Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 ATP5B-203ENST00000547808 705 ntTSL 525.44■■□□□ 1.669e-22■□□□□ 8.6
U2AF1Q01081 ATP5B-207ENST00000551020 856 ntTSL 325.29■■□□□ 1.649e-22■□□□□ 8.6
U2AF1Q01081 TMEM135-204ENST00000526733 496 ntTSL 224.15■■□□□ 1.461e-7■□□□□ 8.6
U2AF1Q01081 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC23.74■■□□□ 1.391e-7■□□□□ 8.6
U2AF1Q01081 NKTR-203ENST00000442970 646 ntTSL 2 BASIC23.43■■□□□ 1.344e-10■□□□□ 8.6
U2AF1Q01081 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.314e-23■□□□□ 8.6
U2AF1Q01081 NEU1-207ENST00000480384 2214 ntTSL 223.14■■□□□ 1.294e-23■□□□□ 8.6
U2AF1Q01081 NKTR-214ENST00000478488 698 ntTSL 323.07■■□□□ 1.284e-10■□□□□ 8.6
U2AF1Q01081 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC22.76■■□□□ 1.238e-7■□□□□ 8.6
U2AF1Q01081 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC21.99■■□□□ 1.118e-7■□□□□ 8.6
U2AF1Q01081 EDC4-202ENST00000536072 2375 ntTSL 221.71■■□□□ 1.072e-11■□□□□ 8.6
U2AF1Q01081 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.029e-22■□□□□ 8.6
U2AF1Q01081 RNF5-204ENST00000487940 357 ntTSL 221.25■□□□□ 0.998e-7■□□□□ 8.6
U2AF1Q01081 NKTR-215ENST00000487466 2335 ntTSL 221.16■□□□□ 0.984e-10■□□□□ 8.6
U2AF1Q01081 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.887e-9■□□□□ 8.6
U2AF1Q01081 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC19.93■□□□□ 0.788e-7■□□□□ 8.6
U2AF1Q01081 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC19.81■□□□□ 0.761e-7■□□□□ 8.6
U2AF1Q01081 EDC4-208ENST00000574770 1425 ntTSL 519.37■□□□□ 0.692e-11■□□□□ 8.6
U2AF1Q01081 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC18.93■□□□□ 0.628e-7■□□□□ 8.6
U2AF1Q01081 SLC25A3-209ENST00000548046 550 ntTSL 418.89■□□□□ 0.617e-9■□□□□ 8.6
U2AF1Q01081 CHEK1-210ENST00000528276 1814 ntTSL 218.74■□□□□ 0.598e-7■□□□□ 8.6
U2AF1Q01081 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.572e-24■□□□□ 8.6
U2AF1Q01081 PRAME-209ENST00000439106 891 ntAPPRIS ALT2 TSL 318.56■□□□□ 0.562e-24■□□□□ 8.6
U2AF1Q01081 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.561e-7■□□□□ 8.6
U2AF1Q01081 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC18.39■□□□□ 0.537e-9■□□□□ 8.6
U2AF1Q01081 SLC25A3-213ENST00000550695 756 ntTSL 318.34■□□□□ 0.537e-9■□□□□ 8.6
U2AF1Q01081 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.482e-24■□□□□ 8.6
U2AF1Q01081 PRAME-202ENST00000398743 2196 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.472e-24■□□□□ 8.6
U2AF1Q01081 SLC25A3-206ENST00000547534 556 ntTSL 2 BASIC17.91■□□□□ 0.467e-9■□□□□ 8.6
U2AF1Q01081 RBM15-204ENST00000617047 3284 ntTSL 1 (best) BASIC17.83■□□□□ 0.448e-7■□□□□ 8.6
U2AF1Q01081 PRAME-211ENST00000476336 589 ntTSL 217.81■□□□□ 0.442e-24■□□□□ 8.6
U2AF1Q01081 SLC25A3-202ENST00000228318 1678 ntAPPRIS P4 TSL 5 BASIC17.69■□□□□ 0.427e-9■□□□□ 8.6
U2AF1Q01081 TFG-208ENST00000490574 1696 ntAPPRIS P3 TSL 3 BASIC17.36■□□□□ 0.374e-10■□□□□ 8.6
U2AF1Q01081 TFG-202ENST00000418917 1716 ntAPPRIS ALT1 TSL 3 BASIC17.33■□□□□ 0.364e-10■□□□□ 8.6
U2AF1Q01081 RBM15-201ENST00000369784 4244 ntTSL 1 (best) BASIC17.31■□□□□ 0.368e-7■□□□□ 8.6
U2AF1Q01081 KLHL24-211ENST00000476808 2126 ntTSL 2 BASIC17.29■□□□□ 0.368e-7■□□□□ 8.6
U2AF1Q01081 PRAME-206ENST00000406503 740 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.352e-24■□□□□ 8.6
U2AF1Q01081 PRAME-207ENST00000420709 705 ntAPPRIS ALT2 TSL 217.2■□□□□ 0.342e-24■□□□□ 8.6
U2AF1Q01081 CHEK1-203ENST00000428830 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.348e-7■□□□□ 8.6
U2AF1Q01081 NEU1-209ENST00000495807 4616 ntTSL 216.84■□□□□ 0.294e-23■□□□□ 8.6
U2AF1Q01081 PRAME-201ENST00000398741 2202 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.282e-24■□□□□ 8.6
U2AF1Q01081 PRAME-203ENST00000402697 2057 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.282e-24■□□□□ 8.6
U2AF1Q01081 PRAME-213ENST00000492657 2831 ntTSL 1 (best)16.74■□□□□ 0.272e-24■□□□□ 8.6
U2AF1Q01081 SLC25A3-212ENST00000549338 1285 ntAPPRIS ALT1 TSL 3 BASIC16.64■□□□□ 0.257e-9■□□□□ 8.6
U2AF1Q01081 SLC25A3-214ENST00000551123 1417 ntTSL 1 (best)16.61■□□□□ 0.257e-9■□□□□ 8.6
U2AF1Q01081 PRAME-204ENST00000403441 567 ntAPPRIS ALT2 TSL 316.46■□□□□ 0.232e-24■□□□□ 8.6
U2AF1Q01081 RBM15-205ENST00000618772 3431 ntTSL 1 (best) BASIC16.44■□□□□ 0.228e-7■□□□□ 8.6
U2AF1Q01081 RBM15-202ENST00000487146 3316 ntTSL 1 (best) BASIC16.1■□□□□ 0.178e-7■□□□□ 8.6
U2AF1Q01081 CHEK1-201ENST00000278916 1712 ntTSL 5 BASIC15.82■□□□□ 0.128e-7■□□□□ 8.6
U2AF1Q01081 PRAME-210ENST00000442481 581 ntTSL 315.43■□□□□ 0.062e-24■□□□□ 8.6
U2AF1Q01081 SLC25A3-203ENST00000401722 6087 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.087e-9■□□□□ 8.6
U2AF1Q01081 CHEK1-218ENST00000544373 1653 ntTSL 1 (best) BASIC14.36□□□□□ -0.118e-7■□□□□ 8.6
U2AF1Q01081 EDC4-207ENST00000573992 3934 ntTSL 1 (best)14.17□□□□□ -0.142e-11■□□□□ 8.6
U2AF1Q01081 KDELR2-205ENST00000463747 376 ntTSL 514.06□□□□□ -0.161e-7■□□□□ 8.6
U2AF1Q01081 CHEK1-204ENST00000438015 4153 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.178e-7■□□□□ 8.6
U2AF1Q01081 CHEK1-213ENST00000532449 4051 ntTSL 2 BASIC13.82□□□□□ -0.28e-7■□□□□ 8.6
U2AF1Q01081 KDELR2-203ENST00000454368 2478 ntTSL 213.58□□□□□ -0.241e-7■□□□□ 8.6
U2AF1Q01081 SLC25A3-204ENST00000546766 3236 ntTSL 1 (best)13.5□□□□□ -0.257e-9■□□□□ 8.6
U2AF1Q01081 CHEK1-206ENST00000524737 1799 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.258e-7■□□□□ 8.6
U2AF1Q01081 H2AFV-203ENST00000349299 596 ntTSL 2 BASIC12.95□□□□□ -0.348e-7■□□□□ 8.6
U2AF1Q01081 ATP5B-202ENST00000547250 840 ntTSL 512.42□□□□□ -0.429e-22■□□□□ 8.6
U2AF1Q01081 TMEM135-203ENST00000525018 753 ntTSL 511.62□□□□□ -0.551e-7■□□□□ 8.6
U2AF1Q01081 RARS-205ENST00000520421 396 ntTSL 511.43□□□□□ -0.581e-7■□□□□ 8.6
U2AF1Q01081 SLC25A3-205ENST00000547444 517 ntTSL 1 (best)11.19□□□□□ -0.627e-9■□□□□ 8.6
U2AF1Q01081 TFG-204ENST00000476228 1783 ntAPPRIS ALT1 TSL 1 (best) BASIC11.13□□□□□ -0.634e-10■□□□□ 8.6
U2AF1Q01081 ARHGEF12-201ENST00000356641 6891 ntTSL 5 BASIC9.92□□□□□ -0.821e-7■□□□□ 8.6
U2AF1Q01081 ATP5B-208ENST00000551182 457 ntTSL 29.27□□□□□ -0.939e-22■□□□□ 8.6
U2AF1Q01081 TMEM135-202ENST00000340353 3938 ntTSL 1 (best) BASIC9.26□□□□□ -0.931e-7■□□□□ 8.6
U2AF1Q01081 TMEM135-201ENST00000305494 2433 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.931e-7■□□□□ 8.6
U2AF1Q01081 ATP5B-204ENST00000548474 449 ntTSL 38.42□□□□□ -1.069e-22■□□□□ 8.6
U2AF1Q01081 TMEM135-206ENST00000529023 1095 ntTSL 28.28□□□□□ -1.081e-7■□□□□ 8.6
U2AF1Q01081 SLC25A3-208ENST00000547908 893 ntTSL 27.87□□□□□ -1.157e-9■□□□□ 8.6
U2AF1Q01081 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC7.58□□□□□ -1.28e-7■□□□□ 8.6
U2AF1Q01081 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.238e-7■□□□□ 8.6
U2AF1Q01081 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC7.34□□□□□ -1.231e-7■□□□□ 8.6
U2AF1Q01081 RARS-202ENST00000518757 580 ntTSL 56□□□□□ -1.451e-7■□□□□ 8.6
U2AF1Q01081 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.451e-7■□□□□ 8.6
U2AF1Q01081 RBM39-235ENST00000490354 436 ntTSL 25.92□□□□□ -1.468e-7■□□□□ 8.6
U2AF1Q01081 ARHGEF12-208ENST00000529970 3786 ntTSL 25.24□□□□□ -1.571e-7■□□□□ 8.6
U2AF1Q01081 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC4.52□□□□□ -1.694e-10■□□□□ 8.6
U2AF1Q01081 TMEM135-208ENST00000531800 201 ntTSL 53.75□□□□□ -1.811e-7■□□□□ 8.6
U2AF1Q01081 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC37.55■■■■□ 3.65e-8■□□□□ 8.6
U2AF1Q01081 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC36.94■■■■□ 3.55e-8■□□□□ 8.6
U2AF1Q01081 SDCCAG3-203ENST00000371723 865 ntTSL 234.75■■■■□ 3.155e-8■□□□□ 8.6
U2AF1Q01081 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC33.9■■■■□ 3.025e-8■□□□□ 8.6
U2AF1Q01081 SDCCAG3-209ENST00000468963 686 ntTSL 219.81■□□□□ 0.765e-8■□□□□ 8.6
U2AF1Q01081 STX2-204ENST00000540889 427 ntTSL 27.27□□□□□ -1.255e-7■□□□□ 8.6
U2AF1Q01081 APLP2-201ENST00000263574 3727 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.243e-37■□□□□ 8.6
U2AF1Q01081 APLP2-202ENST00000278756 3687 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.213e-37■□□□□ 8.6
U2AF1Q01081 WDR27-210ENST00000496752 1562 ntTSL 524.63■■□□□ 1.532e-7■□□□□ 8.5
U2AF1Q01081 SQSTM1-201ENST00000360718 2253 ntTSL 1 (best) BASIC17.3■□□□□ 0.362e-7■□□□□ 8.5
U2AF1Q01081 BCL6-205ENST00000438077 709 ntTSL 327.82■■■□□ 2.043e-6■□□□□ 8.5
U2AF1Q01081 TAOK2-206ENST00000570844 1721 ntTSL 227.49■■□□□ 1.993e-6■□□□□ 8.5
U2AF1Q01081 IER3-202ENST00000376377 1350 ntBASIC24.52■■□□□ 1.523e-6■□□□□ 8.5
U2AF1Q01081 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC22.23■■□□□ 1.153e-6■□□□□ 8.5
U2AF1Q01081 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.683e-6■□□□□ 8.5
U2AF1Q01081 SOX9-201ENST00000245479 3935 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.033e-6■□□□□ 8.5
U2AF1Q01081 ITIH3-205ENST00000465243 824 ntTSL 512.83□□□□□ -0.363e-6■□□□□ 8.5
U2AF1Q01081 ITIH3-203ENST00000463893 529 ntTSL 411.05□□□□□ -0.643e-6■□□□□ 8.5
U2AF1Q01081 SLC7A2-204ENST00000494857 7622 ntAPPRIS ALT1 TSL 5 BASIC10.44□□□□□ -0.743e-6■□□□□ 8.5
Retrieved 100 of 10,096 protein–RNA pairs in 39.6 ms