RNA–Protein interactions for RNA: ENST00000489313.1

PTP4A2-206, Transcript of protein tyrosine phosphatase type IVA, member 2, humanhuman

TSL 2

Gene PTP4A2, Length 1,551 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A2-206ENST00000489313 NISCHQ9Y2I1 1504 aa27.39■■□□□ 1.98
PTP4A2-206ENST00000489313 AEBP2Q6ZN18 517 aaPredicted RBP25.34■■□□□ 1.65
PTP4A2-206ENST00000489313 ABCC9O60706 1549 aa24.89■■□□□ 1.58
PTP4A2-206ENST00000489313 CCDC180Q9P1Z9 1646 aa24.66■■□□□ 1.54
PTP4A2-206ENST00000489313 RB1CC1Q8TDY2 1594 aa23.57■■□□□ 1.36
PTP4A2-206ENST00000489313 CHIC1Q5VXU3 224 aa23.57■■□□□ 1.36
PTP4A2-206ENST00000489313 DNAJC5BQ9UF47 199 aa23.53■■□□□ 1.36
PTP4A2-206ENST00000489313 NACADO15069 1562 aa23.34■■□□□ 1.33
PTP4A2-206ENST00000489313 DCAF8L2P0C7V8 631 aa23.25■■□□□ 1.31
PTP4A2-206ENST00000489313 PABPN1Q86U42 306 aaKnown RBP eCLIP23.15■■□□□ 1.3
PTP4A2-206ENST00000489313 UNC13AQ9UPW8 1703 aa23.1■■□□□ 1.29
PTP4A2-206ENST00000489313 MYO15BQ96JP2 1530 aa22.92■■□□□ 1.26
PTP4A2-206ENST00000489313 BICRAQ9NZM4 1560 aa22.92■■□□□ 1.26
PTP4A2-206ENST00000489313 ZCCHC6Q5VYS8 1495 aaKnown RBP22.65■■□□□ 1.22
PTP4A2-206ENST00000489313 DCAF1Q9Y4B6 1507 aa22.57■■□□□ 1.2
PTP4A2-206ENST00000489313 SHROOM4Q9ULL8 1493 aa22.51■■□□□ 1.19
PTP4A2-206ENST00000489313 SCRIBQ14160 1630 aa22.5■■□□□ 1.19
PTP4A2-206ENST00000489313 CC2D2AQ9P2K1 1620 aa22.47■■□□□ 1.19
PTP4A2-206ENST00000489313 CECR2Q9BXF3 1484 aa22.42■■□□□ 1.18
PTP4A2-206ENST00000489313 EIF4G1Q04637 1599 aaKnown RBP22.36■■□□□ 1.17
PTP4A2-206ENST00000489313 POTEDQ86YR6 584 aa22.29■■□□□ 1.16
PTP4A2-206ENST00000489313 SENP3Q9H4L4 574 aaPredicted RBP21.82■■□□□ 1.08
PTP4A2-206ENST00000489313 DNAJC5Q9H3Z4 198 aa21.71■■□□□ 1.07
PTP4A2-206ENST00000489313 NCAPD3P42695 1498 aa21.55■■□□□ 1.04
PTP4A2-206ENST00000489313 ERCC6Q03468 1493 aa21.49■■□□□ 1.03
PTP4A2-206ENST00000489313 CUX2O14529 1486 aa21.48■■□□□ 1.03
PTP4A2-206ENST00000489313 ATAD2BQ9ULI0 1458 aa21.48■■□□□ 1.03
PTP4A2-206ENST00000489313 SMARCA4P51532 1647 aa21.42■■□□□ 1.02
PTP4A2-206ENST00000489313 SMARCA2P51531 1590 aa21.4■■□□□ 1.02
PTP4A2-206ENST00000489313 HMGXB3Q12766 1538 aa21.38■■□□□ 1.01
PTP4A2-206ENST00000489313 NESP48681 1621 aa21.34■■□□□ 1.01
PTP4A2-206ENST00000489313 PHF23Q9BUL5 403 aaPredicted RBP21.32■■□□□ 1
PTP4A2-206ENST00000489313 BAZ1BQ9UIG0 1483 aaKnown RBP21.27■□□□□ 0.99
PTP4A2-206ENST00000489313 BAZ1AQ9NRL2 1556 aaPredicted RBP21.27■□□□□ 0.99
PTP4A2-206ENST00000489313 PEG3Q9GZU2 1588 aa21.19■□□□□ 0.98
PTP4A2-206ENST00000489313 THOC2Q8NI27 1593 aaKnown RBP21.14■□□□□ 0.97
PTP4A2-206ENST00000489313 MROH2BQ7Z745 1585 aa21.13■□□□□ 0.97
PTP4A2-206ENST00000489313 LAMC3Q9Y6N6 1575 aa21.11■□□□□ 0.97
PTP4A2-206ENST00000489313 KIF21AQ7Z4S6 1674 aa21.07■□□□□ 0.96
PTP4A2-206ENST00000489313 PDS5BQ9NTI5 1447 aa20.98■□□□□ 0.95
PTP4A2-206ENST00000489313 CADPSQ9ULU8 1353 aa20.9■□□□□ 0.94
PTP4A2-206ENST00000489313 WIZO95785 1651 aa20.88■□□□□ 0.93
PTP4A2-206ENST00000489313 MRC2Q9UBG0 1479 aa20.83■□□□□ 0.93
PTP4A2-206ENST00000489313 WDR62O43379 1518 aa20.79■□□□□ 0.92
PTP4A2-206ENST00000489313 TRIM41Q8WV44 630 aa20.73■□□□□ 0.91
PTP4A2-206ENST00000489313 CEP164Q9UPV0 1460 aa20.72■□□□□ 0.91
PTP4A2-206ENST00000489313 FANCD2Q9BXW9 1451 aa20.68■□□□□ 0.9
PTP4A2-206ENST00000489313 CFTRP13569 1480 aa20.61■□□□□ 0.89
PTP4A2-206ENST00000489313 RSF1Q96T23 1441 aaPredicted RBP20.6■□□□□ 0.89
PTP4A2-206ENST00000489313 FOXD1Q16676 465 aa20.58■□□□□ 0.88
PTP4A2-206ENST00000489313 TOP2AP11388 1531 aaKnown RBP20.57■□□□□ 0.88
PTP4A2-206ENST00000489313 URB2Q14146 1524 aaKnown RBP20.53■□□□□ 0.88
PTP4A2-206ENST00000489313 OSCARQ8IYS5 282 aa20.48■□□□□ 0.87
PTP4A2-206ENST00000489313 PRDM2Q13029 1718 aa20.43■□□□□ 0.86
PTP4A2-206ENST00000489313 CCDC88BA6NC98 1476 aa20.34■□□□□ 0.85
PTP4A2-206ENST00000489313 ZNF608Q9ULD9 1512 aaPredicted RBP20.32■□□□□ 0.84
PTP4A2-206ENST00000489313 IFT140Q96RY7 1462 aa20.29■□□□□ 0.84
PTP4A2-206ENST00000489313 RIMBP3CA6NJZ7 1639 aa20.28■□□□□ 0.84
PTP4A2-206ENST00000489313 RIMBP3BA6NNM3 1639 aa20.28■□□□□ 0.84
PTP4A2-206ENST00000489313 RIMBP3Q9UFD9 1639 aa20.28■□□□□ 0.84
PTP4A2-206ENST00000489313 TOPBP1Q92547 1522 aa20.27■□□□□ 0.84
PTP4A2-206ENST00000489313 EIF4G3O43432 1585 aaKnown RBP20.2■□□□□ 0.82
PTP4A2-206ENST00000489313 ARHGEF11O15085 1522 aa20.18■□□□□ 0.82
PTP4A2-206ENST00000489313 ABCC8Q09428 1581 aa20.17■□□□□ 0.82
PTP4A2-206ENST00000489313 DNMBPQ6XZF7 1577 aa20.17■□□□□ 0.82
PTP4A2-206ENST00000489313 TARBP1Q13395 1621 aaKnown RBP20.12■□□□□ 0.81
PTP4A2-206ENST00000489313 AQRO60306 1485 aaKnown RBP eCLIP20.11■□□□□ 0.816e-6■■■■□ 23.2
PTP4A2-206ENST00000489313 CHD1O14646 1710 aa20.1■□□□□ 0.81
PTP4A2-206ENST00000489313 CYB5RLQ6IPT4 315 aa20.05■□□□□ 0.8
PTP4A2-206ENST00000489313 POLA1P09884 1462 aaPredicted RBP20.05■□□□□ 0.8
PTP4A2-206ENST00000489313 FBLN2P98095 1184 aa20.03■□□□□ 0.8
PTP4A2-206ENST00000489313 RAD54L2Q9Y4B4 1467 aa20■□□□□ 0.79
PTP4A2-206ENST00000489313 ARAP1Q96P48 1450 aa19.97■□□□□ 0.79
PTP4A2-206ENST00000489313 TDRD9Q8NDG6 1382 aaKnown RBP19.95■□□□□ 0.78
PTP4A2-206ENST00000489313 SOGA1O94964 1423 aa19.95■□□□□ 0.78
PTP4A2-206ENST00000489313 FGD5Q6ZNL6 1462 aa19.9■□□□□ 0.78
PTP4A2-206ENST00000489313 SNAPC4Q5SXM2 1469 aa19.89■□□□□ 0.78
PTP4A2-206ENST00000489313 TRHP20396 242 aaPredicted RBP19.89■□□□□ 0.77
PTP4A2-206ENST00000489313 CUX1P39880 1505 aa19.86■□□□□ 0.77
PTP4A2-206ENST00000489313 MSH5O43196 834 aa19.85■□□□□ 0.77
PTP4A2-206ENST00000489313 WDR97A6NE52 1622 aa19.84■□□□□ 0.77
PTP4A2-206ENST00000489313 CLASP1Q7Z460 1538 aa19.84■□□□□ 0.77
PTP4A2-206ENST00000489313 CHMP7Q8WUX9 453 aaPredicted RBP19.82■□□□□ 0.76
PTP4A2-206ENST00000489313 MAGI1Q96QZ7 1491 aaPredicted RBP19.8■□□□□ 0.76
PTP4A2-206ENST00000489313 SYNJ1O43426 1573 aa19.79■□□□□ 0.76
PTP4A2-206ENST00000489313 GRIN2BQ13224 1484 aa19.79■□□□□ 0.76
PTP4A2-206ENST00000489313 SYNJ2O15056 1496 aa19.75■□□□□ 0.75
PTP4A2-206ENST00000489313 PBRM1Q86U86 1689 aa19.74■□□□□ 0.75
PTP4A2-206ENST00000489313 GAPVD1Q14C86 1478 aa19.71■□□□□ 0.75
PTP4A2-206ENST00000489313 ABCA5Q8WWZ7 1642 aa19.65■□□□□ 0.74
PTP4A2-206ENST00000489313 ABCA10Q8WWZ4 1543 aa19.64■□□□□ 0.73
PTP4A2-206ENST00000489313 SUPT5HO00267 1087 aaKnown RBP19.58■□□□□ 0.73
PTP4A2-206ENST00000489313 GRIN2AQ12879 1464 aa19.55■□□□□ 0.72
PTP4A2-206ENST00000489313 ERCC6L2Q5T890 1561 aa19.55■□□□□ 0.72
PTP4A2-206ENST00000489313 ADAMTS12P58397 1594 aa19.52■□□□□ 0.72
PTP4A2-206ENST00000489313 WRNQ14191 1432 aaPredicted RBP eCLIP19.52■□□□□ 0.72
PTP4A2-206ENST00000489313 CEP170Q5SW79 1584 aa19.5■□□□□ 0.71
PTP4A2-206ENST00000489313 BIVM-ERCC5R4GMW8 1640 aa19.48■□□□□ 0.71
PTP4A2-206ENST00000489313 NUP160Q12769 1436 aa19.48■□□□□ 0.71
PTP4A2-206ENST00000489313 TOP2BQ02880 1626 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms