RNA–Protein interactions for RNA: ENST00000372237.7

TMEM53-202, Transcript of transmembrane protein 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM53, Length 2,310 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM53-202ENST00000372237 NISCHQ9Y2I1 1504 aa39.77■■■■□ 3.96
TMEM53-202ENST00000372237 CCDC180Q9P1Z9 1646 aa34.28■■■■□ 3.08
TMEM53-202ENST00000372237 SHROOM4Q9ULL8 1493 aa33.69■■■□□ 2.98
TMEM53-202ENST00000372237 ZCCHC6Q5VYS8 1495 aaKnown RBP33.49■■■□□ 2.95
TMEM53-202ENST00000372237 SUPT5HO00267 1087 aaKnown RBP33.1■■■□□ 2.89
TMEM53-202ENST00000372237 DCAF8L2P0C7V8 631 aa32.95■■■□□ 2.86
TMEM53-202ENST00000372237 DCAF1Q9Y4B6 1507 aa32.79■■■□□ 2.84
TMEM53-202ENST00000372237 ABCC9O60706 1549 aa32.26■■■□□ 2.76
TMEM53-202ENST00000372237 CHIC1Q5VXU3 224 aa32.22■■■□□ 2.75
TMEM53-202ENST00000372237 MYO15BQ96JP2 1530 aa32.21■■■□□ 2.75
TMEM53-202ENST00000372237 NACADO15069 1562 aa31.91■■■□□ 2.7
TMEM53-202ENST00000372237 SCRIBQ14160 1630 aa31.77■■■□□ 2.68
TMEM53-202ENST00000372237 RB1CC1Q8TDY2 1594 aa31.51■■■□□ 2.64
TMEM53-202ENST00000372237 HRCP23327 699 aa31.38■■■□□ 2.61
TMEM53-202ENST00000372237 PCGF6Q9BYE7 350 aa31.31■■■□□ 2.6
TMEM53-202ENST00000372237 RSF1Q96T23 1441 aaPredicted RBP31.27■■■□□ 2.6
TMEM53-202ENST00000372237 LOC105371045A0A1W2PR82 267 aa31.24■■■□□ 2.59
TMEM53-202ENST00000372237 CECR2Q9BXF3 1484 aa30.98■■■□□ 2.55
TMEM53-202ENST00000372237 UNC13AQ9UPW8 1703 aa30.89■■■□□ 2.53
TMEM53-202ENST00000372237 TRIM41Q8WV44 630 aa30.85■■■□□ 2.53
TMEM53-202ENST00000372237 MROH2BQ7Z745 1585 aa30.8■■■□□ 2.52
TMEM53-202ENST00000372237 TRIM26Q12899 539 aaPredicted RBP30.74■■■□□ 2.51
TMEM53-202ENST00000372237 PPARGC1BQ86YN6 1023 aaKnown RBP30.65■■■□□ 2.5
TMEM53-202ENST00000372237 PABPN1Q86U42 306 aaKnown RBP eCLIP30.64■■■□□ 2.5
TMEM53-202ENST00000372237 BICRAQ9NZM4 1560 aa30.64■■■□□ 2.49
TMEM53-202ENST00000372237 BAZ1AQ9NRL2 1556 aaPredicted RBP30.63■■■□□ 2.49
TMEM53-202ENST00000372237 FAM9AQ8IZU1 332 aaPredicted RBP30.56■■■□□ 2.48
TMEM53-202ENST00000372237 WIZO95785 1651 aa30.56■■■□□ 2.48
TMEM53-202ENST00000372237 SMARCA4P51532 1647 aa30.43■■■□□ 2.46
TMEM53-202ENST00000372237 EHMT2Q96KQ7 1210 aa30.27■■■□□ 2.44
TMEM53-202ENST00000372237 EIF4G1Q04637 1599 aaKnown RBP30.17■■■□□ 2.42
TMEM53-202ENST00000372237 TOP2AP11388 1531 aaKnown RBP30.17■■■□□ 2.42
TMEM53-202ENST00000372237 ZEB1P37275 1124 aaPredicted RBP30.13■■■□□ 2.41
TMEM53-202ENST00000372237 PEG3Q9GZU2 1588 aa30.01■■■□□ 2.39
TMEM53-202ENST00000372237 CCDC88BA6NC98 1476 aa29.98■■■□□ 2.39
TMEM53-202ENST00000372237 SMARCA2P51531 1590 aa29.94■■■□□ 2.38
TMEM53-202ENST00000372237 ABCC8Q09428 1581 aa29.89■■■□□ 2.38
TMEM53-202ENST00000372237 ATAD2BQ9ULI0 1458 aa29.89■■■□□ 2.38
TMEM53-202ENST00000372237 BAZ1BQ9UIG0 1483 aaKnown RBP29.72■■■□□ 2.35
TMEM53-202ENST00000372237 SOGA1O94964 1423 aa29.62■■■□□ 2.33
TMEM53-202ENST00000372237 EEA1Q15075 1411 aa29.56■■■□□ 2.32
TMEM53-202ENST00000372237 WRNQ14191 1432 aaPredicted RBP eCLIP29.55■■■□□ 2.32
TMEM53-202ENST00000372237 CEP162Q5TB80 1403 aa29.55■■■□□ 2.32
TMEM53-202ENST00000372237 NCAPD3P42695 1498 aa29.53■■■□□ 2.32
TMEM53-202ENST00000372237 TNIKQ9UKE5 1360 aa29.51■■■□□ 2.31
TMEM53-202ENST00000372237 CSRNP3Q8WYN3 585 aa29.49■■■□□ 2.31
TMEM53-202ENST00000372237 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.45■■■□□ 2.31
TMEM53-202ENST00000372237 RUSC2Q8N2Y8 1516 aa29.45■■■□□ 2.3
TMEM53-202ENST00000372237 HMGXB3Q12766 1538 aa29.44■■■□□ 2.3
TMEM53-202ENST00000372237 CCER1Q8TC90 406 aaPredicted RBP29.42■■■□□ 2.3
TMEM53-202ENST00000372237 UBTFP17480 764 aaKnown RBP29.39■■■□□ 2.3
TMEM53-202ENST00000372237 GOLGA3Q08378 1498 aa29.34■■■□□ 2.29
TMEM53-202ENST00000372237 TTBK1Q5TCY1 1321 aaPredicted RBP29.33■■■□□ 2.29
TMEM53-202ENST00000372237 SYNJ1O43426 1573 aa29.25■■■□□ 2.27
TMEM53-202ENST00000372237 CEP164Q9UPV0 1460 aa29.17■■■□□ 2.26
TMEM53-202ENST00000372237 KIF21BO75037 1637 aa29.14■■■□□ 2.26
TMEM53-202ENST00000372237 CC2D2AQ9P2K1 1620 aa29.12■■■□□ 2.25
TMEM53-202ENST00000372237 CFTRP13569 1480 aa29.02■■■□□ 2.24
TMEM53-202ENST00000372237 CLIP1P30622 1438 aa28.99■■■□□ 2.23
TMEM53-202ENST00000372237 SCAF1Q9H7N4 1312 aaKnown RBP28.92■■■□□ 2.22
TMEM53-202ENST00000372237 TOP2BQ02880 1626 aa28.91■■■□□ 2.22
TMEM53-202ENST00000372237 RAPGEF2Q9Y4G8 1499 aa28.91■■■□□ 2.22
TMEM53-202ENST00000372237 VPS8Q8N3P4 1428 aa28.89■■■□□ 2.21
TMEM53-202ENST00000372237 DIEXFQ68CQ4 756 aaKnown RBP28.88■■■□□ 2.21
TMEM53-202ENST00000372237 CADPSQ9ULU8 1353 aa28.85■■■□□ 2.21
TMEM53-202ENST00000372237 BIVM-ERCC5R4GMW8 1640 aa28.81■■■□□ 2.2
TMEM53-202ENST00000372237 APLP2Q06481 763 aa28.79■■■□□ 2.2
TMEM53-202ENST00000372237 HNRNPUL2Q1KMD3 747 aaKnown RBP28.75■■■□□ 2.19
TMEM53-202ENST00000372237 CUX1P39880 1505 aa28.75■■■□□ 2.19
TMEM53-202ENST00000372237 RANGAP1P46060 587 aaPredicted RBP28.73■■■□□ 2.19
TMEM53-202ENST00000372237 ACIN1Q9UKV3 1341 aaKnown RBP28.67■■■□□ 2.18
TMEM53-202ENST00000372237 PRDM2Q13029 1718 aa28.67■■■□□ 2.18
TMEM53-202ENST00000372237 ERICH3Q5RHP9 1530 aa28.66■■■□□ 2.18
TMEM53-202ENST00000372237 ZNF316A6NFI3 1004 aaPredicted RBP28.65■■■□□ 2.18
TMEM53-202ENST00000372237 PRXQ9BXM0 1461 aa28.63■■■□□ 2.17
TMEM53-202ENST00000372237 NEUROD1Q13562 356 aa28.6■■■□□ 2.17
TMEM53-202ENST00000372237 CENPBP07199 599 aaPredicted RBP28.56■■■□□ 2.16
TMEM53-202ENST00000372237 DNAJC5BQ9UF47 199 aa28.52■■■□□ 2.16
TMEM53-202ENST00000372237 FANCD2Q9BXW9 1451 aa28.51■■■□□ 2.15
TMEM53-202ENST00000372237 KIF27Q86VH2 1401 aa28.5■■■□□ 2.15
TMEM53-202ENST00000372237 ARAP1Q96P48 1450 aa28.49■■■□□ 2.15
TMEM53-202ENST00000372237 NESP48681 1621 aa28.49■■■□□ 2.15
TMEM53-202ENST00000372237 PELP1Q8IZL8 1130 aaKnown RBP28.48■■■□□ 2.15
TMEM53-202ENST00000372237 LAMC3Q9Y6N6 1575 aa28.36■■■□□ 2.13
TMEM53-202ENST00000372237 FGD5Q6ZNL6 1462 aa28.36■■■□□ 2.13
TMEM53-202ENST00000372237 KANK4Q5T7N3 995 aaPredicted RBP28.34■■■□□ 2.13
TMEM53-202ENST00000372237 GTF3C3Q9Y5Q9 886 aa28.34■■■□□ 2.13
TMEM53-202ENST00000372237 CUX2O14529 1486 aa28.29■■■□□ 2.12
TMEM53-202ENST00000372237 CLSPNQ9HAW4 1339 aa28.26■■■□□ 2.12
TMEM53-202ENST00000372237 DNMBPQ6XZF7 1577 aa28.26■■■□□ 2.11
TMEM53-202ENST00000372237 ARHGAP35Q9NRY4 1499 aa28.25■■■□□ 2.11
TMEM53-202ENST00000372237 TOPBP1Q92547 1522 aa28.24■■■□□ 2.11
TMEM53-202ENST00000372237 IGF1RP08069 1367 aa28.22■■■□□ 2.11
TMEM53-202ENST00000372237 DHX57Q6P158 1386 aaKnown RBP28.22■■■□□ 2.11
TMEM53-202ENST00000372237 RRBP1Q9P2E9 1410 aaKnown RBP28.22■■■□□ 2.11
TMEM53-202ENST00000372237 MIER1Q8N108 512 aa28.21■■■□□ 2.11
TMEM53-202ENST00000372237 PDS5BQ9NTI5 1447 aa28.21■■■□□ 2.11
TMEM53-202ENST00000372237 YTHDC1Q96MU7 727 aaKnown RBP28.17■■■□□ 2.1
TMEM53-202ENST00000372237 POLA1P09884 1462 aaPredicted RBP28.17■■■□□ 2.1
TMEM53-202ENST00000372237 RAD54L2Q9Y4B4 1467 aa28.14■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms