RNA–Protein interactions for RNA: ENST00000422289.3

LONRF3-203, Transcript of LON peptidase N-terminal domain and ring finger 3, humanhuman

TSL 2 BASIC

Gene LONRF3, Length 2,898 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LONRF3-203ENST00000422289 NISCHQ9Y2I1 1504 aa33.21■■■□□ 2.91
LONRF3-203ENST00000422289 SHROOM4Q9ULL8 1493 aa28.84■■■□□ 2.21
LONRF3-203ENST00000422289 SUPT5HO00267 1087 aaKnown RBP28.29■■■□□ 2.12
LONRF3-203ENST00000422289 DCAF8L2P0C7V8 631 aa28.09■■■□□ 2.09
LONRF3-203ENST00000422289 ZCCHC6Q5VYS8 1495 aaKnown RBP28.06■■■□□ 2.08
LONRF3-203ENST00000422289 CCDC180Q9P1Z9 1646 aa28■■■□□ 2.07
LONRF3-203ENST00000422289 CHIC1Q5VXU3 224 aa27.31■■□□□ 1.96
LONRF3-203ENST00000422289 MYO15BQ96JP2 1530 aa27.23■■□□□ 1.95
LONRF3-203ENST00000422289 DCAF1Q9Y4B6 1507 aa27.01■■□□□ 1.91
LONRF3-203ENST00000422289 LOC105371045A0A1W2PR82 267 aa26.7■■□□□ 1.87
LONRF3-203ENST00000422289 PCGF6Q9BYE7 350 aa26.68■■□□□ 1.86
LONRF3-203ENST00000422289 SCRIBQ14160 1630 aa26.62■■□□□ 1.85
LONRF3-203ENST00000422289 HRCP23327 699 aa26.5■■□□□ 1.83
LONRF3-203ENST00000422289 ABCC9O60706 1549 aa26.47■■□□□ 1.83
LONRF3-203ENST00000422289 RSF1Q96T23 1441 aaPredicted RBP26.39■■□□□ 1.82
LONRF3-203ENST00000422289 PPARGC1BQ86YN6 1023 aaKnown RBP26.23■■□□□ 1.79
LONRF3-203ENST00000422289 FAM9AQ8IZU1 332 aaPredicted RBP26.22■■□□□ 1.79
LONRF3-203ENST00000422289 TRIM41Q8WV44 630 aa26.19■■□□□ 1.78
LONRF3-203ENST00000422289 EHMT2Q96KQ7 1210 aa26.19■■□□□ 1.78
LONRF3-203ENST00000422289 RB1CC1Q8TDY2 1594 aa26.16■■□□□ 1.78
LONRF3-203ENST00000422289 CECR2Q9BXF3 1484 aa26.09■■□□□ 1.77
LONRF3-203ENST00000422289 NACADO15069 1562 aa25.97■■□□□ 1.75
LONRF3-203ENST00000422289 TRIM26Q12899 539 aaPredicted RBP25.94■■□□□ 1.74
LONRF3-203ENST00000422289 MROH2BQ7Z745 1585 aa25.94■■□□□ 1.74
LONRF3-203ENST00000422289 WIZO95785 1651 aa25.8■■□□□ 1.72
LONRF3-203ENST00000422289 BAZ1AQ9NRL2 1556 aaPredicted RBP25.48■■□□□ 1.67
LONRF3-203ENST00000422289 PABPN1Q86U42 306 aaKnown RBP eCLIP25.39■■□□□ 1.66
LONRF3-203ENST00000422289 ABCC8Q09428 1581 aa25.34■■□□□ 1.65
LONRF3-203ENST00000422289 TTBK1Q5TCY1 1321 aaPredicted RBP25.31■■□□□ 1.64
LONRF3-203ENST00000422289 CCDC88BA6NC98 1476 aa25.29■■□□□ 1.64
LONRF3-203ENST00000422289 SMARCA4P51532 1647 aa25.28■■□□□ 1.64
LONRF3-203ENST00000422289 EIF4G1Q04637 1599 aaKnown RBP25.27■■□□□ 1.64
LONRF3-203ENST00000422289 TOP2AP11388 1531 aaKnown RBP25.25■■□□□ 1.63
LONRF3-203ENST00000422289 ZEB1P37275 1124 aaPredicted RBP25.25■■□□□ 1.63
LONRF3-203ENST00000422289 UNC13AQ9UPW8 1703 aa25.25■■□□□ 1.63
LONRF3-203ENST00000422289 SMARCA2P51531 1590 aa25.17■■□□□ 1.62
LONRF3-203ENST00000422289 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.13■■□□□ 1.61
LONRF3-203ENST00000422289 SOGA1O94964 1423 aa25.13■■□□□ 1.61
LONRF3-203ENST00000422289 RUSC2Q8N2Y8 1516 aa25.02■■□□□ 1.6
LONRF3-203ENST00000422289 UBTFP17480 764 aaKnown RBP25.01■■□□□ 1.59
LONRF3-203ENST00000422289 CCER1Q8TC90 406 aaPredicted RBP24.99■■□□□ 1.59
LONRF3-203ENST00000422289 BICRAQ9NZM4 1560 aa24.96■■□□□ 1.59
LONRF3-203ENST00000422289 CEP162Q5TB80 1403 aa24.95■■□□□ 1.58
LONRF3-203ENST00000422289 CSRNP3Q8WYN3 585 aa24.94■■□□□ 1.58
LONRF3-203ENST00000422289 PELP1Q8IZL8 1130 aaKnown RBP24.83■■□□□ 1.56
LONRF3-203ENST00000422289 TNIKQ9UKE5 1360 aa24.81■■□□□ 1.56
LONRF3-203ENST00000422289 WRNQ14191 1432 aaPredicted RBP eCLIP24.8■■□□□ 1.56
LONRF3-203ENST00000422289 RANGAP1P46060 587 aaPredicted RBP24.77■■□□□ 1.56
LONRF3-203ENST00000422289 EEA1Q15075 1411 aa24.69■■□□□ 1.54
LONRF3-203ENST00000422289 ATAD2BQ9ULI0 1458 aa24.68■■□□□ 1.54
LONRF3-203ENST00000422289 GOLGA3Q08378 1498 aa24.67■■□□□ 1.54
LONRF3-203ENST00000422289 SYNJ1O43426 1573 aa24.67■■□□□ 1.54
LONRF3-203ENST00000422289 BAZ1BQ9UIG0 1483 aaKnown RBP24.64■■□□□ 1.54
LONRF3-203ENST00000422289 PEG3Q9GZU2 1588 aa24.62■■□□□ 1.53
LONRF3-203ENST00000422289 SCAF1Q9H7N4 1312 aaKnown RBP24.57■■□□□ 1.52
LONRF3-203ENST00000422289 HNRNPUL2Q1KMD3 747 aaKnown RBP24.55■■□□□ 1.52
LONRF3-203ENST00000422289 CEP164Q9UPV0 1460 aa24.5■■□□□ 1.51
LONRF3-203ENST00000422289 CLIP1P30622 1438 aa24.48■■□□□ 1.51
LONRF3-203ENST00000422289 DIEXFQ68CQ4 756 aaKnown RBP24.46■■□□□ 1.51
LONRF3-203ENST00000422289 RAPGEF2Q9Y4G8 1499 aa24.46■■□□□ 1.51
LONRF3-203ENST00000422289 APLP2Q06481 763 aa24.38■■□□□ 1.49
LONRF3-203ENST00000422289 KIF21BO75037 1637 aa24.37■■□□□ 1.49
LONRF3-203ENST00000422289 VPS8Q8N3P4 1428 aa24.3■■□□□ 1.48
LONRF3-203ENST00000422289 NEUROD1Q13562 356 aa24.29■■□□□ 1.48
LONRF3-203ENST00000422289 TOP2BQ02880 1626 aa24.24■■□□□ 1.47
LONRF3-203ENST00000422289 ACIN1Q9UKV3 1341 aaKnown RBP24.22■■□□□ 1.47
LONRF3-203ENST00000422289 ZNF316A6NFI3 1004 aaPredicted RBP24.2■■□□□ 1.46
LONRF3-203ENST00000422289 YTHDC1Q96MU7 727 aaKnown RBP24.11■■□□□ 1.45
LONRF3-203ENST00000422289 CUX1P39880 1505 aa24.11■■□□□ 1.45
LONRF3-203ENST00000422289 KANK4Q5T7N3 995 aaPredicted RBP24.11■■□□□ 1.45
LONRF3-203ENST00000422289 NCAPD3P42695 1498 aa24.1■■□□□ 1.45
LONRF3-203ENST00000422289 BIVM-ERCC5R4GMW8 1640 aa24.09■■□□□ 1.45
LONRF3-203ENST00000422289 PRXQ9BXM0 1461 aa24.06■■□□□ 1.44
LONRF3-203ENST00000422289 GTF3C3Q9Y5Q9 886 aa24.05■■□□□ 1.44
LONRF3-203ENST00000422289 CENPBP07199 599 aaPredicted RBP24.04■■□□□ 1.44
LONRF3-203ENST00000422289 ARAP1Q96P48 1450 aa24.03■■□□□ 1.44
LONRF3-203ENST00000422289 HMGXB3Q12766 1538 aa24.02■■□□□ 1.44
LONRF3-203ENST00000422289 KIF27Q86VH2 1401 aa24.01■■□□□ 1.43
LONRF3-203ENST00000422289 MIER1Q8N108 512 aa23.98■■□□□ 1.43
LONRF3-203ENST00000422289 ITGAEP38570 1179 aa23.97■■□□□ 1.43
LONRF3-203ENST00000422289 ERICH3Q5RHP9 1530 aa23.96■■□□□ 1.43
LONRF3-203ENST00000422289 CFTRP13569 1480 aa23.96■■□□□ 1.43
LONRF3-203ENST00000422289 CUX2O14529 1486 aa23.86■■□□□ 1.41
LONRF3-203ENST00000422289 ARHGAP35Q9NRY4 1499 aa23.83■■□□□ 1.41
LONRF3-203ENST00000422289 DHX57Q6P158 1386 aaKnown RBP23.82■■□□□ 1.4
LONRF3-203ENST00000422289 MYT1Q01538 1121 aa23.8■■□□□ 1.4
LONRF3-203ENST00000422289 P3H3Q8IVL6 736 aa23.8■■□□□ 1.4
LONRF3-203ENST00000422289 IGF1RP08069 1367 aa23.79■■□□□ 1.4
LONRF3-203ENST00000422289 ATP1B4Q9UN42 357 aaPredicted RBP23.76■■□□□ 1.39
LONRF3-203ENST00000422289 CADPSQ9ULU8 1353 aa23.75■■□□□ 1.39
LONRF3-203ENST00000422289 FGD5Q6ZNL6 1462 aa23.71■■□□□ 1.39
LONRF3-203ENST00000422289 CARMIL1Q5VZK9 1371 aa23.71■■□□□ 1.39
LONRF3-203ENST00000422289 CCNB3Q8WWL7 1395 aa23.71■■□□□ 1.39
LONRF3-203ENST00000422289 RRBP1Q9P2E9 1410 aaKnown RBP23.69■■□□□ 1.38
LONRF3-203ENST00000422289 FAM50AQ14320 339 aaKnown RBP23.6■■□□□ 1.37
LONRF3-203ENST00000422289 CLSPNQ9HAW4 1339 aa23.6■■□□□ 1.37
LONRF3-203ENST00000422289 CC2D2AQ9P2K1 1620 aa23.58■■□□□ 1.37
LONRF3-203ENST00000422289 RAD54L2Q9Y4B4 1467 aa23.57■■□□□ 1.36
LONRF3-203ENST00000422289 PRDM2Q13029 1718 aa23.56■■□□□ 1.36
LONRF3-203ENST00000422289 FANCD2Q9BXW9 1451 aa23.55■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 120 ms