Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HNF4AP41235 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
HNF4AP41235 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
HNF4AP41235 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
HNF4AP41235 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.47■□□□□ 0.55
HNF4AP41235 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.47■□□□□ 0.55
HNF4AP41235 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.47■□□□□ 0.55
HNF4AP41235 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC18.47■□□□□ 0.55
HNF4AP41235 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HNF4AP41235 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HNF4AP41235 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HNF4AP41235 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
HNF4AP41235 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HNF4AP41235 MME-217ENST00000616757 1315 ntTSL 5 BASIC18.47■□□□□ 0.55
HNF4AP41235 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
HNF4AP41235 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
HNF4AP41235 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
HNF4AP41235 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.46■□□□□ 0.55
HNF4AP41235 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
HNF4AP41235 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
HNF4AP41235 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HNF4AP41235 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HNF4AP41235 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC18.46■□□□□ 0.55
HNF4AP41235 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.46■□□□□ 0.55
HNF4AP41235 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HNF4AP41235 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HNF4AP41235 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
HNF4AP41235 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.46■□□□□ 0.55
HNF4AP41235 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
HNF4AP41235 USP36-216ENST00000589424 970 ntTSL 5 BASIC18.46■□□□□ 0.55
HNF4AP41235 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.46■□□□□ 0.55
HNF4AP41235 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HNF4AP41235 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
HNF4AP41235 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HNF4AP41235 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HNF4AP41235 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HNF4AP41235 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HNF4AP41235 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
HNF4AP41235 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HNF4AP41235 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.46■□□□□ 0.55
HNF4AP41235 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
HNF4AP41235 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.54
HNF4AP41235 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HNF4AP41235 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
HNF4AP41235 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
HNF4AP41235 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HNF4AP41235 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
HNF4AP41235 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HNF4AP41235 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HNF4AP41235 BAALC-201ENST00000297574 801 ntTSL 3 BASIC18.45■□□□□ 0.54
HNF4AP41235 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HNF4AP41235 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
HNF4AP41235 RPS2P4-201ENST00000476944 856 ntBASIC18.45■□□□□ 0.54
HNF4AP41235 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HNF4AP41235 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.45■□□□□ 0.54
HNF4AP41235 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.45■□□□□ 0.54
HNF4AP41235 AL445675.2-201ENST00000620291 557 ntBASIC18.45■□□□□ 0.54
HNF4AP41235 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HNF4AP41235 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
HNF4AP41235 AL049812.1-201ENST00000432563 2267 ntBASIC18.45■□□□□ 0.54
HNF4AP41235 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HNF4AP41235 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.45■□□□□ 0.54
HNF4AP41235 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HNF4AP41235 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
HNF4AP41235 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
HNF4AP41235 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
HNF4AP41235 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HNF4AP41235 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HNF4AP41235 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HNF4AP41235 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.44■□□□□ 0.54
HNF4AP41235 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
HNF4AP41235 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HNF4AP41235 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.44■□□□□ 0.54
HNF4AP41235 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.44■□□□□ 0.54
HNF4AP41235 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HNF4AP41235 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.44■□□□□ 0.54
HNF4AP41235 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC18.44■□□□□ 0.54
HNF4AP41235 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HNF4AP41235 RARRES2P10-201ENST00000564312 460 ntBASIC18.44■□□□□ 0.54
HNF4AP41235 AF186192.3-201ENST00000583427 947 ntBASIC18.44■□□□□ 0.54
HNF4AP41235 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC18.44■□□□□ 0.54
HNF4AP41235 AL353708.3-201ENST00000610272 989 ntBASIC18.44■□□□□ 0.54
HNF4AP41235 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HNF4AP41235 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HNF4AP41235 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.44■□□□□ 0.54
HNF4AP41235 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.44■□□□□ 0.54
HNF4AP41235 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HNF4AP41235 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.44■□□□□ 0.54
HNF4AP41235 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.44■□□□□ 0.54
HNF4AP41235 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
HNF4AP41235 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
HNF4AP41235 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HNF4AP41235 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
HNF4AP41235 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HNF4AP41235 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
HNF4AP41235 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HNF4AP41235 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
HNF4AP41235 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HNF4AP41235 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HNF4AP41235 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms