RNA–Protein interactions for RNA: ENST00000218652.11

NDFIP2-201, Transcript of Nedd4 family interacting protein 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NDFIP2, Length 4,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDFIP2-201ENST00000218652 DCAF8L2P0C7V8 631 aa25.72■■□□□ 1.71
NDFIP2-201ENST00000218652 SUPT5HO00267 1087 aaKnown RBP24.65■■□□□ 1.54
NDFIP2-201ENST00000218652 EHMT2Q96KQ7 1210 aa24.12■■□□□ 1.45
NDFIP2-201ENST00000218652 SHROOM4Q9ULL8 1493 aa23.9■■□□□ 1.42
NDFIP2-201ENST00000218652 PELP1Q8IZL8 1130 aaKnown RBP23.83■■□□□ 1.41
NDFIP2-201ENST00000218652 APLP2Q06481 763 aa23.41■■□□□ 1.34
NDFIP2-201ENST00000218652 PCGF6Q9BYE7 350 aa23.4■■□□□ 1.34
NDFIP2-201ENST00000218652 FAM9AQ8IZU1 332 aaPredicted RBP23.36■■□□□ 1.33
NDFIP2-201ENST00000218652 TTBK1Q5TCY1 1321 aaPredicted RBP23.33■■□□□ 1.33
NDFIP2-201ENST00000218652 NISCHQ9Y2I1 1504 aa23.2■■□□□ 1.3
NDFIP2-201ENST00000218652 CENPBP07199 599 aaPredicted RBP23.03■■□□□ 1.28
NDFIP2-201ENST00000218652 ERICH6Q7L0X2 663 aa22.97■■□□□ 1.27
NDFIP2-201ENST00000218652 RANGAP1P46060 587 aaPredicted RBP22.89■■□□□ 1.25
NDFIP2-201ENST00000218652 CCER1Q8TC90 406 aaPredicted RBP22.88■■□□□ 1.25
NDFIP2-201ENST00000218652 ZEB1P37275 1124 aaPredicted RBP22.76■■□□□ 1.23
NDFIP2-201ENST00000218652 YTHDC1Q96MU7 727 aaKnown RBP22.66■■□□□ 1.22
NDFIP2-201ENST00000218652 TRIM41Q8WV44 630 aa22.64■■□□□ 1.21
NDFIP2-201ENST00000218652 ATP1B4Q9UN42 357 aaPredicted RBP22.6■■□□□ 1.21
NDFIP2-201ENST00000218652 NEFLP07196 543 aa22.52■■□□□ 1.2
NDFIP2-201ENST00000218652 UBTFP17480 764 aaKnown RBP22.47■■□□□ 1.19
NDFIP2-201ENST00000218652 PPARGC1BQ86YN6 1023 aaKnown RBP22.42■■□□□ 1.18
NDFIP2-201ENST00000218652 MYT1Q01538 1121 aa22.32■■□□□ 1.16
NDFIP2-201ENST00000218652 HRCP23327 699 aa22.11■■□□□ 1.13
NDFIP2-201ENST00000218652 TRIM26Q12899 539 aaPredicted RBP22.08■■□□□ 1.13
NDFIP2-201ENST00000218652 ITGAEP38570 1179 aa21.97■■□□□ 1.11
NDFIP2-201ENST00000218652 POLR3GLQ9BT43 218 aa21.93■■□□□ 1.1
NDFIP2-201ENST00000218652 DAXXQ9UER7 740 aaPredicted RBP21.91■■□□□ 1.1
NDFIP2-201ENST00000218652 LOC105371045A0A1W2PR82 267 aa21.89■■□□□ 1.1
NDFIP2-201ENST00000218652 CNGB1Q14028 1251 aaPredicted RBP21.89■■□□□ 1.1
NDFIP2-201ENST00000218652 HNRNPUL2Q1KMD3 747 aaKnown RBP21.83■■□□□ 1.08
NDFIP2-201ENST00000218652 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.67■■□□□ 1.06
NDFIP2-201ENST00000218652 CHIC1Q5VXU3 224 aa21.63■■□□□ 1.05
NDFIP2-201ENST00000218652 MYT1LQ9UL68 1186 aa21.62■■□□□ 1.05
NDFIP2-201ENST00000218652 DIEXFQ68CQ4 756 aaKnown RBP21.57■■□□□ 1.04
NDFIP2-201ENST00000218652 RTL5Q5HYW3 569 aaPredicted RBP21.5■■□□□ 1.03
NDFIP2-201ENST00000218652 CLSPNQ9HAW4 1339 aa21.45■■□□□ 1.02
NDFIP2-201ENST00000218652 SLC4A1APQ9BWU0 796 aaKnown RBP21.38■■□□□ 1.01
NDFIP2-201ENST00000218652 ZNF316A6NFI3 1004 aaPredicted RBP21.37■■□□□ 1.01
NDFIP2-201ENST00000218652 BCANQ96GW7 911 aa21.37■■□□□ 1.01
NDFIP2-201ENST00000218652 GTF3C3Q9Y5Q9 886 aa21.33■■□□□ 1
NDFIP2-201ENST00000218652 NEUROD1Q13562 356 aa21.19■□□□□ 0.98
NDFIP2-201ENST00000218652 FAM50AQ14320 339 aaKnown RBP21.19■□□□□ 0.98
NDFIP2-201ENST00000218652 TRIM52Q96A61 297 aa21.12■□□□□ 0.97
NDFIP2-201ENST00000218652 CDK11AQ9UQ88 783 aaPredicted RBP21.04■□□□□ 0.96
NDFIP2-201ENST00000218652 ZNF326Q5BKZ1 582 aaKnown RBP21.02■□□□□ 0.96
NDFIP2-201ENST00000218652 ANP32CO43423 234 aa21.01■□□□□ 0.95
NDFIP2-201ENST00000218652 BCL11AQ9H165 835 aa20.95■□□□□ 0.94
NDFIP2-201ENST00000218652 ACIN1Q9UKV3 1341 aaKnown RBP20.88■□□□□ 0.93
NDFIP2-201ENST00000218652 ZBTB47Q9UFB7 747 aaPredicted RBP20.84■□□□□ 0.93
NDFIP2-201ENST00000218652 CANXP27824 592 aaKnown RBP20.74■□□□□ 0.91
NDFIP2-201ENST00000218652 SCAF1Q9H7N4 1312 aaKnown RBP20.73■□□□□ 0.91
NDFIP2-201ENST00000218652 NPM2Q86SE8 214 aaKnown RBP20.72■□□□□ 0.91
NDFIP2-201ENST00000218652 ANP32AP39687 249 aaKnown RBP20.7■□□□□ 0.9
NDFIP2-201ENST00000218652 SLC24A1O60721 1099 aa20.7■□□□□ 0.9
NDFIP2-201ENST00000218652 EIF5BO60841 1220 aaKnown RBP20.69■□□□□ 0.9
NDFIP2-201ENST00000218652 FKBP8Q14318 412 aa20.62■□□□□ 0.89
NDFIP2-201ENST00000218652 PABPN1Q86U42 306 aaKnown RBP eCLIP20.61■□□□□ 0.89
NDFIP2-201ENST00000218652 P3H3Q8IVL6 736 aa20.6■□□□□ 0.89
NDFIP2-201ENST00000218652 ARID3CA6NKF2 412 aa20.59■□□□□ 0.89
NDFIP2-201ENST00000218652 FBLN2P98095 1184 aa20.55■□□□□ 0.88
NDFIP2-201ENST00000218652 NEFMP07197 916 aa20.53■□□□□ 0.88
NDFIP2-201ENST00000218652 HNRNPUQ00839 825 aaKnown RBP eCLIP20.49■□□□□ 0.87
NDFIP2-201ENST00000218652 DDX10Q13206 875 aaKnown RBP20.46■□□□□ 0.87
NDFIP2-201ENST00000218652 CSRNP3Q8WYN3 585 aa20.46■□□□□ 0.87
NDFIP2-201ENST00000218652 SALL2Q9Y467 1007 aaPredicted RBP20.45■□□□□ 0.86
NDFIP2-201ENST00000218652 FAM9BQ8IZU0 186 aa20.43■□□□□ 0.86
NDFIP2-201ENST00000218652 ZNF777Q9ULD5 760 aaPredicted RBP20.42■□□□□ 0.86
NDFIP2-201ENST00000218652 HSP90AA1P07900 732 aaKnown RBP20.41■□□□□ 0.86
NDFIP2-201ENST00000218652 ANP32BQ92688 251 aaKnown RBP20.37■□□□□ 0.85
NDFIP2-201ENST00000218652 NBR1Q14596 966 aa20.36■□□□□ 0.85
NDFIP2-201ENST00000218652 CCDC136Q96JN2 1154 aa20.3■□□□□ 0.84
NDFIP2-201ENST00000218652 ARXQ96QS3 562 aa20.3■□□□□ 0.84
NDFIP2-201ENST00000218652 TONSLQ96HA7 1378 aa20.29■□□□□ 0.84
NDFIP2-201ENST00000218652 UPF2Q9HAU5 1272 aaKnown RBP20.29■□□□□ 0.84
NDFIP2-201ENST00000218652 DCAF1Q9Y4B6 1507 aa20.26■□□□□ 0.83
NDFIP2-201ENST00000218652 IRX6P78412 446 aaPredicted RBP20.22■□□□□ 0.83
NDFIP2-201ENST00000218652 TMC1Q8TDI8 760 aa20.22■□□□□ 0.83
NDFIP2-201ENST00000218652 CHGAP10645 457 aaKnown RBP20.21■□□□□ 0.83
NDFIP2-201ENST00000218652 ABCC9O60706 1549 aa20.19■□□□□ 0.82
NDFIP2-201ENST00000218652 MYO15BQ96JP2 1530 aa20.18■□□□□ 0.82
NDFIP2-201ENST00000218652 MIER1Q8N108 512 aa20.17■□□□□ 0.82
NDFIP2-201ENST00000218652 HIRIP3Q9BW71 556 aaPredicted RBP20.15■□□□□ 0.82
NDFIP2-201ENST00000218652 MRS2Q9HD23 443 aa20.15■□□□□ 0.82
NDFIP2-201ENST00000218652 GLIPR1L2Q4G1C9 344 aa20.13■□□□□ 0.81
NDFIP2-201ENST00000218652 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.13■□□□□ 0.81
NDFIP2-201ENST00000218652 CHIC2Q9UKJ5 165 aa20.12■□□□□ 0.81
NDFIP2-201ENST00000218652 STAG3Q9UJ98 1225 aa20.03■□□□□ 0.8
NDFIP2-201ENST00000218652 KDM2AQ9Y2K7 1162 aa20.03■□□□□ 0.8
NDFIP2-201ENST00000218652 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.01■□□□□ 0.793e-6■□□□□ 9
NDFIP2-201ENST00000218652 WDR43Q15061 677 aaKnown RBP eCLIP20■□□□□ 0.79
NDFIP2-201ENST00000218652 ESF1Q9H501 851 aaKnown RBP20■□□□□ 0.79
NDFIP2-201ENST00000218652 SENP3-EIF4A1A0A087X0R7 540 aa19.98■□□□□ 0.79
NDFIP2-201ENST00000218652 PLPPR3Q6T4P5 718 aa19.98■□□□□ 0.79
NDFIP2-201ENST00000218652 EIF4G2P78344 907 aaKnown RBP eCLIP19.85■□□□□ 0.77
NDFIP2-201ENST00000218652 TSPY4P0CV99 314 aa19.84■□□□□ 0.77
NDFIP2-201ENST00000218652 TSPY10P0CW01 314 aa19.84■□□□□ 0.77
NDFIP2-201ENST00000218652 SENP3Q9H4L4 574 aaPredicted RBP19.8■□□□□ 0.76
NDFIP2-201ENST00000218652 TRIM44Q96DX7 344 aaPredicted RBP19.8■□□□□ 0.76
NDFIP2-201ENST00000218652 SUPT16HQ9Y5B9 1047 aaKnown RBP19.8■□□□□ 0.76
NDFIP2-201ENST00000218652 MYH16Q9H6N6 1097 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 106.6 ms