RNA–Protein interactions for RNA: ENST00000404284.6

TOM1-203, Transcript of target of myb1 membrane trafficking protein, humanhuman

TSL 2

Gene TOM1, Length 2,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOM1-203ENST00000404284 NISCHQ9Y2I1 1504 aa32.71■■■□□ 2.83
TOM1-203ENST00000404284 CCDC180Q9P1Z9 1646 aa27.89■■■□□ 2.05
TOM1-203ENST00000404284 SHROOM4Q9ULL8 1493 aa27.73■■■□□ 2.03
TOM1-203ENST00000404284 ZCCHC6Q5VYS8 1495 aaKnown RBP27.71■■■□□ 2.03
TOM1-203ENST00000404284 SUPT5HO00267 1087 aaKnown RBP27.16■■□□□ 1.94
TOM1-203ENST00000404284 DCAF1Q9Y4B6 1507 aa26.91■■□□□ 1.9
TOM1-203ENST00000404284 DCAF8L2P0C7V8 631 aa26.85■■□□□ 1.89
TOM1-203ENST00000404284 CHIC1Q5VXU3 224 aa26.52■■□□□ 1.84
TOM1-203ENST00000404284 MYO15BQ96JP2 1530 aa26.48■■□□□ 1.83
TOM1-203ENST00000404284 ABCC9O60706 1549 aa26.16■■□□□ 1.78
TOM1-203ENST00000404284 SCRIBQ14160 1630 aa26.03■■□□□ 1.76
TOM1-203ENST00000404284 RSF1Q96T23 1441 aaPredicted RBP25.86■■□□□ 1.73
TOM1-203ENST00000404284 NACADO15069 1562 aa25.72■■□□□ 1.71
TOM1-203ENST00000404284 HRCP23327 699 aa25.71■■□□□ 1.71
TOM1-203ENST00000404284 LOC105371045A0A1W2PR82 267 aa25.66■■□□□ 1.7
TOM1-203ENST00000404284 RB1CC1Q8TDY2 1594 aa25.62■■□□□ 1.69
TOM1-203ENST00000404284 PCGF6Q9BYE7 350 aa25.62■■□□□ 1.69
TOM1-203ENST00000404284 CECR2Q9BXF3 1484 aa25.47■■□□□ 1.67
TOM1-203ENST00000404284 MROH2BQ7Z745 1585 aa25.41■■□□□ 1.66
TOM1-203ENST00000404284 TRIM41Q8WV44 630 aa25.33■■□□□ 1.65
TOM1-203ENST00000404284 WIZO95785 1651 aa25.28■■□□□ 1.64
TOM1-203ENST00000404284 TRIM26Q12899 539 aaPredicted RBP25.19■■□□□ 1.62
TOM1-203ENST00000404284 BAZ1AQ9NRL2 1556 aaPredicted RBP25.18■■□□□ 1.62
TOM1-203ENST00000404284 PPARGC1BQ86YN6 1023 aaKnown RBP25.11■■□□□ 1.61
TOM1-203ENST00000404284 FAM9AQ8IZU1 332 aaPredicted RBP25.07■■□□□ 1.6
TOM1-203ENST00000404284 PELP1Q8IZL8 1130 aaKnown RBP25.06■■□□□ 1.6
TOM1-203ENST00000404284 EIF4G1Q04637 1599 aaKnown RBP25.05■■□□□ 1.6
TOM1-203ENST00000404284 UNC13AQ9UPW8 1703 aa24.97■■□□□ 1.59
TOM1-203ENST00000404284 SMARCA4P51532 1647 aa24.93■■□□□ 1.58
TOM1-203ENST00000404284 TOP2AP11388 1531 aaKnown RBP24.92■■□□□ 1.58
TOM1-203ENST00000404284 EHMT2Q96KQ7 1210 aa24.8■■□□□ 1.56
TOM1-203ENST00000404284 SMARCA2P51531 1590 aa24.78■■□□□ 1.56
TOM1-203ENST00000404284 CCDC88BA6NC98 1476 aa24.76■■□□□ 1.55
TOM1-203ENST00000404284 ABCC8Q09428 1581 aa24.7■■□□□ 1.54
TOM1-203ENST00000404284 ZEB1P37275 1124 aaPredicted RBP24.65■■□□□ 1.54
TOM1-203ENST00000404284 BICRAQ9NZM4 1560 aa24.63■■□□□ 1.53
TOM1-203ENST00000404284 PEG3Q9GZU2 1588 aa24.5■■□□□ 1.51
TOM1-203ENST00000404284 PABPN1Q86U42 306 aaKnown RBP eCLIP24.47■■□□□ 1.51
TOM1-203ENST00000404284 SOGA1O94964 1423 aa24.44■■□□□ 1.5
TOM1-203ENST00000404284 WRNQ14191 1432 aaPredicted RBP eCLIP24.39■■□□□ 1.49
TOM1-203ENST00000404284 EEA1Q15075 1411 aa24.38■■□□□ 1.49
TOM1-203ENST00000404284 CEP162Q5TB80 1403 aa24.36■■□□□ 1.49
TOM1-203ENST00000404284 TNIKQ9UKE5 1360 aa24.33■■□□□ 1.49
TOM1-203ENST00000404284 RUSC2Q8N2Y8 1516 aa24.32■■□□□ 1.48
TOM1-203ENST00000404284 CSRNP3Q8WYN3 585 aa24.27■■□□□ 1.48
TOM1-203ENST00000404284 ATAD2BQ9ULI0 1458 aa24.25■■□□□ 1.47
TOM1-203ENST00000404284 SCAF1Q9H7N4 1312 aaKnown RBP24.23■■□□□ 1.47
TOM1-203ENST00000404284 SYNJ1O43426 1573 aa24.21■■□□□ 1.47
TOM1-203ENST00000404284 MYT1Q01538 1121 aa24.2■■□□□ 1.46
TOM1-203ENST00000404284 GOLGA3Q08378 1498 aa24.2■■□□□ 1.46
TOM1-203ENST00000404284 BAZ1BQ9UIG0 1483 aaKnown RBP24.17■■□□□ 1.46
TOM1-203ENST00000404284 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.14■■□□□ 1.45
TOM1-203ENST00000404284 UBTFP17480 764 aaKnown RBP24.11■■□□□ 1.45
TOM1-203ENST00000404284 KIF21BO75037 1637 aa24.09■■□□□ 1.45
TOM1-203ENST00000404284 CCER1Q8TC90 406 aaPredicted RBP24.06■■□□□ 1.44
TOM1-203ENST00000404284 CEP164Q9UPV0 1460 aa24.06■■□□□ 1.44
TOM1-203ENST00000404284 TTBK1Q5TCY1 1321 aaPredicted RBP24.03■■□□□ 1.44
TOM1-203ENST00000404284 TOP2BQ02880 1626 aa23.93■■□□□ 1.42
TOM1-203ENST00000404284 CLIP1P30622 1438 aa23.89■■□□□ 1.41
TOM1-203ENST00000404284 RAPGEF2Q9Y4G8 1499 aa23.87■■□□□ 1.41
TOM1-203ENST00000404284 BIVM-ERCC5R4GMW8 1640 aa23.87■■□□□ 1.41
TOM1-203ENST00000404284 HMGXB3Q12766 1538 aa23.83■■□□□ 1.41
TOM1-203ENST00000404284 VPS8Q8N3P4 1428 aa23.82■■□□□ 1.4
TOM1-203ENST00000404284 NCAPD3P42695 1498 aa23.79■■□□□ 1.4
TOM1-203ENST00000404284 ERICH3Q5RHP9 1530 aa23.7■■□□□ 1.38
TOM1-203ENST00000404284 PRXQ9BXM0 1461 aa23.68■■□□□ 1.38
TOM1-203ENST00000404284 CUX1P39880 1505 aa23.67■■□□□ 1.38
TOM1-203ENST00000404284 DIEXFQ68CQ4 756 aaKnown RBP23.62■■□□□ 1.37
TOM1-203ENST00000404284 CFTRP13569 1480 aa23.6■■□□□ 1.37
TOM1-203ENST00000404284 HNRNPUL2Q1KMD3 747 aaKnown RBP23.57■■□□□ 1.36
TOM1-203ENST00000404284 ARAP1Q96P48 1450 aa23.56■■□□□ 1.36
TOM1-203ENST00000404284 APLP2Q06481 763 aa23.56■■□□□ 1.36
TOM1-203ENST00000404284 RANGAP1P46060 587 aaPredicted RBP23.55■■□□□ 1.36
TOM1-203ENST00000404284 KIF27Q86VH2 1401 aa23.52■■□□□ 1.35
TOM1-203ENST00000404284 PRDM2Q13029 1718 aa23.5■■□□□ 1.35
TOM1-203ENST00000404284 ZNF316A6NFI3 1004 aaPredicted RBP23.46■■□□□ 1.35
TOM1-203ENST00000404284 ACIN1Q9UKV3 1341 aaKnown RBP23.45■■□□□ 1.35
TOM1-203ENST00000404284 NEUROD1Q13562 356 aa23.41■■□□□ 1.34
TOM1-203ENST00000404284 ARHGAP35Q9NRY4 1499 aa23.34■■□□□ 1.33
TOM1-203ENST00000404284 KANK4Q5T7N3 995 aaPredicted RBP23.33■■□□□ 1.33
TOM1-203ENST00000404284 GTF3C3Q9Y5Q9 886 aa23.33■■□□□ 1.33
TOM1-203ENST00000404284 CADPSQ9ULU8 1353 aa23.29■■□□□ 1.32
TOM1-203ENST00000404284 CENPBP07199 599 aaPredicted RBP23.29■■□□□ 1.32
TOM1-203ENST00000404284 RRBP1Q9P2E9 1410 aaKnown RBP23.29■■□□□ 1.32
TOM1-203ENST00000404284 CUX2O14529 1486 aa23.29■■□□□ 1.32
TOM1-203ENST00000404284 IGF1RP08069 1367 aa23.26■■□□□ 1.31
TOM1-203ENST00000404284 DHX57Q6P158 1386 aaKnown RBP23.24■■□□□ 1.31
TOM1-203ENST00000404284 CLSPNQ9HAW4 1339 aa23.23■■□□□ 1.31
TOM1-203ENST00000404284 FGD5Q6ZNL6 1462 aa23.22■■□□□ 1.31
TOM1-203ENST00000404284 CC2D2AQ9P2K1 1620 aa23.16■■□□□ 1.3
TOM1-203ENST00000404284 CARMIL1Q5VZK9 1371 aa23.15■■□□□ 1.3
TOM1-203ENST00000404284 CCNB3Q8WWL7 1395 aa23.14■■□□□ 1.29
TOM1-203ENST00000404284 MIER1Q8N108 512 aa23.12■■□□□ 1.29
TOM1-203ENST00000404284 MAP3K1Q13233 1512 aa23.11■■□□□ 1.29
TOM1-203ENST00000404284 TIAM1Q13009 1591 aa23.11■■□□□ 1.29
TOM1-203ENST00000404284 FANCD2Q9BXW9 1451 aa23.08■■□□□ 1.29
TOM1-203ENST00000404284 DNMBPQ6XZF7 1577 aa23.03■■□□□ 1.28
TOM1-203ENST00000404284 LRRC9Q6ZRR7 1453 aa23■■□□□ 1.27
TOM1-203ENST00000404284 YTHDC1Q96MU7 727 aaKnown RBP22.99■■□□□ 1.27
TOM1-203ENST00000404284 ABCA10Q8WWZ4 1543 aa22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms