RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 AEBP2Q6ZN18 517 aaPredicted RBP25.6■■□□□ 1.69
USP48-208ENST00000479177 CHIC1Q5VXU3 224 aa23.86■■□□□ 1.41
USP48-208ENST00000479177 SENP3Q9H4L4 574 aaPredicted RBP21.73■■□□□ 1.07
USP48-208ENST00000479177 PHF23Q9BUL5 403 aaPredicted RBP21.49■■□□□ 1.03
USP48-208ENST00000479177 FOXD1Q16676 465 aa20.42■□□□□ 0.86
USP48-208ENST00000479177 POTEDQ86YR6 584 aa19.39■□□□□ 0.69
USP48-208ENST00000479177 MSH5O43196 834 aa19.1■□□□□ 0.65
USP48-208ENST00000479177 PIAS4Q8N2W9 510 aaPredicted RBP18.93■□□□□ 0.62
USP48-208ENST00000479177 PPP6R1Q9UPN7 881 aa18.88■□□□□ 0.61
USP48-208ENST00000479177 PLPPR3Q6T4P5 718 aa18.84■□□□□ 0.61
USP48-208ENST00000479177 ADRA2BP18089 450 aa18.78■□□□□ 0.6
USP48-208ENST00000479177 MAPK8IP2Q13387 824 aaPredicted RBP17.39■□□□□ 0.37
USP48-208ENST00000479177 DMRT2Q9Y5R5 561 aa17.22■□□□□ 0.35
USP48-208ENST00000479177 SCAF1Q9H7N4 1312 aaKnown RBP16.98■□□□□ 0.31
USP48-208ENST00000479177 CACNB1Q02641 598 aaPredicted RBP16.68■□□□□ 0.26
USP48-208ENST00000479177 DCAF8L1A6NGE4 600 aa16.55■□□□□ 0.24
USP48-208ENST00000479177 PPP4R3CPQ6ZMV5 832 aa16.53■□□□□ 0.24
USP48-208ENST00000479177 HOXD11P31277 338 aaPredicted RBP16.44■□□□□ 0.22
USP48-208ENST00000479177 RNF39Q9H2S5 420 aa16.35■□□□□ 0.21
USP48-208ENST00000479177 CNKSR2Q8WXI2 1034 aa16.25■□□□□ 0.19
USP48-208ENST00000479177 RNF216Q9NWF9 866 aaPredicted RBP16.19■□□□□ 0.18
USP48-208ENST00000479177 C1QBPQ07021 282 aaKnown RBP16.02■□□□□ 0.16
USP48-208ENST00000479177 DNAJC5BQ9UF47 199 aa15.84■□□□□ 0.13
USP48-208ENST00000479177 NCBP3Q53F19 620 aaKnown RBP15.67■□□□□ 0.1
USP48-208ENST00000479177 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.65■□□□□ 0.1
USP48-208ENST00000479177 NPM3O75607 178 aaKnown RBP15.58■□□□□ 0.08
USP48-208ENST00000479177 NISCHQ9Y2I1 1504 aa15.53■□□□□ 0.08
USP48-208ENST00000479177 KCNA4P22459 653 aa15.34■□□□□ 0.05
USP48-208ENST00000479177 U3KPZ7 1027 aaPredicted RBP15.34■□□□□ 0.05
USP48-208ENST00000479177 SPINK5Q9NQ38 1064 aaPredicted RBP15.27■□□□□ 0.04
USP48-208ENST00000479177 DSG3P32926 999 aa15.21■□□□□ 0.03
USP48-208ENST00000479177 CAPN15O75808 1086 aa15.18■□□□□ 0.02
USP48-208ENST00000479177 POTEHQ6S545 545 aa15.09■□□□□ 0.01
USP48-208ENST00000479177 SLC4A2P04920 1241 aa15.01□□□□□ -0.01
USP48-208ENST00000479177 TRHP20396 242 aaPredicted RBP14.87□□□□□ -0.03
USP48-208ENST00000479177 ABCB7O75027 752 aa14.86□□□□□ -0.03
USP48-208ENST00000479177 ZNF219Q9P2Y4 722 aaPredicted RBP14.73□□□□□ -0.05
USP48-208ENST00000479177 APLP2Q06481 763 aa14.67□□□□□ -0.06
USP48-208ENST00000479177 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.6□□□□□ -0.07
USP48-208ENST00000479177 HNRNPUL2Q1KMD3 747 aaKnown RBP14.6□□□□□ -0.07
USP48-208ENST00000479177 SAMD1Q6SPF0 538 aaPredicted RBP14.55□□□□□ -0.08
USP48-208ENST00000479177 SLC4A1APQ9BWU0 796 aaKnown RBP14.52□□□□□ -0.09
USP48-208ENST00000479177 POLA2Q14181 598 aa14.4□□□□□ -0.1
USP48-208ENST00000479177 RBM42Q9BTD8 480 aaKnown RBP14.39□□□□□ -0.11
USP48-208ENST00000479177 MYCNP04198 464 aaPredicted RBP14.34□□□□□ -0.11
USP48-208ENST00000479177 CHRDL2Q6WN34 429 aa14.31□□□□□ -0.12
USP48-208ENST00000479177 ATF5Q9Y2D1 282 aaPredicted RBP14.2□□□□□ -0.14
USP48-208ENST00000479177 ZBTB22O15209 634 aa14.16□□□□□ -0.14
USP48-208ENST00000479177 EHMT2Q96KQ7 1210 aa14.07□□□□□ -0.16
USP48-208ENST00000479177 FOXD4L1Q9NU39 408 aa14.05□□□□□ -0.16
USP48-208ENST00000479177 AKT1S1Q96B36 256 aa14.03□□□□□ -0.16
USP48-208ENST00000479177 REM2Q8IYK8 340 aaPredicted RBP13.97□□□□□ -0.17
USP48-208ENST00000479177 SP7Q8TDD2 431 aaPredicted RBP13.96□□□□□ -0.17
USP48-208ENST00000479177 OSCARQ8IYS5 282 aa13.95□□□□□ -0.18
USP48-208ENST00000479177 CSRNP3Q8WYN3 585 aa13.94□□□□□ -0.18
USP48-208ENST00000479177 PIP4P2Q8N4L2 257 aa13.93□□□□□ -0.18
USP48-208ENST00000479177 ZBTB12Q9Y330 459 aaPredicted RBP13.92□□□□□ -0.18
USP48-208ENST00000479177 PITPNM1O00562 1244 aa13.83□□□□□ -0.2
USP48-208ENST00000479177 FXR2P51116 673 aaKnown RBP eCLIP13.77□□□□□ -0.21
USP48-208ENST00000479177 HAX1O00165 279 aa13.75□□□□□ -0.21
USP48-208ENST00000479177 CCDC180Q9P1Z9 1646 aa13.68□□□□□ -0.22
USP48-208ENST00000479177 EVX2Q03828 476 aa13.68□□□□□ -0.22
USP48-208ENST00000479177 ATXN8OSP0DMR3 200 aa13.57□□□□□ -0.24
USP48-208ENST00000479177 SPDYE2BA6NHP3 402 aa13.53□□□□□ -0.24
USP48-208ENST00000479177 SPDYE6P0CI01 402 aa13.53□□□□□ -0.24
USP48-208ENST00000479177 SPDYE2Q495Y8 402 aa13.53□□□□□ -0.24
USP48-208ENST00000479177 MKRN4PQ13434 485 aaPredicted RBP13.5□□□□□ -0.25
USP48-208ENST00000479177 FBLN2P98095 1184 aa13.47□□□□□ -0.25
USP48-208ENST00000479177 PRKAR2AP13861 404 aaKnown RBP13.46□□□□□ -0.25
USP48-208ENST00000479177 CLEC11AQ9Y240 323 aa13.45□□□□□ -0.26
USP48-208ENST00000479177 SPDYE1Q8NFV5 336 aaPredicted RBP13.37□□□□□ -0.27
USP48-208ENST00000479177 ZNF692Q9BU19 519 aaPredicted RBP13.36□□□□□ -0.27
USP48-208ENST00000479177 SSUH2Q9Y2M2 353 aa13.35□□□□□ -0.27
USP48-208ENST00000479177 C19orf67A6NJJ6 358 aa13.34□□□□□ -0.27
USP48-208ENST00000479177 CHADLQ6NUI6 762 aa13.29□□□□□ -0.28
USP48-208ENST00000479177 GABBR2O75899 941 aa13.25□□□□□ -0.29
USP48-208ENST00000479177 PABPN1Q86U42 306 aaKnown RBP eCLIP13.17□□□□□ -0.3
USP48-208ENST00000479177 PRR29P0C7W0 189 aa13.14□□□□□ -0.31
USP48-208ENST00000479177 LHX8Q68G74 356 aa13.1□□□□□ -0.31
USP48-208ENST00000479177 ZCCHC6Q5VYS8 1495 aaKnown RBP13.04□□□□□ -0.32
USP48-208ENST00000479177 POTEIP0CG38 1075 aa13.04□□□□□ -0.32
USP48-208ENST00000479177 ABCC9O60706 1549 aa13□□□□□ -0.33
USP48-208ENST00000479177 CD44P16070 742 aaKnown RBP13□□□□□ -0.33
USP48-208ENST00000479177 FARP1Q9Y4F1 1045 aaPredicted RBP12.98□□□□□ -0.33
USP48-208ENST00000479177 DCAF1Q9Y4B6 1507 aa12.88□□□□□ -0.35
USP48-208ENST00000479177 MYO15BQ96JP2 1530 aa12.8□□□□□ -0.36
USP48-208ENST00000479177 CREBZFQ9NS37 354 aa12.79□□□□□ -0.36
USP48-208ENST00000479177 ZRANB1Q9UGI0 708 aa12.76□□□□□ -0.37
USP48-208ENST00000479177 NACADO15069 1562 aa12.75□□□□□ -0.37
USP48-208ENST00000479177 ZNF579Q8NAF0 562 aaKnown RBP12.75□□□□□ -0.37
USP48-208ENST00000479177 DCBLD2Q96PD2 775 aa12.75□□□□□ -0.37
USP48-208ENST00000479177 CLCN6P51797 869 aa12.74□□□□□ -0.37
USP48-208ENST00000479177 DCAF8L2P0C7V8 631 aa12.71□□□□□ -0.37
USP48-208ENST00000479177 GALR2O43603 387 aaPredicted RBP12.7□□□□□ -0.38
USP48-208ENST00000479177 RB1CC1Q8TDY2 1594 aa12.68□□□□□ -0.38
USP48-208ENST00000479177 SPDYE4A6NLX3 237 aa12.63□□□□□ -0.39
USP48-208ENST00000479177 POTEB2H3BUK9 544 aa12.62□□□□□ -0.39
USP48-208ENST00000479177 STAG3Q9UJ98 1225 aa12.62□□□□□ -0.39
USP48-208ENST00000479177 PHF12Q96QT6 1004 aa12.6□□□□□ -0.39
USP48-208ENST00000479177 OTUD5Q96G74 571 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 285 ms