Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 EHMT1-201ENST00000371394 2679 ntTSL 216.16■□□□□ 0.181e-8■■■■■ 27.1
YBX3P16989 C1orf174-202ENST00000474140 3499 ntTSL 514.94□□□□□ -0.021e-8■■■■■ 27.1
YBX3P16989 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.051e-8■■■■■ 27.1
YBX3P16989 EHMT1-228ENST00000636027 3114 ntTSL 511.95□□□□□ -0.51e-8■■■■■ 27.1
YBX3P16989 EHMT1-206ENST00000465566 503 ntTSL 310.5□□□□□ -0.731e-8■■■■■ 27.1
YBX3P16989 RPRD1A-205ENST00000587563 643 ntTSL 39.2□□□□□ -0.941e-8■■■■■ 27.1
YBX3P16989 RPRD1A-203ENST00000585879 425 ntTSL 38.82□□□□□ -11e-8■■■■■ 27.1
YBX3P16989 HDLBP-218ENST00000441124 708 ntTSL 226.6■■□□□ 1.852e-12■■■■■ 27.1
YBX3P16989 HDLBP-217ENST00000430918 612 ntTSL 314.07□□□□□ -0.162e-12■■■■■ 27.1
YBX3P16989 HDLBP-221ENST00000444092 598 ntTSL 213.86□□□□□ -0.192e-12■■■■■ 27.1
YBX3P16989 LYPLA1-211ENST00000521856 764 ntTSL 210.6□□□□□ -0.712e-8■■■■■ 27.1
YBX3P16989 FLII-229ENST00000584444 782 ntTSL 315.74■□□□□ 0.111e-6■■■■■ 27
YBX3P16989 AAMP-210ENST00000494720 1134 ntTSL 230.64■■■□□ 2.53e-9■■■■■ 27
YBX3P16989 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.443e-9■■■■■ 27
YBX3P16989 AAMP-203ENST00000422731 742 ntTSL 317.65■□□□□ 0.423e-9■■■■■ 27
YBX3P16989 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC17.56■□□□□ 0.43e-9■■■■■ 27
YBX3P16989 AAMP-208ENST00000475678 2270 ntTSL 216.84■□□□□ 0.293e-9■■■■■ 27
YBX3P16989 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.273e-9■■■■■ 27
YBX3P16989 AAMP-209ENST00000489767 1833 ntTSL 516.76■□□□□ 0.273e-9■■■■■ 27
YBX3P16989 PSMD5-201ENST00000210313 3443 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.248e-7■■■■■ 27
YBX3P16989 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.092e-6■■■■■ 27
YBX3P16989 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC14.97□□□□□ -0.012e-6■■■■■ 27
YBX3P16989 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.453e-6■■■■■ 26.9
YBX3P16989 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.143e-6■■■■■ 26.9
YBX3P16989 NEK7-206ENST00000493790 1021 ntTSL 29.31□□□□□ -0.923e-6■■■■■ 26.9
YBX3P16989 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.224e-9■■■■■ 26.9
YBX3P16989 TMEM30A-203ENST00000475111 2791 ntTSL 1 (best) BASIC13.77□□□□□ -0.24e-9■■■■■ 26.9
YBX3P16989 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.78□□□□□ -1.644e-9■■■■■ 26.9
YBX3P16989 GUSB-206ENST00000461622 491 ntTSL 1 (best)3.93□□□□□ -1.789e-7■■■■■ 26.9
YBX3P16989 TMEM33-201ENST00000264452 1570 ntTSL 1 (best)24.75■■□□□ 1.555e-7■■■■■ 26.8
YBX3P16989 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.785e-7■■■■■ 26.8
YBX3P16989 TMEM33-205ENST00000508448 867 ntTSL 514.63□□□□□ -0.075e-7■■■■■ 26.8
YBX3P16989 TMEM33-206ENST00000510383 697 ntTSL 314.52□□□□□ -0.095e-7■■■■■ 26.8
YBX3P16989 TMEM33-204ENST00000506794 574 ntTSL 512.41□□□□□ -0.425e-7■■■■■ 26.8
YBX3P16989 ANXA2-233ENST00000560468 663 ntTSL 513.07□□□□□ -0.321e-10■■■■■ 26.8
YBX3P16989 COPB2-210ENST00000512309 565 ntTSL 58.44□□□□□ -1.064e-7■■■■■ 26.8
YBX3P16989 WDR82-204ENST00000487402 4333 ntTSL 210.44□□□□□ -0.741e-12■■■■■ 26.8
YBX3P16989 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC20.71■□□□□ 0.912e-7■■■■■ 26.8
YBX3P16989 HCFC1-203ENST00000444191 3624 ntTSL 511.84□□□□□ -0.513e-9■■■■■ 26.8
YBX3P16989 NDUFA3-210ENST00000471292 646 ntTSL 2 BASIC13.36□□□□□ -0.277e-16■■■■□ 26.7
YBX3P16989 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC26.92■■□□□ 1.91e-6■■■■□ 26.7
YBX3P16989 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.511e-6■■■■□ 26.7
YBX3P16989 DGCR6L-203ENST00000443409 935 ntTSL 1 (best)21.67■■□□□ 1.061e-6■■■■□ 26.7
YBX3P16989 TNS1-207ENST00000430930 5900 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.273e-7■■■■□ 26.7
YBX3P16989 TNS1-205ENST00000419504 5921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.273e-7■■■■□ 26.7
YBX3P16989 TNS1-220ENST00000611415 6509 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.463e-7■■■■□ 26.7
YBX3P16989 TNS1-221ENST00000615025 6488 ntTSL 5 BASIC11.2□□□□□ -0.623e-7■■■■□ 26.7
YBX3P16989 TNS1-209ENST00000446688 4292 ntTSL 1 (best) BASIC10.18□□□□□ -0.783e-7■■■■□ 26.7
YBX3P16989 TNS1-201ENST00000171887 10331 ntAPPRIS P3 TSL 1 (best) BASIC9.25□□□□□ -0.933e-7■■■■□ 26.7
YBX3P16989 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC20.72■□□□□ 0.915e-7■■■■□ 26.7
YBX3P16989 TOM1-205ENST00000424387 2211 ntTSL 518.31■□□□□ 0.525e-7■■■■□ 26.7
YBX3P16989 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC18.19■□□□□ 0.55e-7■■■■□ 26.7
YBX3P16989 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.415e-7■■■■□ 26.7
YBX3P16989 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.375e-7■■■■□ 26.7
YBX3P16989 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC17.23■□□□□ 0.355e-7■■■■□ 26.7
YBX3P16989 TOM1-203ENST00000404284 2622 ntTSL 215.93■□□□□ 0.145e-7■■■■□ 26.7
YBX3P16989 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.97□□□□□ -0.019e-11■■■■□ 26.7
YBX3P16989 PIK3R4-201ENST00000356763 5015 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.566e-7■■■■□ 26.6
YBX3P16989 SUPT6H-209ENST00000583972 1969 ntTSL 215.08■□□□□ 02e-8■■■■□ 26.6
YBX3P16989 MAPKAP1-211ENST00000433483 769 ntTSL 528.39■■■□□ 2.142e-8■■■■□ 26.6
YBX3P16989 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC17.84■□□□□ 0.452e-8■■■■□ 26.6
YBX3P16989 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.292e-8■■■■□ 26.6
YBX3P16989 NOLC1-203ENST00000461421 777 ntTSL 38.09□□□□□ -1.116e-7■■■■□ 26.6
YBX3P16989 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC19.85■□□□□ 0.771e-7■■■■□ 26.5
YBX3P16989 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.751e-7■■■■□ 26.5
YBX3P16989 MRPL34-206ENST00000602206 603 ntTSL 3 BASIC16.62■□□□□ 0.251e-7■■■■□ 26.5
YBX3P16989 FP236383.1-201ENST00000623860 2498 ntTSL 2 BASIC16.38■□□□□ 0.212e-22■■■■□ 26.5
YBX3P16989 RTEL1-210ENST00000496816 2222 ntTSL 1 (best)20.25■□□□□ 0.831e-7■■■■□ 26.5
YBX3P16989 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC19.55■□□□□ 0.721e-7■■■■□ 26.5
YBX3P16989 RTEL1-TNFRSF6B-204ENST00000496281 5314 ntTSL 218.36■□□□□ 0.531e-7■■■■□ 26.5
YBX3P16989 RTEL1-TNFRSF6B-201ENST00000480273 5751 ntTSL 217.4■□□□□ 0.381e-7■■■■□ 26.5
YBX3P16989 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17.02■□□□□ 0.321e-7■■■■□ 26.5
YBX3P16989 RTEL1-TNFRSF6B-203ENST00000492259 4824 ntAPPRIS ALT2 TSL 515.33■□□□□ 0.051e-7■■■■□ 26.5
YBX3P16989 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC15.26■□□□□ 0.031e-7■■■■□ 26.5
YBX3P16989 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC15.14■□□□□ 0.011e-7■■■■□ 26.5
YBX3P16989 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.031e-7■■■■□ 26.5
YBX3P16989 RTEL1-211ENST00000508582 4273 ntTSL 2 BASIC13.2□□□□□ -0.31e-7■■■■□ 26.5
YBX3P16989 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC25.12■■□□□ 1.612e-6■■■■□ 26.4
YBX3P16989 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC18.78■□□□□ 0.62e-6■■■■□ 26.4
YBX3P16989 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.482e-6■■■■□ 26.4
YBX3P16989 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC17.98■□□□□ 0.472e-6■■■■□ 26.4
YBX3P16989 VARS-222ENST00000470953 392 ntTSL 39.41□□□□□ -0.92e-9■■■■□ 26.4
YBX3P16989 POLD1-213ENST00000601098 783 ntTSL 322.84■■□□□ 1.256e-11■■■■□ 26.4
YBX3P16989 POLD1-211ENST00000600746 999 ntTSL 522.52■■□□□ 1.26e-11■■■■□ 26.4
YBX3P16989 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.183e-7■■■■□ 26.4
YBX3P16989 LAMB1-204ENST00000393561 5766 ntTSL 5 BASIC11.95□□□□□ -0.53e-7■■■■□ 26.4
YBX3P16989 MAPK9-204ENST00000393362 1344 ntTSL 544.35■■■■■ 4.697e-7■■■■□ 26.4
YBX3P16989 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC32.59■■■□□ 2.817e-7■■■■□ 26.4
YBX3P16989 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC26.1■■□□□ 1.777e-7■■■■□ 26.4
YBX3P16989 MAPK9-205ENST00000397072 1416 ntTSL 1 (best) BASIC14.26□□□□□ -0.137e-7■■■■□ 26.4
YBX3P16989 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC8.37□□□□□ -1.077e-7■■■■□ 26.4
YBX3P16989 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.443e-7■■■■□ 26.4
YBX3P16989 S100A13-206ENST00000491177 2184 ntTSL 216.78■□□□□ 0.283e-7■■■■□ 26.4
YBX3P16989 S100A13-205ENST00000476133 710 ntTSL 1 (best)12.64□□□□□ -0.393e-7■■■■□ 26.4
YBX3P16989 S100A13-202ENST00000392622 547 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.463e-7■■■■□ 26.4
YBX3P16989 S100A13-204ENST00000440685 686 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.683e-7■■■■□ 26.4
YBX3P16989 S100A13-201ENST00000339556 514 ntAPPRIS P1 TSL 2 BASIC9.95□□□□□ -0.823e-7■■■■□ 26.4
YBX3P16989 CSAG1-201ENST00000361211 630 ntTSL 1 (best)19.48■□□□□ 0.713e-7■■■■□ 26.4
YBX3P16989 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.713e-7■■■■□ 26.4
YBX3P16989 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.453e-7■■■■□ 26.4
Retrieved 100 of 29,075 protein–RNA pairs in 83.9 ms