RNA–Protein interactions for RNA: ENST00000245479.2

SOX9-201, Transcript of SRY-box 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SOX9, Length 3,935 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9-201ENST00000245479 NISCHQ9Y2I1 1504 aa21.62■■□□□ 1.05
SOX9-201ENST00000245479 DCAF8L2P0C7V8 631 aa20.51■□□□□ 0.87
SOX9-201ENST00000245479 SHROOM4Q9ULL8 1493 aa20.34■□□□□ 0.85
SOX9-201ENST00000245479 SUPT5HO00267 1087 aaKnown RBP20.15■□□□□ 0.82
SOX9-201ENST00000245479 EHMT2Q96KQ7 1210 aa19.4■□□□□ 0.7
SOX9-201ENST00000245479 FAM9AQ8IZU1 332 aaPredicted RBP18.93■□□□□ 0.62
SOX9-201ENST00000245479 PCGF6Q9BYE7 350 aa18.91■□□□□ 0.62
SOX9-201ENST00000245479 LOC105371045A0A1W2PR82 267 aa18.76■□□□□ 0.59
SOX9-201ENST00000245479 CHIC1Q5VXU3 224 aa18.66■□□□□ 0.58
SOX9-201ENST00000245479 TTBK1Q5TCY1 1321 aaPredicted RBP18.64■□□□□ 0.57
SOX9-201ENST00000245479 PPARGC1BQ86YN6 1023 aaKnown RBP18.58■□□□□ 0.56
SOX9-201ENST00000245479 PELP1Q8IZL8 1130 aaKnown RBP18.45■□□□□ 0.54
SOX9-201ENST00000245479 HRCP23327 699 aa18.43■□□□□ 0.54
SOX9-201ENST00000245479 TRIM41Q8WV44 630 aa18.33■□□□□ 0.53
SOX9-201ENST00000245479 RANGAP1P46060 587 aaPredicted RBP18.23■□□□□ 0.51
SOX9-201ENST00000245479 MYO15BQ96JP2 1530 aa18.19■□□□□ 0.5
SOX9-201ENST00000245479 ZCCHC6Q5VYS8 1495 aaKnown RBP18.07■□□□□ 0.48
SOX9-201ENST00000245479 ABCC9O60706 1549 aa18.06■□□□□ 0.48
SOX9-201ENST00000245479 MYT1Q01538 1121 aa17.93■□□□□ 0.46
SOX9-201ENST00000245479 ZEB1P37275 1124 aaPredicted RBP17.9■□□□□ 0.46
SOX9-201ENST00000245479 PABPN1Q86U42 306 aaKnown RBP eCLIP17.89■□□□□ 0.45
SOX9-201ENST00000245479 TRIM26Q12899 539 aaPredicted RBP17.84■□□□□ 0.45
SOX9-201ENST00000245479 UBTFP17480 764 aaKnown RBP17.79■□□□□ 0.44
SOX9-201ENST00000245479 CENPBP07199 599 aaPredicted RBP17.78■□□□□ 0.44
SOX9-201ENST00000245479 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.77■□□□□ 0.44
SOX9-201ENST00000245479 CCER1Q8TC90 406 aaPredicted RBP17.76■□□□□ 0.43
SOX9-201ENST00000245479 SCRIBQ14160 1630 aa17.73■□□□□ 0.43
SOX9-201ENST00000245479 CCDC180Q9P1Z9 1646 aa17.57■□□□□ 0.4
SOX9-201ENST00000245479 YTHDC1Q96MU7 727 aaKnown RBP17.53■□□□□ 0.4
SOX9-201ENST00000245479 HNRNPUL2Q1KMD3 747 aaKnown RBP17.53■□□□□ 0.4
SOX9-201ENST00000245479 RSF1Q96T23 1441 aaPredicted RBP17.46■□□□□ 0.39
SOX9-201ENST00000245479 APLP2Q06481 763 aa17.43■□□□□ 0.38
SOX9-201ENST00000245479 ATP1B4Q9UN42 357 aaPredicted RBP17.42■□□□□ 0.38
SOX9-201ENST00000245479 CECR2Q9BXF3 1484 aa17.41■□□□□ 0.38
SOX9-201ENST00000245479 ITGAEP38570 1179 aa17.4■□□□□ 0.38
SOX9-201ENST00000245479 SCAF1Q9H7N4 1312 aaKnown RBP17.34■□□□□ 0.37
SOX9-201ENST00000245479 GTF3C3Q9Y5Q9 886 aa17.33■□□□□ 0.36
SOX9-201ENST00000245479 ACIN1Q9UKV3 1341 aaKnown RBP17.23■□□□□ 0.35
SOX9-201ENST00000245479 DIEXFQ68CQ4 756 aaKnown RBP17.21■□□□□ 0.35
SOX9-201ENST00000245479 RB1CC1Q8TDY2 1594 aa17.2■□□□□ 0.34
SOX9-201ENST00000245479 DCAF1Q9Y4B6 1507 aa17.19■□□□□ 0.34
SOX9-201ENST00000245479 CSRNP3Q8WYN3 585 aa17.11■□□□□ 0.33
SOX9-201ENST00000245479 MROH2BQ7Z745 1585 aa17.09■□□□□ 0.33
SOX9-201ENST00000245479 NEUROD1Q13562 356 aa17.07■□□□□ 0.32
SOX9-201ENST00000245479 P3H3Q8IVL6 736 aa17.02■□□□□ 0.32
SOX9-201ENST00000245479 SOGA1O94964 1423 aa16.97■□□□□ 0.31
SOX9-201ENST00000245479 ABCC8Q09428 1581 aa16.95■□□□□ 0.3
SOX9-201ENST00000245479 ERICH6Q7L0X2 663 aa16.95■□□□□ 0.3
SOX9-201ENST00000245479 WIZO95785 1651 aa16.92■□□□□ 0.3
SOX9-201ENST00000245479 CNGB1Q14028 1251 aaPredicted RBP16.89■□□□□ 0.29
SOX9-201ENST00000245479 CCDC88BA6NC98 1476 aa16.88■□□□□ 0.29
SOX9-201ENST00000245479 ARID3CA6NKF2 412 aa16.87■□□□□ 0.29
SOX9-201ENST00000245479 RUSC2Q8N2Y8 1516 aa16.82■□□□□ 0.28
SOX9-201ENST00000245479 FAM50AQ14320 339 aaKnown RBP16.8■□□□□ 0.28
SOX9-201ENST00000245479 NEFLP07196 543 aa16.79■□□□□ 0.28
SOX9-201ENST00000245479 CEP162Q5TB80 1403 aa16.79■□□□□ 0.28
SOX9-201ENST00000245479 HIRIP3Q9BW71 556 aaPredicted RBP16.75■□□□□ 0.27
SOX9-201ENST00000245479 ZNF316A6NFI3 1004 aaPredicted RBP16.74■□□□□ 0.27
SOX9-201ENST00000245479 MIER1Q8N108 512 aa16.72■□□□□ 0.27
SOX9-201ENST00000245479 NACADO15069 1562 aa16.7■□□□□ 0.26
SOX9-201ENST00000245479 BCANQ96GW7 911 aa16.65■□□□□ 0.26
SOX9-201ENST00000245479 WRNQ14191 1432 aaPredicted RBP eCLIP16.63■□□□□ 0.25
SOX9-201ENST00000245479 CLIP1P30622 1438 aa16.6■□□□□ 0.25
SOX9-201ENST00000245479 KANK4Q5T7N3 995 aaPredicted RBP16.58■□□□□ 0.25
SOX9-201ENST00000245479 BAZ1AQ9NRL2 1556 aaPredicted RBP16.58■□□□□ 0.24
SOX9-201ENST00000245479 POLR3GLQ9BT43 218 aa16.57■□□□□ 0.24
SOX9-201ENST00000245479 TNIKQ9UKE5 1360 aa16.51■□□□□ 0.23
SOX9-201ENST00000245479 SENP3-EIF4A1A0A087X0R7 540 aa16.46■□□□□ 0.23
SOX9-201ENST00000245479 BAZ1BQ9UIG0 1483 aaKnown RBP16.45■□□□□ 0.22
SOX9-201ENST00000245479 DDX10Q13206 875 aaKnown RBP16.45■□□□□ 0.22
SOX9-201ENST00000245479 GOLGA3Q08378 1498 aa16.44■□□□□ 0.22
SOX9-201ENST00000245479 SIN3AQ96ST3 1273 aa16.44■□□□□ 0.22
SOX9-201ENST00000245479 CHIC2Q9UKJ5 165 aa16.44■□□□□ 0.22
SOX9-201ENST00000245479 FBLN2P98095 1184 aa16.41■□□□□ 0.22
SOX9-201ENST00000245479 TRIM52Q96A61 297 aa16.41■□□□□ 0.22
SOX9-201ENST00000245479 RAPGEF2Q9Y4G8 1499 aa16.38■□□□□ 0.21
SOX9-201ENST00000245479 ANP32EQ9BTT0 268 aa16.36■□□□□ 0.21
SOX9-201ENST00000245479 ZNF326Q5BKZ1 582 aaKnown RBP16.34■□□□□ 0.21
SOX9-201ENST00000245479 SMARCA4P51532 1647 aa16.33■□□□□ 0.21
SOX9-201ENST00000245479 KCNH8Q96L42 1107 aa16.33■□□□□ 0.21
SOX9-201ENST00000245479 TOP2AP11388 1531 aaKnown RBP16.33■□□□□ 0.2
SOX9-201ENST00000245479 CLSPNQ9HAW4 1339 aa16.33■□□□□ 0.2
SOX9-201ENST00000245479 BCL11AQ9H165 835 aa16.31■□□□□ 0.2
SOX9-201ENST00000245479 SMARCA2P51531 1590 aa16.31■□□□□ 0.2
SOX9-201ENST00000245479 CEP164Q9UPV0 1460 aa16.28■□□□□ 0.2
SOX9-201ENST00000245479 FKBP8Q14318 412 aa16.27■□□□□ 0.19
SOX9-201ENST00000245479 RRP7BPQ9NSQ0 103 aa16.25■□□□□ 0.19
SOX9-201ENST00000245479 ZNF777Q9ULD5 760 aaPredicted RBP16.24■□□□□ 0.19
SOX9-201ENST00000245479 ATAD2BQ9ULI0 1458 aa16.24■□□□□ 0.19
SOX9-201ENST00000245479 IRX6P78412 446 aaPredicted RBP16.23■□□□□ 0.19
SOX9-201ENST00000245479 EEA1Q15075 1411 aa16.2■□□□□ 0.18
SOX9-201ENST00000245479 DNAJC5BQ9UF47 199 aa16.19■□□□□ 0.18
SOX9-201ENST00000245479 VPS8Q8N3P4 1428 aa16.19■□□□□ 0.18
SOX9-201ENST00000245479 CDK11AQ9UQ88 783 aaPredicted RBP16.18■□□□□ 0.18
SOX9-201ENST00000245479 RTL5Q5HYW3 569 aaPredicted RBP16.17■□□□□ 0.18
SOX9-201ENST00000245479 SUPT16HQ9Y5B9 1047 aaKnown RBP16.17■□□□□ 0.18
SOX9-201ENST00000245479 CUX2O14529 1486 aa16.16■□□□□ 0.18
SOX9-201ENST00000245479 FOXD1Q16676 465 aa16.15■□□□□ 0.18
SOX9-201ENST00000245479 KIF27Q86VH2 1401 aa16.13■□□□□ 0.17
SOX9-201ENST00000245479 SYNJ1O43426 1573 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms