RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 NISCHQ9Y2I1 1504 aa31.26■■■□□ 2.59
CPSF3-204ENST00000489403 CCDC180Q9P1Z9 1646 aa28.09■■■□□ 2.09
CPSF3-204ENST00000489403 ABCC9O60706 1549 aa28.08■■■□□ 2.08
CPSF3-204ENST00000489403 RB1CC1Q8TDY2 1594 aa26.72■■□□□ 1.87
CPSF3-204ENST00000489403 NACADO15069 1562 aa26.53■■□□□ 1.84
CPSF3-204ENST00000489403 DNAJC5BQ9UF47 199 aa26.34■■□□□ 1.81
CPSF3-204ENST00000489403 DCAF8L2P0C7V8 631 aa26.32■■□□□ 1.8
CPSF3-204ENST00000489403 UNC13AQ9UPW8 1703 aa26.17■■□□□ 1.78
CPSF3-204ENST00000489403 MYO15BQ96JP2 1530 aa26.17■■□□□ 1.78
CPSF3-204ENST00000489403 PABPN1Q86U42 306 aaKnown RBP eCLIP26.11■■□□□ 1.77
CPSF3-204ENST00000489403 BICRAQ9NZM4 1560 aa25.97■■□□□ 1.75
CPSF3-204ENST00000489403 ZCCHC6Q5VYS8 1495 aaKnown RBP25.92■■□□□ 1.74
CPSF3-204ENST00000489403 DCAF1Q9Y4B6 1507 aa25.83■■□□□ 1.72
CPSF3-204ENST00000489403 SHROOM4Q9ULL8 1493 aa25.6■■□□□ 1.69
CPSF3-204ENST00000489403 SCRIBQ14160 1630 aa25.59■■□□□ 1.69
CPSF3-204ENST00000489403 CC2D2AQ9P2K1 1620 aa25.38■■□□□ 1.65
CPSF3-204ENST00000489403 EIF4G1Q04637 1599 aaKnown RBP25.33■■□□□ 1.65
CPSF3-204ENST00000489403 CECR2Q9BXF3 1484 aa25.29■■□□□ 1.64
CPSF3-204ENST00000489403 NCAPD3P42695 1498 aa24.48■■□□□ 1.51
CPSF3-204ENST00000489403 ATAD2BQ9ULI0 1458 aa24.42■■□□□ 1.5
CPSF3-204ENST00000489403 SMARCA4P51532 1647 aa24.41■■□□□ 1.5
CPSF3-204ENST00000489403 SMARCA2P51531 1590 aa24.34■■□□□ 1.49
CPSF3-204ENST00000489403 HMGXB3Q12766 1538 aa24.33■■□□□ 1.49
CPSF3-204ENST00000489403 BAZ1AQ9NRL2 1556 aaPredicted RBP24.27■■□□□ 1.48
CPSF3-204ENST00000489403 ERCC6Q03468 1493 aa24.23■■□□□ 1.47
CPSF3-204ENST00000489403 CUX2O14529 1486 aa24.21■■□□□ 1.47
CPSF3-204ENST00000489403 DNAJC5Q9H3Z4 198 aa24.18■■□□□ 1.46
CPSF3-204ENST00000489403 BAZ1BQ9UIG0 1483 aaKnown RBP24.18■■□□□ 1.46
CPSF3-204ENST00000489403 PEG3Q9GZU2 1588 aa24.17■■□□□ 1.46
CPSF3-204ENST00000489403 NESP48681 1621 aa24.13■■□□□ 1.45
CPSF3-204ENST00000489403 MROH2BQ7Z745 1585 aa24.1■■□□□ 1.45
CPSF3-204ENST00000489403 LAMC3Q9Y6N6 1575 aa23.95■■□□□ 1.43
CPSF3-204ENST00000489403 THOC2Q8NI27 1593 aaKnown RBP23.92■■□□□ 1.42
CPSF3-204ENST00000489403 KIF21AQ7Z4S6 1674 aa23.84■■□□□ 1.41
CPSF3-204ENST00000489403 WIZO95785 1651 aa23.83■■□□□ 1.4
CPSF3-204ENST00000489403 PDS5BQ9NTI5 1447 aa23.78■■□□□ 1.4
CPSF3-204ENST00000489403 CADPSQ9ULU8 1353 aa23.73■■□□□ 1.39
CPSF3-204ENST00000489403 MRC2Q9UBG0 1479 aa23.61■■□□□ 1.37
CPSF3-204ENST00000489403 RSF1Q96T23 1441 aaPredicted RBP23.58■■□□□ 1.36
CPSF3-204ENST00000489403 WDR62O43379 1518 aa23.57■■□□□ 1.36
CPSF3-204ENST00000489403 CEP164Q9UPV0 1460 aa23.51■■□□□ 1.35
CPSF3-204ENST00000489403 TOP2AP11388 1531 aaKnown RBP23.51■■□□□ 1.35
CPSF3-204ENST00000489403 CFTRP13569 1480 aa23.48■■□□□ 1.35
CPSF3-204ENST00000489403 FANCD2Q9BXW9 1451 aa23.48■■□□□ 1.35
CPSF3-204ENST00000489403 URB2Q14146 1524 aaKnown RBP23.3■■□□□ 1.32
CPSF3-204ENST00000489403 PRDM2Q13029 1718 aa23.28■■□□□ 1.32
CPSF3-204ENST00000489403 CCDC88BA6NC98 1476 aa23.22■■□□□ 1.31
CPSF3-204ENST00000489403 TRIM41Q8WV44 630 aa23.11■■□□□ 1.29
CPSF3-204ENST00000489403 OSCARQ8IYS5 282 aa23.05■■□□□ 1.28
CPSF3-204ENST00000489403 TOPBP1Q92547 1522 aa23.04■■□□□ 1.28
CPSF3-204ENST00000489403 IFT140Q96RY7 1462 aa23.04■■□□□ 1.28
CPSF3-204ENST00000489403 ZNF608Q9ULD9 1512 aaPredicted RBP23.02■■□□□ 1.28
CPSF3-204ENST00000489403 ABCC8Q09428 1581 aa22.96■■□□□ 1.27
CPSF3-204ENST00000489403 DNMBPQ6XZF7 1577 aa22.96■■□□□ 1.27
CPSF3-204ENST00000489403 EIF4G3O43432 1585 aaKnown RBP22.91■■□□□ 1.26
CPSF3-204ENST00000489403 TARBP1Q13395 1621 aaKnown RBP22.85■■□□□ 1.25
CPSF3-204ENST00000489403 RIMBP3CA6NJZ7 1639 aa22.83■■□□□ 1.25
CPSF3-204ENST00000489403 RIMBP3BA6NNM3 1639 aa22.83■■□□□ 1.25
CPSF3-204ENST00000489403 RIMBP3Q9UFD9 1639 aa22.83■■□□□ 1.25
CPSF3-204ENST00000489403 POLA1P09884 1462 aaPredicted RBP22.8■■□□□ 1.24
CPSF3-204ENST00000489403 AQRO60306 1485 aaKnown RBP eCLIP22.79■■□□□ 1.24
CPSF3-204ENST00000489403 CHD1O14646 1710 aa22.74■■□□□ 1.23
CPSF3-204ENST00000489403 ARHGEF11O15085 1522 aa22.74■■□□□ 1.23
CPSF3-204ENST00000489403 RAD54L2Q9Y4B4 1467 aa22.72■■□□□ 1.23
CPSF3-204ENST00000489403 SOGA1O94964 1423 aa22.67■■□□□ 1.22
CPSF3-204ENST00000489403 FGD5Q6ZNL6 1462 aa22.66■■□□□ 1.22
CPSF3-204ENST00000489403 CUX1P39880 1505 aa22.64■■□□□ 1.21
CPSF3-204ENST00000489403 TDRD9Q8NDG6 1382 aaKnown RBP22.63■■□□□ 1.21
CPSF3-204ENST00000489403 WDR97A6NE52 1622 aa22.62■■□□□ 1.21
CPSF3-204ENST00000489403 FBLN2P98095 1184 aa22.6■■□□□ 1.21
CPSF3-204ENST00000489403 SNAPC4Q5SXM2 1469 aa22.58■■□□□ 1.2
CPSF3-204ENST00000489403 ARAP1Q96P48 1450 aa22.53■■□□□ 1.2
CPSF3-204ENST00000489403 CYB5RLQ6IPT4 315 aa22.52■■□□□ 1.2
CPSF3-204ENST00000489403 MAGI1Q96QZ7 1491 aaPredicted RBP22.5■■□□□ 1.19
CPSF3-204ENST00000489403 GRIN2BQ13224 1484 aa22.49■■□□□ 1.19
CPSF3-204ENST00000489403 CLASP1Q7Z460 1538 aa22.47■■□□□ 1.19
CPSF3-204ENST00000489403 SUPT5HO00267 1087 aaKnown RBP22.47■■□□□ 1.19
CPSF3-204ENST00000489403 SYNJ1O43426 1573 aa22.45■■□□□ 1.18
CPSF3-204ENST00000489403 PBRM1Q86U86 1689 aa22.45■■□□□ 1.18
CPSF3-204ENST00000489403 CHMP7Q8WUX9 453 aaPredicted RBP22.43■■□□□ 1.18
CPSF3-204ENST00000489403 SYNJ2O15056 1496 aa22.42■■□□□ 1.18
CPSF3-204ENST00000489403 GAPVD1Q14C86 1478 aa22.41■■□□□ 1.18
CPSF3-204ENST00000489403 ABCA10Q8WWZ4 1543 aa22.4■■□□□ 1.18
CPSF3-204ENST00000489403 ABCA5Q8WWZ7 1642 aa22.39■■□□□ 1.18
CPSF3-204ENST00000489403 BIVM-ERCC5R4GMW8 1640 aa22.29■■□□□ 1.16
CPSF3-204ENST00000489403 WRNQ14191 1432 aaPredicted RBP eCLIP22.28■■□□□ 1.16
CPSF3-204ENST00000489403 TOP2BQ02880 1626 aa22.28■■□□□ 1.16
CPSF3-204ENST00000489403 TRHP20396 242 aaPredicted RBP22.27■■□□□ 1.16
CPSF3-204ENST00000489403 ADAMTS12P58397 1594 aa22.22■■□□□ 1.15
CPSF3-204ENST00000489403 GRIN2AQ12879 1464 aa22.21■■□□□ 1.15
CPSF3-204ENST00000489403 CEP170Q5SW79 1584 aa22.16■■□□□ 1.14
CPSF3-204ENST00000489403 NUP160Q12769 1436 aa22.14■■□□□ 1.14
CPSF3-204ENST00000489403 ERCC6L2Q5T890 1561 aa22.13■■□□□ 1.13
CPSF3-204ENST00000489403 FHAD1B1AJZ9 1412 aa22.13■■□□□ 1.13
CPSF3-204ENST00000489403 ERICH3Q5RHP9 1530 aa22.11■■□□□ 1.13
CPSF3-204ENST00000489403 SHROOM2Q13796 1616 aa22.07■■□□□ 1.12
CPSF3-204ENST00000489403 RUSC2Q8N2Y8 1516 aa21.92■■□□□ 1.1
CPSF3-204ENST00000489403 PRG4Q92954 1404 aaPredicted RBP21.9■■□□□ 1.1
CPSF3-204ENST00000489403 JPH4Q96JJ6 628 aa21.87■■□□□ 1.09
CPSF3-204ENST00000489403 CUL7Q14999 1698 aa21.81■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms