Protein–RNA interactions for Protein: P53999

SUB1, Activated RNA polymerase II transcriptional coactivator p15, humanhuman

Known RBP eCLIP

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1P53999 AC005833.3-202ENST00000544741 770 ntAPPRIS P1 TSL 3 BASIC4.81□□□□□ -1.646e-8■■■□□ 14.9
SUB1P53999 AGPS-204ENST00000637633 2143 ntTSL 54.55□□□□□ -1.686e-8■■■□□ 14.9
SUB1P53999 PSMB1-202ENST00000462957 1939 ntTSL 23.97□□□□□ -1.778e-7■■■□□ 14.9
SUB1P53999 SEC24C-203ENST00000465076 4668 ntTSL 1 (best)9.7□□□□□ -0.868e-7■■■□□ 14.9
SUB1P53999 SEC24C-201ENST00000339365 4513 ntAPPRIS P1 TSL 5 BASIC9.4□□□□□ -0.98e-7■■■□□ 14.9
SUB1P53999 SEC24C-202ENST00000345254 4433 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.138e-7■■■□□ 14.9
SUB1P53999 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.556e-7■■■□□ 14.9
SUB1P53999 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC11.41□□□□□ -0.586e-7■■■□□ 14.9
SUB1P53999 EIF4A1-235ENST00000584860 1109 ntTSL 310.35□□□□□ -0.752e-6■■■□□ 14.9
SUB1P53999 EIF4A1-217ENST00000581384 642 ntTSL 57.89□□□□□ -1.152e-6■■■□□ 14.9
SUB1P53999 SUPT5H-218ENST00000600818 718 ntTSL 210.26□□□□□ -0.775e-9■■■□□ 14.9
SUB1P53999 RPL4-213ENST00000566624 819 ntTSL 27.25□□□□□ -1.252e-22■■■□□ 14.9
SUB1P53999 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC10.19□□□□□ -0.783e-29■■■□□ 14.9
SUB1P53999 LRRC75A-AS1-204ENST00000475947 598 ntTSL 27.02□□□□□ -1.293e-29■■■□□ 14.9
SUB1P53999 LRRC75A-AS1-221ENST00000580180 753 ntTSL 26.3□□□□□ -1.43e-29■■■□□ 14.9
SUB1P53999 LRRC75A-AS1-230ENST00000584926 604 ntTSL 55.96□□□□□ -1.463e-29■■■□□ 14.9
SUB1P53999 SHMT2-205ENST00000553474 1765 ntTSL 2 BASIC10.5□□□□□ -0.733e-7■■■□□ 14.9
SUB1P53999 RPLP0-218ENST00000550856 1003 ntTSL 213.45□□□□□ -0.262e-7■■■□□ 14.9
SUB1P53999 RPLP0-209ENST00000547211 781 ntTSL 39.62□□□□□ -0.872e-7■■■□□ 14.9
SUB1P53999 RPLP0-210ENST00000547475 792 ntTSL 38.25□□□□□ -1.092e-7■■■□□ 14.9
SUB1P53999 RPLP0-207ENST00000547173 864 ntTSL 37.01□□□□□ -1.292e-7■■■□□ 14.9
SUB1P53999 SNRNP40-201ENST00000263694 1597 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.193e-10■■■□□ 14.8
SUB1P53999 SNRNP40-202ENST00000373720 1087 ntTSL 1 (best) BASIC7.19□□□□□ -1.263e-10■■■□□ 14.8
SUB1P53999 SNRNP40-206ENST00000489853 1928 ntTSL 23.74□□□□□ -1.813e-10■■■□□ 14.8
SUB1P53999 SNRNP40-205ENST00000486941 743 ntTSL 22.8□□□□□ -1.963e-10■■■□□ 14.8
SUB1P53999 SNRNP40-207ENST00000491106 459 ntTSL 21.66□□□□□ -2.143e-10■■■□□ 14.8
SUB1P53999 PRRC2A-207ENST00000469501 347 ntTSL 57.25□□□□□ -1.254e-10■■■□□ 14.8
SUB1P53999 QARS-252ENST00000637908 637 ntTSL 512.17□□□□□ -0.461e-6■■■□□ 14.8
SUB1P53999 QARS-251ENST00000637543 2074 ntTSL 59.92□□□□□ -0.821e-6■■■□□ 14.8
SUB1P53999 MRPS27-202ENST00000457646 2628 ntTSL 2 BASIC6.12□□□□□ -1.434e-6■■■□□ 14.8
SUB1P53999 MRPS27-201ENST00000261413 2785 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.594e-6■■■□□ 14.8
SUB1P53999 MRPS27-206ENST00000515226 4435 ntTSL 24.81□□□□□ -1.644e-6■■■□□ 14.8
SUB1P53999 RNF10-201ENST00000325954 3825 ntTSL 1 (best) BASIC9.73□□□□□ -0.856e-10■■■□□ 14.8
SUB1P53999 RNF10-203ENST00000413266 2671 ntAPPRIS P1 TSL 5 BASIC9.35□□□□□ -0.916e-10■■■□□ 14.8
SUB1P53999 RNF10-217ENST00000542701 1388 ntTSL 57.05□□□□□ -1.286e-10■■■□□ 14.8
SUB1P53999 RNF10-222ENST00000544805 536 ntTSL 27.03□□□□□ -1.286e-10■■■□□ 14.8
SUB1P53999 RNF10-223ENST00000545419 1336 ntTSL 55.98□□□□□ -1.456e-10■■■□□ 14.8
SUB1P53999 RNF10-211ENST00000538254 661 ntTSL 35.25□□□□□ -1.576e-10■■■□□ 14.8
SUB1P53999 RNF10-206ENST00000535470 760 ntTSL 35.19□□□□□ -1.586e-10■■■□□ 14.8
SUB1P53999 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.53e-6■■■□□ 14.8
SUB1P53999 MRPL10-204ENST00000421763 1576 ntTSL 216.33■□□□□ 0.23e-6■■■□□ 14.8
SUB1P53999 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC14.55□□□□□ -0.083e-6■■■□□ 14.8
SUB1P53999 MRPL10-201ENST00000290208 2013 ntTSL 2 BASIC8.4□□□□□ -1.063e-6■■■□□ 14.8
SUB1P53999 ADIPOR1-205ENST00000495562 2109 ntTSL 27.81□□□□□ -1.162e-6■■■□□ 14.8
SUB1P53999 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC19.26■□□□□ 0.676e-14■■■□□ 14.8
SUB1P53999 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.626e-14■■■□□ 14.8
SUB1P53999 PICALM-212ENST00000529760 1153 ntTSL 53.5□□□□□ -1.856e-14■■■□□ 14.8
SUB1P53999 PICALM-205ENST00000526548 738 ntTSL 1 (best)3.34□□□□□ -1.876e-14■■■□□ 14.8
SUB1P53999 PICALM-214ENST00000530692 963 ntTSL 53.32□□□□□ -1.886e-14■■■□□ 14.8
SUB1P53999 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.592e-6■■■□□ 14.8
SUB1P53999 EIF4A1-208ENST00000578476 573 ntTSL 212.87□□□□□ -0.352e-6■■■□□ 14.8
SUB1P53999 EIF4A1-214ENST00000580461 909 ntTSL 210.1□□□□□ -0.792e-6■■■□□ 14.8
SUB1P53999 EIF4A1-213ENST00000579139 568 ntTSL 49.15□□□□□ -0.942e-6■■■□□ 14.8
SUB1P53999 EIF4A1-231ENST00000584054 716 ntTSL 27.71□□□□□ -1.182e-6■■■□□ 14.8
SUB1P53999 EIF4A1-215ENST00000580886 562 ntTSL 27.71□□□□□ -1.182e-6■■■□□ 14.8
SUB1P53999 EIF4A1-232ENST00000584712 782 ntTSL 27.63□□□□□ -1.192e-6■■■□□ 14.8
SUB1P53999 EIF4A1-212ENST00000579085 569 ntTSL 46.25□□□□□ -1.412e-6■■■□□ 14.8
SUB1P53999 EIF4A1-224ENST00000582213 560 ntTSL 42.77□□□□□ -1.972e-6■■■□□ 14.8
SUB1P53999 RPL23-210ENST00000584583 429 ntTSL 25.33□□□□□ -1.561e-54■■■□□ 14.8
SUB1P53999 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.024e-10■■■□□ 14.7
SUB1P53999 CPSF3-202ENST00000460593 3157 ntTSL 1 (best) BASIC9.28□□□□□ -0.924e-10■■■□□ 14.7
SUB1P53999 CPSF3-204ENST00000489403 688 ntTSL 58.98□□□□□ -0.974e-10■■■□□ 14.7
SUB1P53999 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC4.71□□□□□ -1.664e-10■■■□□ 14.7
SUB1P53999 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.814e-10■■■□□ 14.7
SUB1P53999 ARF4-201ENST00000303436 1660 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.742e-6■■■□□ 14.7
SUB1P53999 ARF4-209ENST00000496292 1467 ntTSL 5 BASIC5.62□□□□□ -1.512e-6■■■□□ 14.7
SUB1P53999 ARF4-204ENST00000486310 1601 ntTSL 35.59□□□□□ -1.512e-6■■■□□ 14.7
SUB1P53999 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC2.85□□□□□ -1.952e-6■■■□□ 14.7
SUB1P53999 MRPS7-207ENST00000584678 692 ntTSL 59.09□□□□□ -0.955e-7■■■□□ 14.7
SUB1P53999 MRPS7-205ENST00000581993 731 ntTSL 28.17□□□□□ -1.15e-7■■■□□ 14.7
SUB1P53999 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC13.44□□□□□ -0.262e-6■■■□□ 14.7
SUB1P53999 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.392e-6■■■□□ 14.7
SUB1P53999 AC016876.2-201ENST00000581621 4554 ntTSL 2 BASIC9.69□□□□□ -0.862e-6■■■□□ 14.7
SUB1P53999 SENP3-EIF4A1-201ENST00000614237 3519 ntAPPRIS P1 TSL 2 BASIC8.7□□□□□ -1.022e-6■■■□□ 14.7
SUB1P53999 EIF4A1-225ENST00000582746 1645 ntTSL 5 BASIC8.65□□□□□ -1.022e-6■■■□□ 14.7
SUB1P53999 RPL5-205ENST00000497519 1210 ntTSL 27.74□□□□□ -1.172e-17■■■□□ 14.7
SUB1P53999 TRIM28-204ENST00000594806 861 ntTSL 519.8■□□□□ 0.765e-7■■■□□ 14.7
SUB1P53999 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC14.54□□□□□ -0.085e-10■■■□□ 14.7
SUB1P53999 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.465e-10■■■□□ 14.7
SUB1P53999 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC11.32□□□□□ -0.65e-10■■■□□ 14.7
SUB1P53999 TOMM20-203ENST00000473132 365 ntTSL 22.93□□□□□ -1.943e-12■■■□□ 14.7
SUB1P53999 TOMM20-202ENST00000467767 377 ntTSL 31.81□□□□□ -2.123e-12■■■□□ 14.7
SUB1P53999 SNRPC-204ENST00000474635 511 ntTSL 56.51□□□□□ -1.377e-10■■■□□ 14.7
SUB1P53999 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.542e-6■■■□□ 14.7
SUB1P53999 TOP3B-213ENST00000457179 3061 ntTSL 510.66□□□□□ -0.72e-6■■■□□ 14.7
SUB1P53999 TOP3B-202ENST00000398793 3107 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.772e-6■■■□□ 14.7
SUB1P53999 TOP3B-210ENST00000444502 4163 ntTSL 28.94□□□□□ -0.982e-6■■■□□ 14.7
SUB1P53999 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.66e-7■■■□□ 14.6
SUB1P53999 AKT1-204ENST00000544168 1564 ntTSL 213.75□□□□□ -0.211e-8■■■□□ 14.6
SUB1P53999 AKT1-209ENST00000554585 858 ntTSL 311.47□□□□□ -0.571e-8■■■□□ 14.6
SUB1P53999 VWDE-203ENST00000452576 5936 ntTSL 1 (best)11.33□□□□□ -0.66e-7■■■□□ 14.6
SUB1P53999 VWDE-201ENST00000275358 5260 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.666e-7■■■□□ 14.6
SUB1P53999 VWDE-206ENST00000614403 4701 ntTSL 1 (best) BASIC10□□□□□ -0.816e-7■■■□□ 14.6
SUB1P53999 VWDE-205ENST00000521169 4700 ntTSL 510□□□□□ -0.816e-7■■■□□ 14.6
SUB1P53999 EIF4A1-228ENST00000583389 951 ntTSL 311.33□□□□□ -0.62e-6■■■□□ 14.6
SUB1P53999 RBM25-205ENST00000527432 3375 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.226e-13■■■□□ 14.6
SUB1P53999 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.316e-13■■■□□ 14.6
SUB1P53999 RBM25-212ENST00000532683 6848 ntTSL 1 (best)5.16□□□□□ -1.586e-13■■■□□ 14.6
SUB1P53999 RBM25-207ENST00000528081 3008 ntTSL 24.76□□□□□ -1.656e-13■■■□□ 14.6
SUB1P53999 RBM25-206ENST00000527449 3469 ntTSL 1 (best)2.34□□□□□ -2.036e-13■■■□□ 14.6
Retrieved 100 of 11,644 protein–RNA pairs in 98.4 ms