RNA–Protein interactions for RNA: ENST00000636549.1

CACNA1A-227, Transcript of calcium voltage-gated channel subunit alpha1 A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CACNA1A, Length 6,792 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1A-227ENST00000636549 DCAF8L2P0C7V8 631 aa31.8■■■□□ 2.68
CACNA1A-227ENST00000636549 EHMT2Q96KQ7 1210 aa30.09■■■□□ 2.41
CACNA1A-227ENST00000636549 SUPT5HO00267 1087 aaKnown RBP29.28■■■□□ 2.28
CACNA1A-227ENST00000636549 TTBK1Q5TCY1 1321 aaPredicted RBP28.89■■■□□ 2.22
CACNA1A-227ENST00000636549 SHROOM4Q9ULL8 1493 aa28.73■■■□□ 2.19
CACNA1A-227ENST00000636549 RANGAP1P46060 587 aaPredicted RBP28.52■■■□□ 2.16
CACNA1A-227ENST00000636549 PELP1Q8IZL8 1130 aaKnown RBP28.19■■■□□ 2.1
CACNA1A-227ENST00000636549 APLP2Q06481 763 aa28.19■■■□□ 2.1
CACNA1A-227ENST00000636549 ATP1B4Q9UN42 357 aaPredicted RBP28.18■■■□□ 2.1
CACNA1A-227ENST00000636549 FAM9AQ8IZU1 332 aaPredicted RBP28.15■■■□□ 2.1
CACNA1A-227ENST00000636549 ERICH6Q7L0X2 663 aa27.91■■■□□ 2.06
CACNA1A-227ENST00000636549 CHIC1Q5VXU3 224 aa27.64■■■□□ 2.02
CACNA1A-227ENST00000636549 PCGF6Q9BYE7 350 aa27.64■■■□□ 2.01
CACNA1A-227ENST00000636549 MYT1Q01538 1121 aa27.5■■□□□ 1.99
CACNA1A-227ENST00000636549 MYT1LQ9UL68 1186 aa27.45■■□□□ 1.98
CACNA1A-227ENST00000636549 CNGB1Q14028 1251 aaPredicted RBP27.34■■□□□ 1.97
CACNA1A-227ENST00000636549 YTHDC1Q96MU7 727 aaKnown RBP27.33■■□□□ 1.97
CACNA1A-227ENST00000636549 POLR3GLQ9BT43 218 aa27.22■■□□□ 1.95
CACNA1A-227ENST00000636549 PPARGC1BQ86YN6 1023 aaKnown RBP27.12■■□□□ 1.93
CACNA1A-227ENST00000636549 CCER1Q8TC90 406 aaPredicted RBP27.06■■□□□ 1.92
CACNA1A-227ENST00000636549 SLC4A1APQ9BWU0 796 aaKnown RBP26.97■■□□□ 1.91
CACNA1A-227ENST00000636549 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.88■■□□□ 1.89
CACNA1A-227ENST00000636549 HNRNPUL2Q1KMD3 747 aaKnown RBP26.88■■□□□ 1.89
CACNA1A-227ENST00000636549 UBTFP17480 764 aaKnown RBP26.87■■□□□ 1.89
CACNA1A-227ENST00000636549 ITGAEP38570 1179 aa26.78■■□□□ 1.88
CACNA1A-227ENST00000636549 NEFLP07196 543 aa26.75■■□□□ 1.87
CACNA1A-227ENST00000636549 CENPBP07199 599 aaPredicted RBP26.68■■□□□ 1.86
CACNA1A-227ENST00000636549 NISCHQ9Y2I1 1504 aa26.63■■□□□ 1.85
CACNA1A-227ENST00000636549 DAXXQ9UER7 740 aaPredicted RBP26.58■■□□□ 1.85
CACNA1A-227ENST00000636549 TRIM41Q8WV44 630 aa26.57■■□□□ 1.84
CACNA1A-227ENST00000636549 BCL11AQ9H165 835 aa26.52■■□□□ 1.84
CACNA1A-227ENST00000636549 SLC24A1O60721 1099 aa26.36■■□□□ 1.81
CACNA1A-227ENST00000636549 PLPPR3Q6T4P5 718 aa26.14■■□□□ 1.77
CACNA1A-227ENST00000636549 CLSPNQ9HAW4 1339 aa26.13■■□□□ 1.77
CACNA1A-227ENST00000636549 ZNF316A6NFI3 1004 aaPredicted RBP25.96■■□□□ 1.75
CACNA1A-227ENST00000636549 BCANQ96GW7 911 aa25.94■■□□□ 1.74
CACNA1A-227ENST00000636549 ZEB1P37275 1124 aaPredicted RBP25.85■■□□□ 1.73
CACNA1A-227ENST00000636549 ZNF326Q5BKZ1 582 aaKnown RBP25.72■■□□□ 1.71
CACNA1A-227ENST00000636549 TRIM52Q96A61 297 aa25.63■■□□□ 1.69
CACNA1A-227ENST00000636549 FBLN2P98095 1184 aa25.62■■□□□ 1.69
CACNA1A-227ENST00000636549 FAM50AQ14320 339 aaKnown RBP25.6■■□□□ 1.69
CACNA1A-227ENST00000636549 NEUROD1Q13562 356 aa25.56■■□□□ 1.68
CACNA1A-227ENST00000636549 ARID3CA6NKF2 412 aa25.55■■□□□ 1.68
CACNA1A-227ENST00000636549 ZBTB47Q9UFB7 747 aaPredicted RBP25.48■■□□□ 1.67
CACNA1A-227ENST00000636549 RTL5Q5HYW3 569 aaPredicted RBP25.47■■□□□ 1.67
CACNA1A-227ENST00000636549 PLEKHG5O94827 1062 aa25.45■■□□□ 1.66
CACNA1A-227ENST00000636549 A0A0G2JS52 829 aa25.4■■□□□ 1.66
CACNA1A-227ENST00000636549 LOC105371045A0A1W2PR82 267 aa25.39■■□□□ 1.65
CACNA1A-227ENST00000636549 CANXP27824 592 aaKnown RBP25.34■■□□□ 1.65
CACNA1A-227ENST00000636549 SENP3Q9H4L4 574 aaPredicted RBP25.34■■□□□ 1.65
CACNA1A-227ENST00000636549 SCAF1Q9H7N4 1312 aaKnown RBP25.3■■□□□ 1.64
CACNA1A-227ENST00000636549 HRCP23327 699 aa25.13■■□□□ 1.61
CACNA1A-227ENST00000636549 TRIM26Q12899 539 aaPredicted RBP25.12■■□□□ 1.61
CACNA1A-227ENST00000636549 PABPN1Q86U42 306 aaKnown RBP eCLIP25.08■■□□□ 1.61
CACNA1A-227ENST00000636549 NPM2Q86SE8 214 aaKnown RBP25.05■■□□□ 1.6
CACNA1A-227ENST00000636549 CHGAP10645 457 aaKnown RBP25.04■■□□□ 1.6
CACNA1A-227ENST00000636549 ZBTB7CA1YPR0 619 aa25.04■■□□□ 1.6
CACNA1A-227ENST00000636549 P3H3Q8IVL6 736 aa25■■□□□ 1.59
CACNA1A-227ENST00000636549 ZNF777Q9ULD5 760 aaPredicted RBP25■■□□□ 1.59
CACNA1A-227ENST00000636549 TULP1O00294 542 aaPredicted RBP25■■□□□ 1.59
CACNA1A-227ENST00000636549 NEFMP07197 916 aa24.97■■□□□ 1.59
CACNA1A-227ENST00000636549 ESF1Q9H501 851 aaKnown RBP24.96■■□□□ 1.59
CACNA1A-227ENST00000636549 STAG3Q9UJ98 1225 aa24.95■■□□□ 1.58
CACNA1A-227ENST00000636549 ARXQ96QS3 562 aa24.87■■□□□ 1.57
CACNA1A-227ENST00000636549 DIEXFQ68CQ4 756 aaKnown RBP24.84■■□□□ 1.57
CACNA1A-227ENST00000636549 SALL2Q9Y467 1007 aaPredicted RBP24.84■■□□□ 1.57
CACNA1A-227ENST00000636549 ANP32CO43423 234 aa24.72■■□□□ 1.55
CACNA1A-227ENST00000636549 NCBP3Q53F19 620 aaKnown RBP24.7■■□□□ 1.54
CACNA1A-227ENST00000636549 CDK11AQ9UQ88 783 aaPredicted RBP24.69■■□□□ 1.54
CACNA1A-227ENST00000636549 HSP90AA1P07900 732 aaKnown RBP24.67■■□□□ 1.54
CACNA1A-227ENST00000636549 C14orf37Q86TY3 774 aa24.65■■□□□ 1.54
CACNA1A-227ENST00000636549 EIF5BO60841 1220 aaKnown RBP24.61■■□□□ 1.53
CACNA1A-227ENST00000636549 TAOK2Q9UL54 1235 aa24.61■■□□□ 1.53
CACNA1A-227ENST00000636549 TPRNQ4KMQ1 711 aa24.59■■□□□ 1.53
CACNA1A-227ENST00000636549 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.54■■□□□ 1.52
CACNA1A-227ENST00000636549 ABCC9O60706 1549 aa24.49■■□□□ 1.51
CACNA1A-227ENST00000636549 GTF3C3Q9Y5Q9 886 aa24.46■■□□□ 1.51
CACNA1A-227ENST00000636549 CDK11BP21127 795 aaKnown RBP24.41■■□□□ 1.5
CACNA1A-227ENST00000636549 SENP3-EIF4A1A0A087X0R7 540 aa24.4■■□□□ 1.5
CACNA1A-227ENST00000636549 HAP1P54257 671 aaPredicted RBP24.38■■□□□ 1.49
CACNA1A-227ENST00000636549 ANP32BQ92688 251 aaKnown RBP24.34■■□□□ 1.49
CACNA1A-227ENST00000636549 ANP32AP39687 249 aaKnown RBP24.33■■□□□ 1.49
CACNA1A-227ENST00000636549 FAM9BQ8IZU0 186 aa24.31■■□□□ 1.48
CACNA1A-227ENST00000636549 NBR1Q14596 966 aa24.27■■□□□ 1.48
CACNA1A-227ENST00000636549 KDM2AQ9Y2K7 1162 aa24.26■■□□□ 1.47
CACNA1A-227ENST00000636549 NPM1P06748 294 aaKnown RBP eCLIP24.25■■□□□ 1.47
CACNA1A-227ENST00000636549 NPHP1O15259 732 aa24.21■■□□□ 1.47
CACNA1A-227ENST00000636549 CHIC2Q9UKJ5 165 aa24.18■■□□□ 1.46
CACNA1A-227ENST00000636549 AMER1Q5JTC6 1135 aaPredicted RBP24.16■■□□□ 1.46
CACNA1A-227ENST00000636549 LMOD2Q6P5Q4 547 aa24.15■■□□□ 1.46
CACNA1A-227ENST00000636549 ARID4BQ4LE39 1312 aaPredicted RBP24.14■■□□□ 1.46
CACNA1A-227ENST00000636549 IRX6P78412 446 aaPredicted RBP24.11■■□□□ 1.45
CACNA1A-227ENST00000636549 FKBP8Q14318 412 aa24.09■■□□□ 1.45
CACNA1A-227ENST00000636549 UPF2Q9HAU5 1272 aaKnown RBP24.08■■□□□ 1.44
CACNA1A-227ENST00000636549 PPM1GO15355 546 aaPredicted RBP24.05■■□□□ 1.44
CACNA1A-227ENST00000636549 CLSTN1O94985 981 aa24.03■■□□□ 1.44
CACNA1A-227ENST00000636549 HIRIP3Q9BW71 556 aaPredicted RBP24.02■■□□□ 1.44
CACNA1A-227ENST00000636549 PPP1R15AO75807 674 aaPredicted RBP24.01■■□□□ 1.43
CACNA1A-227ENST00000636549 HNRNPUQ00839 825 aaKnown RBP eCLIP24■■□□□ 1.43
CACNA1A-227ENST00000636549 WDR43Q15061 677 aaKnown RBP eCLIP23.95■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms