RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 AEBP2Q6ZN18 517 aaPredicted RBP22.4■■□□□ 1.18
SNRNP40-202ENST00000373720 CHIC1Q5VXU3 224 aa21.02■□□□□ 0.96
SNRNP40-202ENST00000373720 SENP3Q9H4L4 574 aaPredicted RBP19.22■□□□□ 0.67
SNRNP40-202ENST00000373720 PHF23Q9BUL5 403 aaPredicted RBP18.94■□□□□ 0.62
SNRNP40-202ENST00000373720 NISCHQ9Y2I1 1504 aa18.92■□□□□ 0.62
SNRNP40-202ENST00000373720 FOXD1Q16676 465 aa17.92■□□□□ 0.46
SNRNP40-202ENST00000373720 POTEDQ86YR6 584 aa16.97■□□□□ 0.31
SNRNP40-202ENST00000373720 MSH5O43196 834 aa16.91■□□□□ 0.3
SNRNP40-202ENST00000373720 PIAS4Q8N2W9 510 aaPredicted RBP16.72■□□□□ 0.27
SNRNP40-202ENST00000373720 PLPPR3Q6T4P5 718 aa16.71■□□□□ 0.27
SNRNP40-202ENST00000373720 PPP6R1Q9UPN7 881 aa16.53■□□□□ 0.24
SNRNP40-202ENST00000373720 ADRA2BP18089 450 aa16.5■□□□□ 0.23
SNRNP40-202ENST00000373720 CCDC180Q9P1Z9 1646 aa16.47■□□□□ 0.23
SNRNP40-202ENST00000373720 ZCCHC6Q5VYS8 1495 aaKnown RBP15.95■□□□□ 0.14
SNRNP40-202ENST00000373720 DCAF1Q9Y4B6 1507 aa15.87■□□□□ 0.13
SNRNP40-202ENST00000373720 MYO15BQ96JP2 1530 aa15.63■□□□□ 0.09
SNRNP40-202ENST00000373720 NACADO15069 1562 aa15.3■□□□□ 0.04
SNRNP40-202ENST00000373720 DCAF8L2P0C7V8 631 aa15.28■□□□□ 0.04
SNRNP40-202ENST00000373720 SHROOM4Q9ULL8 1493 aa15.27■□□□□ 0.03
SNRNP40-202ENST00000373720 MAPK8IP2Q13387 824 aaPredicted RBP15.23■□□□□ 0.03
SNRNP40-202ENST00000373720 DMRT2Q9Y5R5 561 aa15.17■□□□□ 0.02
SNRNP40-202ENST00000373720 SCAF1Q9H7N4 1312 aaKnown RBP15.17■□□□□ 0.02
SNRNP40-202ENST00000373720 RB1CC1Q8TDY2 1594 aa15.04■□□□□ -0
SNRNP40-202ENST00000373720 ABCC9O60706 1549 aa15□□□□□ -0.01
SNRNP40-202ENST00000373720 SUPT5HO00267 1087 aaKnown RBP14.95□□□□□ -0.02
SNRNP40-202ENST00000373720 SCRIBQ14160 1630 aa14.88□□□□□ -0.03
SNRNP40-202ENST00000373720 CACNB1Q02641 598 aaPredicted RBP14.74□□□□□ -0.05
SNRNP40-202ENST00000373720 RSF1Q96T23 1441 aaPredicted RBP14.74□□□□□ -0.05
SNRNP40-202ENST00000373720 DCAF8L1A6NGE4 600 aa14.68□□□□□ -0.06
SNRNP40-202ENST00000373720 BAZ1AQ9NRL2 1556 aaPredicted RBP14.66□□□□□ -0.06
SNRNP40-202ENST00000373720 PPP4R3CPQ6ZMV5 832 aa14.61□□□□□ -0.07
SNRNP40-202ENST00000373720 UNC13AQ9UPW8 1703 aa14.49□□□□□ -0.09
SNRNP40-202ENST00000373720 MROH2BQ7Z745 1585 aa14.48□□□□□ -0.09
SNRNP40-202ENST00000373720 HOXD11P31277 338 aaPredicted RBP14.48□□□□□ -0.09
SNRNP40-202ENST00000373720 CECR2Q9BXF3 1484 aa14.48□□□□□ -0.09
SNRNP40-202ENST00000373720 SMARCA4P51532 1647 aa14.43□□□□□ -0.1
SNRNP40-202ENST00000373720 PEG3Q9GZU2 1588 aa14.4□□□□□ -0.1
SNRNP40-202ENST00000373720 BICRAQ9NZM4 1560 aa14.4□□□□□ -0.1
SNRNP40-202ENST00000373720 CNKSR2Q8WXI2 1034 aa14.4□□□□□ -0.1
SNRNP40-202ENST00000373720 TOP2AP11388 1531 aaKnown RBP14.39□□□□□ -0.11
SNRNP40-202ENST00000373720 RNF39Q9H2S5 420 aa14.37□□□□□ -0.11
SNRNP40-202ENST00000373720 WIZO95785 1651 aa14.33□□□□□ -0.11
SNRNP40-202ENST00000373720 RNF216Q9NWF9 866 aaPredicted RBP14.32□□□□□ -0.12
SNRNP40-202ENST00000373720 SMARCA2P51531 1590 aa14.27□□□□□ -0.12
SNRNP40-202ENST00000373720 TRIM41Q8WV44 630 aa14.23□□□□□ -0.13
SNRNP40-202ENST00000373720 C1QBPQ07021 282 aaKnown RBP14.18□□□□□ -0.14
SNRNP40-202ENST00000373720 CCDC88BA6NC98 1476 aa14.17□□□□□ -0.14
SNRNP40-202ENST00000373720 ATAD2BQ9ULI0 1458 aa14.15□□□□□ -0.14
SNRNP40-202ENST00000373720 EIF4G1Q04637 1599 aaKnown RBP14.14□□□□□ -0.15
SNRNP40-202ENST00000373720 PABPN1Q86U42 306 aaKnown RBP eCLIP14.14□□□□□ -0.15
SNRNP40-202ENST00000373720 BAZ1BQ9UIG0 1483 aaKnown RBP14.1□□□□□ -0.15
SNRNP40-202ENST00000373720 HMGXB3Q12766 1538 aa14.1□□□□□ -0.15
SNRNP40-202ENST00000373720 NCAPD3P42695 1498 aa14.09□□□□□ -0.15
SNRNP40-202ENST00000373720 EEA1Q15075 1411 aa14.08□□□□□ -0.15
SNRNP40-202ENST00000373720 DNAJC5BQ9UF47 199 aa14.03□□□□□ -0.16
SNRNP40-202ENST00000373720 NCBP3Q53F19 620 aaKnown RBP14.01□□□□□ -0.17
SNRNP40-202ENST00000373720 WRNQ14191 1432 aaPredicted RBP eCLIP13.9□□□□□ -0.18
SNRNP40-202ENST00000373720 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.9□□□□□ -0.185e-13■■■■■ 27.2
SNRNP40-202ENST00000373720 LOC105371045A0A1W2PR82 267 aa13.86□□□□□ -0.19
SNRNP40-202ENST00000373720 CFTRP13569 1480 aa13.81□□□□□ -0.2
SNRNP40-202ENST00000373720 ABCC8Q09428 1581 aa13.79□□□□□ -0.2
SNRNP40-202ENST00000373720 TRIM26Q12899 539 aaPredicted RBP13.79□□□□□ -0.2
SNRNP40-202ENST00000373720 CSRNP3Q8WYN3 585 aa13.79□□□□□ -0.2
SNRNP40-202ENST00000373720 TOP2BQ02880 1626 aa13.77□□□□□ -0.21
SNRNP40-202ENST00000373720 TNIKQ9UKE5 1360 aa13.77□□□□□ -0.21
SNRNP40-202ENST00000373720 BIVM-ERCC5R4GMW8 1640 aa13.75□□□□□ -0.21
SNRNP40-202ENST00000373720 NPM3O75607 178 aaKnown RBP13.73□□□□□ -0.21
SNRNP40-202ENST00000373720 CEP164Q9UPV0 1460 aa13.73□□□□□ -0.21
SNRNP40-202ENST00000373720 PRDM2Q13029 1718 aa13.73□□□□□ -0.21
SNRNP40-202ENST00000373720 GOLGA3Q08378 1498 aa13.72□□□□□ -0.21
SNRNP40-202ENST00000373720 KIF21BO75037 1637 aa13.71□□□□□ -0.22
SNRNP40-202ENST00000373720 CADPSQ9ULU8 1353 aa13.71□□□□□ -0.22
SNRNP40-202ENST00000373720 FAM9AQ8IZU1 332 aaPredicted RBP13.7□□□□□ -0.22
SNRNP40-202ENST00000373720 SYNJ1O43426 1573 aa13.69□□□□□ -0.22
SNRNP40-202ENST00000373720 SOGA1O94964 1423 aa13.67□□□□□ -0.22
SNRNP40-202ENST00000373720 CC2D2AQ9P2K1 1620 aa13.66□□□□□ -0.22
SNRNP40-202ENST00000373720 ERICH3Q5RHP9 1530 aa13.63□□□□□ -0.23
SNRNP40-202ENST00000373720 PCGF6Q9BYE7 350 aa13.62□□□□□ -0.23
SNRNP40-202ENST00000373720 HRCP23327 699 aa13.6□□□□□ -0.23
SNRNP40-202ENST00000373720 ZEB1P37275 1124 aaPredicted RBP13.6□□□□□ -0.23
SNRNP40-202ENST00000373720 KIF27Q86VH2 1401 aa13.6□□□□□ -0.23
SNRNP40-202ENST00000373720 CEP162Q5TB80 1403 aa13.59□□□□□ -0.23
SNRNP40-202ENST00000373720 LAMC3Q9Y6N6 1575 aa13.56□□□□□ -0.24
SNRNP40-202ENST00000373720 UBTFP17480 764 aaKnown RBP13.55□□□□□ -0.24
SNRNP40-202ENST00000373720 CUX1P39880 1505 aa13.54□□□□□ -0.24
SNRNP40-202ENST00000373720 PRXQ9BXM0 1461 aa13.54□□□□□ -0.24
SNRNP40-202ENST00000373720 RUSC2Q8N2Y8 1516 aa13.51□□□□□ -0.25
SNRNP40-202ENST00000373720 FANCD2Q9BXW9 1451 aa13.48□□□□□ -0.25
SNRNP40-202ENST00000373720 U3KPZ7 1027 aaPredicted RBP13.48□□□□□ -0.25
SNRNP40-202ENST00000373720 PDS5BQ9NTI5 1447 aa13.47□□□□□ -0.25
SNRNP40-202ENST00000373720 DNMBPQ6XZF7 1577 aa13.46□□□□□ -0.25
SNRNP40-202ENST00000373720 CAPN15O75808 1086 aa13.46□□□□□ -0.25
SNRNP40-202ENST00000373720 CLIP1P30622 1438 aa13.46□□□□□ -0.26
SNRNP40-202ENST00000373720 VPS8Q8N3P4 1428 aa13.43□□□□□ -0.26
SNRNP40-202ENST00000373720 RAPGEF2Q9Y4G8 1499 aa13.42□□□□□ -0.26
SNRNP40-202ENST00000373720 SPINK5Q9NQ38 1064 aaPredicted RBP13.4□□□□□ -0.26
SNRNP40-202ENST00000373720 ABCA10Q8WWZ4 1543 aa13.39□□□□□ -0.27
SNRNP40-202ENST00000373720 APLP2Q06481 763 aa13.39□□□□□ -0.27
SNRNP40-202ENST00000373720 FGD5Q6ZNL6 1462 aa13.38□□□□□ -0.27
SNRNP40-202ENST00000373720 IGF1RP08069 1367 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 140.1 ms