RNA–Protein interactions for RNA: ENST00000489853.1

SNRNP40-206, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 1,928 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-206ENST00000489853 AEBP2Q6ZN18 517 aaPredicted RBP13.87□□□□□ -0.19
SNRNP40-206ENST00000489853 CHIC1Q5VXU3 224 aa13.04□□□□□ -0.32
SNRNP40-206ENST00000489853 SENP3Q9H4L4 574 aaPredicted RBP11.78□□□□□ -0.52
SNRNP40-206ENST00000489853 PHF23Q9BUL5 403 aaPredicted RBP11.64□□□□□ -0.55
SNRNP40-206ENST00000489853 POTEDQ86YR6 584 aa11.47□□□□□ -0.57
SNRNP40-206ENST00000489853 FOXD1Q16676 465 aa11.03□□□□□ -0.64
SNRNP40-206ENST00000489853 MSH5O43196 834 aa10.41□□□□□ -0.74
SNRNP40-206ENST00000489853 PLPPR3Q6T4P5 718 aa10.35□□□□□ -0.75
SNRNP40-206ENST00000489853 PPP6R1Q9UPN7 881 aa10.27□□□□□ -0.76
SNRNP40-206ENST00000489853 PIAS4Q8N2W9 510 aaPredicted RBP10.27□□□□□ -0.77
SNRNP40-206ENST00000489853 ADRA2BP18089 450 aa10.21□□□□□ -0.77
SNRNP40-206ENST00000489853 MAPK8IP2Q13387 824 aaPredicted RBP9.43□□□□□ -0.9
SNRNP40-206ENST00000489853 DMRT2Q9Y5R5 561 aa9.35□□□□□ -0.91
SNRNP40-206ENST00000489853 CACNB1Q02641 598 aaPredicted RBP9.33□□□□□ -0.92
SNRNP40-206ENST00000489853 SCAF1Q9H7N4 1312 aaKnown RBP9.27□□□□□ -0.93
SNRNP40-206ENST00000489853 EHMT2Q96KQ7 1210 aa9.25□□□□□ -0.93
SNRNP40-206ENST00000489853 KCNA4P22459 653 aa9.19□□□□□ -0.94
SNRNP40-206ENST00000489853 PPP4R3CPQ6ZMV5 832 aa9.08□□□□□ -0.96
SNRNP40-206ENST00000489853 DCAF8L1A6NGE4 600 aa8.96□□□□□ -0.97
SNRNP40-206ENST00000489853 HOXD11P31277 338 aaPredicted RBP8.96□□□□□ -0.97
SNRNP40-206ENST00000489853 CNKSR2Q8WXI2 1034 aa8.92□□□□□ -0.98
SNRNP40-206ENST00000489853 RNF216Q9NWF9 866 aaPredicted RBP8.86□□□□□ -0.99
SNRNP40-206ENST00000489853 POTEHQ6S545 545 aa8.85□□□□□ -0.99
SNRNP40-206ENST00000489853 CSRNP3Q8WYN3 585 aa8.83□□□□□ -1
SNRNP40-206ENST00000489853 RNF39Q9H2S5 420 aa8.82□□□□□ -1
SNRNP40-206ENST00000489853 SLC4A1APQ9BWU0 796 aaKnown RBP8.76□□□□□ -1.01
SNRNP40-206ENST00000489853 C1QBPQ07021 282 aaKnown RBP8.66□□□□□ -1.02
SNRNP40-206ENST00000489853 NCBP3Q53F19 620 aaKnown RBP8.65□□□□□ -1.02
SNRNP40-206ENST00000489853 DNAJC5BQ9UF47 199 aa8.63□□□□□ -1.03
SNRNP40-206ENST00000489853 NPM3O75607 178 aaKnown RBP8.59□□□□□ -1.03
SNRNP40-206ENST00000489853 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.52□□□□□ -1.045e-13■■■■■ 27.2
SNRNP40-206ENST00000489853 ZBTB22O15209 634 aa8.52□□□□□ -1.05
SNRNP40-206ENST00000489853 U3KPZ7 1027 aaPredicted RBP8.37□□□□□ -1.07
SNRNP40-206ENST00000489853 PELP1Q8IZL8 1130 aaKnown RBP8.31□□□□□ -1.08
SNRNP40-206ENST00000489853 SPINK5Q9NQ38 1064 aaPredicted RBP8.29□□□□□ -1.08
SNRNP40-206ENST00000489853 CAPN15O75808 1086 aa8.24□□□□□ -1.09
SNRNP40-206ENST00000489853 SLC4A2P04920 1241 aa8.24□□□□□ -1.09
SNRNP40-206ENST00000489853 DSG3P32926 999 aa8.24□□□□□ -1.09
SNRNP40-206ENST00000489853 RTN4Q9NQC3 1192 aaKnown RBP8.22□□□□□ -1.09
SNRNP40-206ENST00000489853 FOXD4L1Q9NU39 408 aa8.19□□□□□ -1.1
SNRNP40-206ENST00000489853 SLC24A1O60721 1099 aa8.18□□□□□ -1.1
SNRNP40-206ENST00000489853 MYT1Q01538 1121 aa8.12□□□□□ -1.11
SNRNP40-206ENST00000489853 NISCHQ9Y2I1 1504 aa8.11□□□□□ -1.11
SNRNP40-206ENST00000489853 TRHP20396 242 aaPredicted RBP8.09□□□□□ -1.11
SNRNP40-206ENST00000489853 HRCP23327 699 aa8.07□□□□□ -1.12
SNRNP40-206ENST00000489853 ABCB7O75027 752 aa8.07□□□□□ -1.12
SNRNP40-206ENST00000489853 ZNF219Q9P2Y4 722 aaPredicted RBP8.04□□□□□ -1.12
SNRNP40-206ENST00000489853 APLP2Q06481 763 aa8.03□□□□□ -1.12
SNRNP40-206ENST00000489853 AMER1Q5JTC6 1135 aaPredicted RBP8.03□□□□□ -1.12
SNRNP40-206ENST00000489853 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.02□□□□□ -1.13
SNRNP40-206ENST00000489853 HNRNPUL2Q1KMD3 747 aaKnown RBP8.02□□□□□ -1.13
SNRNP40-206ENST00000489853 SAMD1Q6SPF0 538 aaPredicted RBP7.99□□□□□ -1.13
SNRNP40-206ENST00000489853 FKBP8Q14318 412 aa7.94□□□□□ -1.14
SNRNP40-206ENST00000489853 MYCNP04198 464 aaPredicted RBP7.91□□□□□ -1.14
SNRNP40-206ENST00000489853 SP7Q8TDD2 431 aaPredicted RBP7.91□□□□□ -1.14
SNRNP40-206ENST00000489853 POLA2Q14181 598 aa7.86□□□□□ -1.15
SNRNP40-206ENST00000489853 RBM42Q9BTD8 480 aaKnown RBP7.8□□□□□ -1.16
SNRNP40-206ENST00000489853 ATF5Q9Y2D1 282 aaPredicted RBP7.8□□□□□ -1.16
SNRNP40-206ENST00000489853 PPARGC1BQ86YN6 1023 aaKnown RBP7.76□□□□□ -1.17
SNRNP40-206ENST00000489853 ATXN8OSP0DMR3 200 aa7.74□□□□□ -1.17
SNRNP40-206ENST00000489853 TTBK1Q5TCY1 1321 aaPredicted RBP7.72□□□□□ -1.17
SNRNP40-206ENST00000489853 CHRDL2Q6WN34 429 aa7.71□□□□□ -1.18
SNRNP40-206ENST00000489853 PCGF6Q9BYE7 350 aa7.7□□□□□ -1.18
SNRNP40-206ENST00000489853 ZBTB12Q9Y330 459 aaPredicted RBP7.64□□□□□ -1.19
SNRNP40-206ENST00000489853 AKT1S1Q96B36 256 aa7.63□□□□□ -1.19
SNRNP40-206ENST00000489853 OSCARQ8IYS5 282 aa7.62□□□□□ -1.19
SNRNP40-206ENST00000489853 PLSCR2Q9NRY7 297 aa7.58□□□□□ -1.2
SNRNP40-206ENST00000489853 ZEB1P37275 1124 aaPredicted RBP7.58□□□□□ -1.2
SNRNP40-206ENST00000489853 REM2Q8IYK8 340 aaPredicted RBP7.58□□□□□ -1.2
SNRNP40-206ENST00000489853 ABCC9O60706 1549 aa7.56□□□□□ -1.2
SNRNP40-206ENST00000489853 PIP4P2Q8N4L2 257 aa7.52□□□□□ -1.21
SNRNP40-206ENST00000489853 ACIN1Q9UKV3 1341 aaKnown RBP7.51□□□□□ -1.21
SNRNP40-206ENST00000489853 PITPNM1O00562 1244 aa7.51□□□□□ -1.21
SNRNP40-206ENST00000489853 DCAF1Q9Y4B6 1507 aa7.49□□□□□ -1.21
SNRNP40-206ENST00000489853 TRIM26Q12899 539 aaPredicted RBP7.47□□□□□ -1.21
SNRNP40-206ENST00000489853 MYO15BQ96JP2 1530 aa7.47□□□□□ -1.21
SNRNP40-206ENST00000489853 PLCB2Q00722 1185 aa7.46□□□□□ -1.21
SNRNP40-206ENST00000489853 FXR2P51116 673 aaKnown RBP eCLIP7.46□□□□□ -1.22
SNRNP40-206ENST00000489853 FBLN2P98095 1184 aa7.42□□□□□ -1.22
SNRNP40-206ENST00000489853 MKRN4PQ13434 485 aaPredicted RBP7.42□□□□□ -1.22
SNRNP40-206ENST00000489853 NEUROD1Q13562 356 aa7.42□□□□□ -1.22
SNRNP40-206ENST00000489853 GTF3C3Q9Y5Q9 886 aa7.42□□□□□ -1.22
SNRNP40-206ENST00000489853 SPDYE2BA6NHP3 402 aa7.42□□□□□ -1.22
SNRNP40-206ENST00000489853 SPDYE6P0CI01 402 aa7.42□□□□□ -1.22
SNRNP40-206ENST00000489853 PRKCSHP14314 528 aaPredicted RBP7.42□□□□□ -1.22
SNRNP40-206ENST00000489853 SPDYE2Q495Y8 402 aa7.42□□□□□ -1.22
SNRNP40-206ENST00000489853 CENPBP07199 599 aaPredicted RBP7.41□□□□□ -1.22
SNRNP40-206ENST00000489853 CCDC180Q9P1Z9 1646 aa7.41□□□□□ -1.22
SNRNP40-206ENST00000489853 HAP1P54257 671 aaPredicted RBP7.4□□□□□ -1.22
SNRNP40-206ENST00000489853 HAX1O00165 279 aa7.39□□□□□ -1.23
SNRNP40-206ENST00000489853 DCAF8L2P0C7V8 631 aa7.39□□□□□ -1.23
SNRNP40-206ENST00000489853 LHX8Q68G74 356 aa7.39□□□□□ -1.23
SNRNP40-206ENST00000489853 SPDYE4A6NLX3 237 aa7.38□□□□□ -1.23
SNRNP40-206ENST00000489853 SUPT5HO00267 1087 aaKnown RBP7.37□□□□□ -1.23
SNRNP40-206ENST00000489853 BCL11AQ9H165 835 aa7.37□□□□□ -1.23
SNRNP40-206ENST00000489853 VASPP50552 380 aaPredicted RBP7.35□□□□□ -1.23
SNRNP40-206ENST00000489853 EVX2Q03828 476 aa7.35□□□□□ -1.23
SNRNP40-206ENST00000489853 IFNLR1Q8IU57 520 aaPredicted RBP7.35□□□□□ -1.23
SNRNP40-206ENST00000489853 FBXO3Q9UK99 471 aa7.34□□□□□ -1.23
SNRNP40-206ENST00000489853 SSUH2Q9Y2M2 353 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms