Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 PHF19-207ENST00000456291 888 ntTSL 332.5■■■□□ 2.795e-11■■□□□ 14.2
YBX3P16989 KRT8-208ENST00000547031 883 ntTSL 222.46■■□□□ 1.191e-10■■□□□ 14.2
YBX3P16989 KRT8-211ENST00000549176 770 ntTSL 214.71□□□□□ -0.051e-10■■□□□ 14.2
YBX3P16989 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.752e-9■■□□□ 14.2
YBX3P16989 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.069e-8■■□□□ 14.2
YBX3P16989 AIP-203ENST00000528641 815 ntTSL 520.25■□□□□ 0.839e-8■■□□□ 14.2
YBX3P16989 AREL1-204ENST00000481010 874 ntTSL 514.66□□□□□ -0.069e-6■■□□□ 14.2
YBX3P16989 AREL1-213ENST00000556327 910 ntTSL 413.87□□□□□ -0.199e-6■■□□□ 14.2
YBX3P16989 MVB12A-202ENST00000524382 908 ntTSL 227.28■■□□□ 1.964e-8■■□□□ 14.2
YBX3P16989 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC27.27■■□□□ 1.964e-8■■□□□ 14.2
YBX3P16989 MVB12A-213ENST00000594784 705 ntTSL 525.81■■□□□ 1.724e-8■■□□□ 14.2
YBX3P16989 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC23.33■■□□□ 1.334e-8■■□□□ 14.2
YBX3P16989 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.844e-8■■□□□ 14.2
YBX3P16989 CUL2-205ENST00000374754 4440 ntTSL 515.95■□□□□ 0.149e-6■■□□□ 14.2
YBX3P16989 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.3■□□□□ 0.049e-6■■□□□ 14.2
YBX3P16989 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.019e-6■■□□□ 14.2
YBX3P16989 CUL2-210ENST00000626172 4115 ntTSL 5 BASIC15.06■□□□□ 09e-6■■□□□ 14.2
YBX3P16989 TRAPPC8-207ENST00000580104 5014 ntTSL 213.85□□□□□ -0.199e-6■■□□□ 14.2
YBX3P16989 CUL2-203ENST00000374749 4208 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.339e-6■■□□□ 14.2
YBX3P16989 CUL2-202ENST00000374748 4312 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.419e-6■■□□□ 14.2
YBX3P16989 TRAPPC8-211ENST00000582539 4391 ntTSL 1 (best) BASIC10.63□□□□□ -0.719e-6■■□□□ 14.2
YBX3P16989 CUL2-204ENST00000374751 4233 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.739e-6■■□□□ 14.2
YBX3P16989 TRAPPC8-205ENST00000578658 563 ntTSL 56.46□□□□□ -1.389e-6■■□□□ 14.2
YBX3P16989 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC5.4□□□□□ -1.549e-6■■□□□ 14.2
YBX3P16989 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC5.29□□□□□ -1.569e-6■■□□□ 14.2
YBX3P16989 ACTN1-211ENST00000553882 2636 ntTSL 214.85□□□□□ -0.033e-6■■□□□ 14.2
YBX3P16989 CRCP-205ENST00000431089 942 ntTSL 2 BASIC22.78■■□□□ 1.245e-6■■□□□ 14.2
YBX3P16989 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC19.95■□□□□ 0.785e-6■■□□□ 14.2
YBX3P16989 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.065e-6■■□□□ 14.2
YBX3P16989 CRCP-202ENST00000360415 3139 ntTSL 1 (best)14.24□□□□□ -0.135e-6■■□□□ 14.2
YBX3P16989 NNT-206ENST00000506893 367 ntTSL 36.97□□□□□ -1.291e-6■■□□□ 14.2
YBX3P16989 NNT-204ENST00000503651 682 ntTSL 36.27□□□□□ -1.411e-6■■□□□ 14.2
YBX3P16989 USP48-208ENST00000479177 686 ntTSL 37.92□□□□□ -1.143e-16■■□□□ 14.2
YBX3P16989 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.374e-6■■□□□ 14.2
YBX3P16989 JAG1-202ENST00000423891 3758 ntTSL 27.93□□□□□ -1.144e-6■■□□□ 14.2
YBX3P16989 UBE3C-207ENST00000494532 543 ntTSL 216.99■□□□□ 0.312e-6■■□□□ 14.2
YBX3P16989 SPN-205ENST00000563039 1853 ntTSL 523.19■■□□□ 1.32e-7■■□□□ 14.2
YBX3P16989 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.022e-7■■□□□ 14.2
YBX3P16989 NDUFA4-203ENST00000470761 502 ntTSL 417.36■□□□□ 0.372e-7■■□□□ 14.2
YBX3P16989 PTP4A2-206ENST00000489313 1551 ntTSL 215.19■□□□□ 0.023e-10■■□□□ 14.2
YBX3P16989 PTP4A2-201ENST00000457805 1032 ntTSL 2 BASIC11□□□□□ -0.653e-10■■□□□ 14.2
YBX3P16989 PTP4A2-217ENST00000602683 667 ntTSL 29.92□□□□□ -0.823e-10■■□□□ 14.2
YBX3P16989 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.53□□□□□ -1.683e-10■■□□□ 14.2
YBX3P16989 FADS1-208ENST00000473263 574 ntTSL 427.6■■■□□ 2.016e-13■■□□□ 14.2
YBX3P16989 GRINA-204ENST00000527194 806 ntTSL 219.21■□□□□ 0.676e-11■■□□□ 14.2
YBX3P16989 COTL1-205ENST00000567278 5330 ntTSL 211.71□□□□□ -0.531e-11■■□□□ 14.2
YBX3P16989 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.591e-6■■□□□ 14.2
YBX3P16989 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC30.46■■■□□ 2.471e-9■■□□□ 14.2
YBX3P16989 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.221e-9■■□□□ 14.2
YBX3P16989 GTF3A-204ENST00000438571 792 ntTSL 524.98■■□□□ 1.591e-8■■□□□ 14.2
YBX3P16989 ATP5G3-204ENST00000472782 686 ntTSL 219.6■□□□□ 0.737e-49■■□□□ 14.2
YBX3P16989 C9orf16-203ENST00000489240 573 ntTSL 321.98■■□□□ 1.117e-12■■□□□ 14.2
YBX3P16989 PHF19-212ENST00000478371 506 ntTSL 417.14■□□□□ 0.333e-10■■□□□ 14.2
YBX3P16989 PHF19-211ENST00000474402 578 ntTSL 415.12■□□□□ 0.013e-10■■□□□ 14.2
YBX3P16989 PHF19-205ENST00000439674 556 ntTSL 414.12□□□□□ -0.153e-10■■□□□ 14.2
YBX3P16989 PHF19-206ENST00000453868 565 ntTSL 513.29□□□□□ -0.283e-10■■□□□ 14.2
YBX3P16989 NDFIP2-202ENST00000465762 698 ntTSL 316.25■□□□□ 0.191e-6■■□□□ 14.2
YBX3P16989 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.031e-6■■□□□ 14.2
YBX3P16989 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.051e-6■■□□□ 14.2
YBX3P16989 NDFIP2-206ENST00000620924 2324 ntTSL 1 (best) BASIC11.2□□□□□ -0.621e-6■■□□□ 14.2
YBX3P16989 NDFIP2-203ENST00000487865 1384 ntTSL 2 BASIC10.41□□□□□ -0.741e-6■■□□□ 14.2
YBX3P16989 GAS5-216ENST00000443799 897 ntTSL 512.61□□□□□ -0.392e-39■■□□□ 14.2
YBX3P16989 GAS5-211ENST00000432536 959 ntTSL 2 BASIC10.17□□□□□ -0.782e-39■■□□□ 14.2
YBX3P16989 GAS5-227ENST00000456293 583 ntTSL 39.28□□□□□ -0.922e-39■■□□□ 14.2
YBX3P16989 DNM2-215ENST00000590806 5651 ntTSL 214.86□□□□□ -0.033e-11■■□□□ 14.2
YBX3P16989 DNM2-221ENST00000593203 2507 ntTSL 214.3□□□□□ -0.123e-11■■□□□ 14.2
YBX3P16989 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.363e-13■■□□□ 14.2
YBX3P16989 STXBP5-204ENST00000367481 9177 ntAPPRIS P3 TSL 1 (best) BASIC9.03□□□□□ -0.964e-7■■□□□ 14.2
YBX3P16989 STXBP5-201ENST00000321680 3456 ntAPPRIS ALT1 TSL 5 BASIC7.51□□□□□ -1.214e-7■■□□□ 14.2
YBX3P16989 STXBP5-203ENST00000367480 3297 ntTSL 5 BASIC7.51□□□□□ -1.214e-7■■□□□ 14.2
YBX3P16989 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC28.46■■■□□ 2.152e-6■■□□□ 14.2
YBX3P16989 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.772e-6■■□□□ 14.2
YBX3P16989 SEC11A-202ENST00000455959 1223 ntTSL 1 (best) BASIC11.17□□□□□ -0.622e-6■■□□□ 14.2
YBX3P16989 LONRF3-204ENST00000439603 1873 ntTSL 1 (best)28■■■□□ 2.073e-6■■□□□ 14.2
YBX3P16989 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.773e-6■■□□□ 14.2
YBX3P16989 LONRF3-206ENST00000481285 2895 ntTSL 218.18■□□□□ 0.53e-6■■□□□ 14.2
YBX3P16989 LONRF3-205ENST00000472173 2685 ntTSL 518■□□□□ 0.473e-6■■□□□ 14.2
YBX3P16989 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC17.13■□□□□ 0.333e-6■■□□□ 14.2
YBX3P16989 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.48■□□□□ 0.233e-6■■□□□ 14.2
YBX3P16989 OSBP-202ENST00000525357 991 ntTSL 1 (best)7.32□□□□□ -1.242e-8■■□□□ 14.2
YBX3P16989 NEMP1-202ENST00000379391 5370 ntTSL 1 (best) BASIC9.46□□□□□ -0.98e-9■■□□□ 14.2
YBX3P16989 NEMP1-201ENST00000300128 5590 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.118e-9■■□□□ 14.2
YBX3P16989 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.048e-8■■□□□ 14.2
YBX3P16989 COG4-212ENST00000564653 590 ntTSL 5 BASIC20.56■□□□□ 0.883e-6■■□□□ 14.2
YBX3P16989 COG4-208ENST00000534772 647 ntTSL 39.07□□□□□ -0.963e-6■■□□□ 14.2
YBX3P16989 ZNF146-202ENST00000456324 3780 ntAPPRIS P1 TSL 2 BASIC9.33□□□□□ -0.926e-8■■□□□ 14.2
YBX3P16989 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.296e-8■■□□□ 14.2
YBX3P16989 MIEF1-201ENST00000325301 5625 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.382e-7■■□□□ 14.2
YBX3P16989 EHMT2-205ENST00000436026 894 ntTSL 515.66■□□□□ 0.11e-6■■□□□ 14.2
YBX3P16989 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC26.38■■□□□ 1.812e-6■■□□□ 14.2
YBX3P16989 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC25.59■■□□□ 1.692e-6■■□□□ 14.2
YBX3P16989 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.612e-6■■□□□ 14.2
YBX3P16989 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.612e-6■■□□□ 14.2
YBX3P16989 TBC1D7-208ENST00000421203 1544 ntTSL 224.48■■□□□ 1.512e-6■■□□□ 14.2
YBX3P16989 TBC1D7-214ENST00000606214 2229 ntAPPRIS P1 TSL 512.06□□□□□ -0.482e-6■■□□□ 14.2
YBX3P16989 ACVR2B-201ENST00000352511 11821 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.662e-7■■□□□ 14.2
YBX3P16989 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.332e-9■■□□□ 14.2
YBX3P16989 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC26.69■■□□□ 1.862e-9■■□□□ 14.2
YBX3P16989 RPL13-203ENST00000399461 879 ntTSL 229.2■■■□□ 2.263e-64■■□□□ 14.2
YBX3P16989 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.383e-64■■□□□ 14.2
Retrieved 100 of 29,075 protein–RNA pairs in 812.7 ms