40.67■■■■■ 4.1
COL1A1P02452 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC40.64■■■■■ 4.1
COL1A1P02452 AL356512.1-201ENST00000607453 1739 ntBASIC40.51■■■■■ 4.08
COL1A1P02452 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC40.5■■■■■ 4.07
COL1A1P02452 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC39.5■■■■□ 3.91
COL1A1P02452 HES6-203ENST00000409160 1600 ntTSL 2 BASIC39.47■■■■□ 3.91
COL1A1P02452 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC39.32■■■■□ 3.89
COL1A1P02452 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC39.27■■■■□ 3.88
COL1A1P02452 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC39.22■■■■□ 3.87
COL1A1P02452 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC39.21■■■■□ 3.87
COL1A1P02452 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC39.19■■■■□ 3.86
COL1A1P02452 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC39.18■■■■□ 3.86
COL1A1P02452 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC38.98■■■■□ 3.83
COL1A1P02452 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC38.92■■■■□ 3.82
COL1A1P02452 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC38.86■■■■□ 3.81
COL1A1P02452 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC38.83■■■■□ 3.81
COL1A1P02452 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC38.79■■■■□ 3.8
COL1A1P02452 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC38.59■■■■□ 3.77
COL1A1P02452 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC38.51■■■■□ 3.76
COL1A1P02452 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC38.46■■■■□ 3.75
COL1A1P02452 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC38.27■■■■□ 3.72
COL1A1P02452 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC38.06■■■■□ 3.68
COL1A1P02452 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC38.06■■■■□ 3.68
COL1A1P02452 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC37.96■■■■□ 3.67
COL1A1P02452 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC37.91■■■■□ 3.66
COL1A1P02452 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC37.9■■■■□ 3.66
COL1A1P02452 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC37.86■■■■□ 3.65
COL1A1P02452 INO80B-203ENST00000409917 796 ntTSL 2 BASIC37.78■■■■□ 3.64
COL1A1P02452 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC37.75■■■■□ 3.63
COL1A1P02452 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC37.73■■■■□ 3.63
COL1A1P02452 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC37.71■■■■□ 3.63
COL1A1P02452 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC37.71■■■■□ 3.63
COL1A1P02452 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC37.53■■■■□ 3.6
COL1A1P02452 AC006077.2-201ENST00000623591 457 ntBASIC37.42■■■■□ 3.58
COL1A1P02452 ZNRF2P1-201ENST00000441407 443 ntBASIC37.4■■■■□ 3.58
COL1A1P02452 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC37.38■■■■□ 3.57
COL1A1P02452 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC37.38■■■■□ 3.57
COL1A1P02452 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC37.28■■■■□ 3.56
COL1A1P02452 AC015813.7-201ENST00000623294 581 ntBASIC37.24■■■■□ 3.55
COL1A1P02452 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC37.18■■■■□ 3.54
COL1A1P02452 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC37.15■■■■□ 3.54
COL1A1P02452 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC36.95■■■■□ 3.51
COL1A1P02452 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC36.94■■■■□ 3.5
COL1A1P02452 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC36.89■■■■□ 3.5
COL1A1P02452 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC36.89■■■■□ 3.5
COL1A1P02452 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC36.84■■■■□ 3.49
COL1A1P02452 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC36.83■■■■□ 3.49
COL1A1P02452 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC36.83■■■■□ 3.49
COL1A1P02452 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC36.74■■■■□ 3.47
COL1A1P02452 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC36.67■■■■□ 3.46
COL1A1P02452 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC36.64■■■■□ 3.46
COL1A1P02452 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC36.62■■■■□ 3.45
COL1A1P02452 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC36.57■■■■□ 3.44
COL1A1P02452 AP002365.1-201ENST00000603448 772 ntBASIC36.5■■■■□ 3.43
COL1A1P02452 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC36.48■■■■□ 3.43
COL1A1P02452 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC36.47■■■■□ 3.43
COL1A1P02452 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC36.4■■■■□ 3.42
COL1A1P02452 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC36.39■■■■□ 3.42
COL1A1P02452 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC36.33■■■■□ 3.41
COL1A1P02452 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC36.24■■■■□ 3.39
COL1A1P02452 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC36.2■■■■□ 3.39
COL1A1P02452 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC36.19■■■■□ 3.38
COL1A1P02452 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC36.18■■■■□ 3.38
COL1A1P02452 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC36.16■■■■□ 3.38
COL1A1P02452 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC36.12■■■■□ 3.37
COL1A1P02452 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC36.11■■■■□ 3.37
COL1A1P02452 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC36.11■■■■□ 3.37
COL1A1P02452 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC36.1■■■■□ 3.37
COL1A1P02452 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC36.06■■■■□ 3.36
COL1A1P02452 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC36.05■■■■□ 3.36
COL1A1P02452 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC36.04■■■■□ 3.36
COL1A1P02452 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC36.04■■■■□ 3.36
COL1A1P02452 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC36.03■■■■□ 3.36
COL1A1P02452 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC36.01■■■■□ 3.36
COL1A1P02452 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC35.99■■■■□ 3.35
COL1A1P02452 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC35.98■■■■□ 3.35
COL1A1P02452 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC35.97■■■■□ 3.35
COL1A1P02452 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC35.96■■■■□ 3.35
COL1A1P02452 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC35.94■■■■□ 3.34
COL1A1P02452 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC35.83■■■■□ 3.33
COL1A1P02452 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC35.81■■■■□ 3.32
COL1A1P02452 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC35.76■■■■□ 3.31
COL1A1P02452 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC35.74■■■■□ 3.31
COL1A1P02452 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC35.74■■■■□ 3.31
COL1A1P02452 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC35.73■■■■□ 3.31
COL1A1P02452 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC35.69■■■■□ 3.3
COL1A1P02452 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC35.68■■■■□ 3.3
COL1A1P02452 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC35.67■■■■□ 3.3
COL1A1P02452 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC35.65■■■■□ 3.3
COL1A1P02452 DYNLL1-208ENST00000550178 581 ntBASIC35.65■■■■□ 3.3
COL1A1P02452 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC35.64■■■■□ 3.3
COL1A1P02452 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC35.63■■■■□ 3.29
COL1A1P02452 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC35.63■■■■□ 3.29
COL1A1P02452 ILK-212ENST00000532063 1617 ntTSL 2 BASIC35.62■■■■□ 3.29
COL1A1P02452 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC35.6■■■■□ 3.29
COL1A1P02452 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC35.6■■■■□ 3.29
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms