Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
NKX3-1Q99801 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
NKX3-1Q99801 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
NKX3-1Q99801 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
NKX3-1Q99801 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
NKX3-1Q99801 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC21.99■■□□□ 1.11
NKX3-1Q99801 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
NKX3-1Q99801 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC21.99■■□□□ 1.11
NKX3-1Q99801 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
NKX3-1Q99801 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
NKX3-1Q99801 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
NKX3-1Q99801 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
NKX3-1Q99801 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC21.99■■□□□ 1.11
NKX3-1Q99801 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
NKX3-1Q99801 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC21.98■■□□□ 1.11
NKX3-1Q99801 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NKX3-1Q99801 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC21.97■■□□□ 1.11
NKX3-1Q99801 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC21.97■■□□□ 1.11
NKX3-1Q99801 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NKX3-1Q99801 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NKX3-1Q99801 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
NKX3-1Q99801 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NKX3-1Q99801 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
NKX3-1Q99801 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC21.96■■□□□ 1.11
NKX3-1Q99801 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
NKX3-1Q99801 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC21.95■■□□□ 1.1
NKX3-1Q99801 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC21.95■■□□□ 1.1
NKX3-1Q99801 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC21.95■■□□□ 1.1
NKX3-1Q99801 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
NKX3-1Q99801 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC21.94■■□□□ 1.1
NKX3-1Q99801 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
NKX3-1Q99801 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
NKX3-1Q99801 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC21.94■■□□□ 1.1
NKX3-1Q99801 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
NKX3-1Q99801 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
NKX3-1Q99801 CREM-210ENST00000374721 2020 ntTSL 5 BASIC21.93■■□□□ 1.1
NKX3-1Q99801 AC135731.1-201ENST00000569415 2548 ntBASIC21.92■■□□□ 1.1
NKX3-1Q99801 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
NKX3-1Q99801 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC21.92■■□□□ 1.1
NKX3-1Q99801 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC21.92■■□□□ 1.1
NKX3-1Q99801 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
NKX3-1Q99801 MIR762-201ENST00000390236 83 ntBASIC21.92■■□□□ 1.1
NKX3-1Q99801 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
NKX3-1Q99801 SHF-208ENST00000560734 1731 ntTSL 3 BASIC21.92■■□□□ 1.1
NKX3-1Q99801 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
NKX3-1Q99801 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
NKX3-1Q99801 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
NKX3-1Q99801 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
NKX3-1Q99801 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC21.9■■□□□ 1.1
NKX3-1Q99801 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC21.89■■□□□ 1.1
NKX3-1Q99801 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC21.89■■□□□ 1.1
NKX3-1Q99801 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
NKX3-1Q99801 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
NKX3-1Q99801 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC21.89■■□□□ 1.09
NKX3-1Q99801 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
NKX3-1Q99801 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC21.89■■□□□ 1.09
NKX3-1Q99801 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
NKX3-1Q99801 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC21.88■■□□□ 1.09
NKX3-1Q99801 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.09
NKX3-1Q99801 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
NKX3-1Q99801 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
NKX3-1Q99801 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
NKX3-1Q99801 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
NKX3-1Q99801 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
NKX3-1Q99801 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
NKX3-1Q99801 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
NKX3-1Q99801 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC21.87■■□□□ 1.09
NKX3-1Q99801 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
NKX3-1Q99801 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
NKX3-1Q99801 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
NKX3-1Q99801 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
NKX3-1Q99801 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
NKX3-1Q99801 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
NKX3-1Q99801 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NKX3-1Q99801 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NKX3-1Q99801 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC21.85■■□□□ 1.09
NKX3-1Q99801 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC21.85■■□□□ 1.09
NKX3-1Q99801 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NKX3-1Q99801 AL449106.1-201ENST00000608517 1980 ntBASIC21.84■■□□□ 1.09
NKX3-1Q99801 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
NKX3-1Q99801 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
NKX3-1Q99801 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
NKX3-1Q99801 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
NKX3-1Q99801 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC21.83■■□□□ 1.09
NKX3-1Q99801 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
NKX3-1Q99801 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC21.83■■□□□ 1.09
NKX3-1Q99801 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
NKX3-1Q99801 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC21.83■■□□□ 1.08
NKX3-1Q99801 AP002414.2-202ENST00000590929 1450 ntBASIC21.82■■□□□ 1.08
NKX3-1Q99801 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
NKX3-1Q99801 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NKX3-1Q99801 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
NKX3-1Q99801 RPS2P35-201ENST00000443417 897 ntBASIC21.81■■□□□ 1.08
NKX3-1Q99801 RPS2-209ENST00000529806 993 ntTSL 3 BASIC21.81■■□□□ 1.08
NKX3-1Q99801 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
NKX3-1Q99801 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC21.81■■□□□ 1.08
NKX3-1Q99801 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
NKX3-1Q99801 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NKX3-1Q99801 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
NKX3-1Q99801 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC21.8■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms