RNA–Protein interactions for RNA: ENST00000491106.1

SNRNP40-207, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 459 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-207ENST00000491106 AEBP2Q6ZN18 517 aaPredicted RBP10.4□□□□□ -0.74
SNRNP40-207ENST00000491106 CHIC1Q5VXU3 224 aa10.04□□□□□ -0.8
SNRNP40-207ENST00000491106 SENP3Q9H4L4 574 aaPredicted RBP8.94□□□□□ -0.98
SNRNP40-207ENST00000491106 PHF23Q9BUL5 403 aaPredicted RBP8.87□□□□□ -0.99
SNRNP40-207ENST00000491106 FOXD1Q16676 465 aa8.29□□□□□ -1.08
SNRNP40-207ENST00000491106 PLPPR3Q6T4P5 718 aa8.16□□□□□ -1.1
SNRNP40-207ENST00000491106 ADRA2BP18089 450 aa7.9□□□□□ -1.14
SNRNP40-207ENST00000491106 PIAS4Q8N2W9 510 aaPredicted RBP7.87□□□□□ -1.15
SNRNP40-207ENST00000491106 PPP6R1Q9UPN7 881 aa7.84□□□□□ -1.15
SNRNP40-207ENST00000491106 MSH5O43196 834 aa7.75□□□□□ -1.17
SNRNP40-207ENST00000491106 SCAF1Q9H7N4 1312 aaKnown RBP7.3□□□□□ -1.24
SNRNP40-207ENST00000491106 POTEDQ86YR6 584 aa7.3□□□□□ -1.24
SNRNP40-207ENST00000491106 MAPK8IP2Q13387 824 aaPredicted RBP7.21□□□□□ -1.26
SNRNP40-207ENST00000491106 PPP4R3CPQ6ZMV5 832 aa7.18□□□□□ -1.26
SNRNP40-207ENST00000491106 DMRT2Q9Y5R5 561 aa7.06□□□□□ -1.28
SNRNP40-207ENST00000491106 DCAF8L1A6NGE4 600 aa7.03□□□□□ -1.28
SNRNP40-207ENST00000491106 NCBP3Q53F19 620 aaKnown RBP7.02□□□□□ -1.29
SNRNP40-207ENST00000491106 CNKSR2Q8WXI2 1034 aa6.99□□□□□ -1.29
SNRNP40-207ENST00000491106 RNF216Q9NWF9 866 aaPredicted RBP6.87□□□□□ -1.31
SNRNP40-207ENST00000491106 HOXD11P31277 338 aaPredicted RBP6.82□□□□□ -1.32
SNRNP40-207ENST00000491106 KCNA4P22459 653 aa6.81□□□□□ -1.32
SNRNP40-207ENST00000491106 NPM3O75607 178 aaKnown RBP6.8□□□□□ -1.32
SNRNP40-207ENST00000491106 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.71□□□□□ -1.345e-13■■■■■ 27.2
SNRNP40-207ENST00000491106 CACNB1Q02641 598 aaPredicted RBP6.67□□□□□ -1.34
SNRNP40-207ENST00000491106 RNF39Q9H2S5 420 aa6.56□□□□□ -1.36
SNRNP40-207ENST00000491106 C1QBPQ07021 282 aaKnown RBP6.52□□□□□ -1.37
SNRNP40-207ENST00000491106 SLC4A1APQ9BWU0 796 aaKnown RBP6.52□□□□□ -1.37
SNRNP40-207ENST00000491106 DNAJC5BQ9UF47 199 aa6.5□□□□□ -1.37
SNRNP40-207ENST00000491106 CAPN15O75808 1086 aa6.44□□□□□ -1.38
SNRNP40-207ENST00000491106 U3KPZ7 1027 aaPredicted RBP6.42□□□□□ -1.38
SNRNP40-207ENST00000491106 SLC4A2P04920 1241 aa6.41□□□□□ -1.38
SNRNP40-207ENST00000491106 APLP2Q06481 763 aa6.4□□□□□ -1.38
SNRNP40-207ENST00000491106 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.39□□□□□ -1.39
SNRNP40-207ENST00000491106 HNRNPUL2Q1KMD3 747 aaKnown RBP6.39□□□□□ -1.39
SNRNP40-207ENST00000491106 TRHP20396 242 aaPredicted RBP6.38□□□□□ -1.39
SNRNP40-207ENST00000491106 SAMD1Q6SPF0 538 aaPredicted RBP6.34□□□□□ -1.39
SNRNP40-207ENST00000491106 SPINK5Q9NQ38 1064 aaPredicted RBP6.34□□□□□ -1.39
SNRNP40-207ENST00000491106 MYCNP04198 464 aaPredicted RBP6.32□□□□□ -1.4
SNRNP40-207ENST00000491106 FOXD4L1Q9NU39 408 aa6.32□□□□□ -1.4
SNRNP40-207ENST00000491106 ZNF219Q9P2Y4 722 aaPredicted RBP6.28□□□□□ -1.4
SNRNP40-207ENST00000491106 ABCB7O75027 752 aa6.26□□□□□ -1.41
SNRNP40-207ENST00000491106 EHMT2Q96KQ7 1210 aa6.22□□□□□ -1.41
SNRNP40-207ENST00000491106 DSG3P32926 999 aa6.21□□□□□ -1.42
SNRNP40-207ENST00000491106 ZBTB22O15209 634 aa6.18□□□□□ -1.42
SNRNP40-207ENST00000491106 POLA2Q14181 598 aa6.18□□□□□ -1.42
SNRNP40-207ENST00000491106 ATF5Q9Y2D1 282 aaPredicted RBP6.12□□□□□ -1.43
SNRNP40-207ENST00000491106 ATXN8OSP0DMR3 200 aa6.08□□□□□ -1.44
SNRNP40-207ENST00000491106 CSRNP3Q8WYN3 585 aa6.08□□□□□ -1.44
SNRNP40-207ENST00000491106 ZBTB12Q9Y330 459 aaPredicted RBP6.03□□□□□ -1.44
SNRNP40-207ENST00000491106 FBLN2P98095 1184 aa6.02□□□□□ -1.45
SNRNP40-207ENST00000491106 RBM42Q9BTD8 480 aaKnown RBP5.99□□□□□ -1.45
SNRNP40-207ENST00000491106 OSCARQ8IYS5 282 aa5.92□□□□□ -1.46
SNRNP40-207ENST00000491106 ZNF692Q9BU19 519 aaPredicted RBP5.88□□□□□ -1.47
SNRNP40-207ENST00000491106 AKT1S1Q96B36 256 aa5.86□□□□□ -1.47
SNRNP40-207ENST00000491106 CLEC11AQ9Y240 323 aa5.84□□□□□ -1.47
SNRNP40-207ENST00000491106 SPDYE2BA6NHP3 402 aa5.82□□□□□ -1.48
SNRNP40-207ENST00000491106 SPDYE6P0CI01 402 aa5.82□□□□□ -1.48
SNRNP40-207ENST00000491106 SPDYE2Q495Y8 402 aa5.82□□□□□ -1.48
SNRNP40-207ENST00000491106 MKRN4PQ13434 485 aaPredicted RBP5.81□□□□□ -1.48
SNRNP40-207ENST00000491106 REM2Q8IYK8 340 aaPredicted RBP5.81□□□□□ -1.48
SNRNP40-207ENST00000491106 CHRDL2Q6WN34 429 aa5.8□□□□□ -1.48
SNRNP40-207ENST00000491106 POTEHQ6S545 545 aa5.78□□□□□ -1.48
SNRNP40-207ENST00000491106 PABPN1Q86U42 306 aaKnown RBP eCLIP5.76□□□□□ -1.49
SNRNP40-207ENST00000491106 SPDYE1Q8NFV5 336 aaPredicted RBP5.74□□□□□ -1.49
SNRNP40-207ENST00000491106 SPDYE4A6NLX3 237 aa5.73□□□□□ -1.49
SNRNP40-207ENST00000491106 PITPNM1O00562 1244 aa5.72□□□□□ -1.49
SNRNP40-207ENST00000491106 PRR29P0C7W0 189 aa5.72□□□□□ -1.49
SNRNP40-207ENST00000491106 SSUH2Q9Y2M2 353 aa5.68□□□□□ -1.5
SNRNP40-207ENST00000491106 HAX1O00165 279 aa5.66□□□□□ -1.5
SNRNP40-207ENST00000491106 PIP4P2Q8N4L2 257 aa5.66□□□□□ -1.5
SNRNP40-207ENST00000491106 PRKAR2AP13861 404 aaKnown RBP5.65□□□□□ -1.5
SNRNP40-207ENST00000491106 STAG3Q9UJ98 1225 aa5.64□□□□□ -1.51
SNRNP40-207ENST00000491106 CHADLQ6NUI6 762 aa5.62□□□□□ -1.51
SNRNP40-207ENST00000491106 FKBP8Q14318 412 aa5.61□□□□□ -1.51
SNRNP40-207ENST00000491106 FXR2P51116 673 aaKnown RBP eCLIP5.6□□□□□ -1.51
SNRNP40-207ENST00000491106 PLEKHG5O94827 1062 aa5.58□□□□□ -1.52
SNRNP40-207ENST00000491106 MIER1Q8N108 512 aa5.56□□□□□ -1.52
SNRNP40-207ENST00000491106 PLCD3Q8N3E9 789 aa5.53□□□□□ -1.52
SNRNP40-207ENST00000491106 FARP1Q9Y4F1 1045 aaPredicted RBP5.52□□□□□ -1.53
SNRNP40-207ENST00000491106 PAK3O75914 559 aaPredicted RBP5.5□□□□□ -1.53
SNRNP40-207ENST00000491106 NPM1P06748 294 aaKnown RBP eCLIP5.5□□□□□ -1.53
SNRNP40-207ENST00000491106 CD44P16070 742 aaKnown RBP5.47□□□□□ -1.53
SNRNP40-207ENST00000491106 SP7Q8TDD2 431 aaPredicted RBP5.47□□□□□ -1.53
SNRNP40-207ENST00000491106 CREBZFQ9NS37 354 aa5.47□□□□□ -1.53
SNRNP40-207ENST00000491106 FBXO3Q9UK99 471 aa5.47□□□□□ -1.53
SNRNP40-207ENST00000491106 KLHL34Q8N239 644 aa5.46□□□□□ -1.54
SNRNP40-207ENST00000491106 ZRANB1Q9UGI0 708 aa5.45□□□□□ -1.54
SNRNP40-207ENST00000491106 EVX2Q03828 476 aa5.44□□□□□ -1.54
SNRNP40-207ENST00000491106 TSPYL2Q9H2G4 693 aaPredicted RBP5.43□□□□□ -1.54
SNRNP40-207ENST00000491106 C19orf67A6NJJ6 358 aa5.42□□□□□ -1.54
SNRNP40-207ENST00000491106 ZBTB47Q9UFB7 747 aaPredicted RBP5.42□□□□□ -1.54
SNRNP40-207ENST00000491106 PROM2Q8N271 834 aa5.4□□□□□ -1.54
SNRNP40-207ENST00000491106 GABBR2O75899 941 aa5.38□□□□□ -1.55
SNRNP40-207ENST00000491106 DCBLD2Q96PD2 775 aa5.38□□□□□ -1.55
SNRNP40-207ENST00000491106 DCAF8Q5TAQ9 597 aa5.37□□□□□ -1.55
SNRNP40-207ENST00000491106 PHF12Q96QT6 1004 aa5.34□□□□□ -1.55
SNRNP40-207ENST00000491106 VASPP50552 380 aaPredicted RBP5.33□□□□□ -1.56
SNRNP40-207ENST00000491106 CLCN6P51797 869 aa5.33□□□□□ -1.56
SNRNP40-207ENST00000491106 MNX1P50219 401 aaPredicted RBP5.32□□□□□ -1.56
SNRNP40-207ENST00000491106 FAM212AQ96EL1 285 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms