RNA–Protein interactions for RNA: ENST00000263694.8

SNRNP40-201, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP40, Length 1,597 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-201ENST00000263694 NISCHQ9Y2I1 1504 aa22.69■■□□□ 1.22
SNRNP40-201ENST00000263694 AEBP2Q6ZN18 517 aaPredicted RBP22.6■■□□□ 1.21
SNRNP40-201ENST00000263694 CHIC1Q5VXU3 224 aa21.25■□□□□ 0.99
SNRNP40-201ENST00000263694 CCDC180Q9P1Z9 1646 aa19.88■□□□□ 0.77
SNRNP40-201ENST00000263694 SENP3Q9H4L4 574 aaPredicted RBP19.47■□□□□ 0.71
SNRNP40-201ENST00000263694 ABCC9O60706 1549 aa19.16■□□□□ 0.66
SNRNP40-201ENST00000263694 PHF23Q9BUL5 403 aaPredicted RBP19.09■□□□□ 0.65
SNRNP40-201ENST00000263694 ZCCHC6Q5VYS8 1495 aaKnown RBP18.98■□□□□ 0.63
SNRNP40-201ENST00000263694 DCAF8L2P0C7V8 631 aa18.93■□□□□ 0.62
SNRNP40-201ENST00000263694 DCAF1Q9Y4B6 1507 aa18.69■□□□□ 0.58
SNRNP40-201ENST00000263694 NACADO15069 1562 aa18.59■□□□□ 0.57
SNRNP40-201ENST00000263694 MYO15BQ96JP2 1530 aa18.57■□□□□ 0.56
SNRNP40-201ENST00000263694 RB1CC1Q8TDY2 1594 aa18.51■□□□□ 0.55
SNRNP40-201ENST00000263694 SHROOM4Q9ULL8 1493 aa18.4■□□□□ 0.54
SNRNP40-201ENST00000263694 SCRIBQ14160 1630 aa18.32■□□□□ 0.52
SNRNP40-201ENST00000263694 UNC13AQ9UPW8 1703 aa18.2■□□□□ 0.5
SNRNP40-201ENST00000263694 FOXD1Q16676 465 aa18.12■□□□□ 0.49
SNRNP40-201ENST00000263694 PABPN1Q86U42 306 aaKnown RBP eCLIP18.04■□□□□ 0.48
SNRNP40-201ENST00000263694 BICRAQ9NZM4 1560 aa18.01■□□□□ 0.47
SNRNP40-201ENST00000263694 CECR2Q9BXF3 1484 aa17.71■□□□□ 0.43
SNRNP40-201ENST00000263694 MROH2BQ7Z745 1585 aa17.55■□□□□ 0.4
SNRNP40-201ENST00000263694 SUPT5HO00267 1087 aaKnown RBP17.54■□□□□ 0.4
SNRNP40-201ENST00000263694 BAZ1AQ9NRL2 1556 aaPredicted RBP17.52■□□□□ 0.39
SNRNP40-201ENST00000263694 SMARCA4P51532 1647 aa17.51■□□□□ 0.39
SNRNP40-201ENST00000263694 RSF1Q96T23 1441 aaPredicted RBP17.5■□□□□ 0.39
SNRNP40-201ENST00000263694 POTEDQ86YR6 584 aa17.49■□□□□ 0.39
SNRNP40-201ENST00000263694 EIF4G1Q04637 1599 aaKnown RBP17.47■□□□□ 0.39
SNRNP40-201ENST00000263694 WIZO95785 1651 aa17.41■□□□□ 0.38
SNRNP40-201ENST00000263694 CC2D2AQ9P2K1 1620 aa17.31■□□□□ 0.36
SNRNP40-201ENST00000263694 ATAD2BQ9ULI0 1458 aa17.29■□□□□ 0.36
SNRNP40-201ENST00000263694 PEG3Q9GZU2 1588 aa17.26■□□□□ 0.35
SNRNP40-201ENST00000263694 SMARCA2P51531 1590 aa17.24■□□□□ 0.35
SNRNP40-201ENST00000263694 MSH5O43196 834 aa17.23■□□□□ 0.35
SNRNP40-201ENST00000263694 DNAJC5BQ9UF47 199 aa17.22■□□□□ 0.35
SNRNP40-201ENST00000263694 NCAPD3P42695 1498 aa17.17■□□□□ 0.34
SNRNP40-201ENST00000263694 BAZ1BQ9UIG0 1483 aaKnown RBP17.17■□□□□ 0.34
SNRNP40-201ENST00000263694 TOP2AP11388 1531 aaKnown RBP17.16■□□□□ 0.34
SNRNP40-201ENST00000263694 HMGXB3Q12766 1538 aa17.11■□□□□ 0.33
SNRNP40-201ENST00000263694 CCDC88BA6NC98 1476 aa17.03■□□□□ 0.32
SNRNP40-201ENST00000263694 PIAS4Q8N2W9 510 aaPredicted RBP16.85■□□□□ 0.29
SNRNP40-201ENST00000263694 NESP48681 1621 aa16.74■□□□□ 0.27
SNRNP40-201ENST00000263694 CADPSQ9ULU8 1353 aa16.73■□□□□ 0.27
SNRNP40-201ENST00000263694 CFTRP13569 1480 aa16.72■□□□□ 0.27
SNRNP40-201ENST00000263694 PLPPR3Q6T4P5 718 aa16.7■□□□□ 0.26
SNRNP40-201ENST00000263694 LAMC3Q9Y6N6 1575 aa16.63■□□□□ 0.25
SNRNP40-201ENST00000263694 PRDM2Q13029 1718 aa16.62■□□□□ 0.25
SNRNP40-201ENST00000263694 ABCC8Q09428 1581 aa16.59■□□□□ 0.25
SNRNP40-201ENST00000263694 FANCD2Q9BXW9 1451 aa16.56■□□□□ 0.24
SNRNP40-201ENST00000263694 PPP6R1Q9UPN7 881 aa16.55■□□□□ 0.24
SNRNP40-201ENST00000263694 KIF21AQ7Z4S6 1674 aa16.52■□□□□ 0.24
SNRNP40-201ENST00000263694 PDS5BQ9NTI5 1447 aa16.51■□□□□ 0.23
SNRNP40-201ENST00000263694 ADRA2BP18089 450 aa16.48■□□□□ 0.23
SNRNP40-201ENST00000263694 TRIM41Q8WV44 630 aa16.47■□□□□ 0.23
SNRNP40-201ENST00000263694 WRNQ14191 1432 aaPredicted RBP eCLIP16.47■□□□□ 0.23
SNRNP40-201ENST00000263694 CEP164Q9UPV0 1460 aa16.46■□□□□ 0.23
SNRNP40-201ENST00000263694 SYNJ1O43426 1573 aa16.44■□□□□ 0.22
SNRNP40-201ENST00000263694 CUX1P39880 1505 aa16.43■□□□□ 0.22
SNRNP40-201ENST00000263694 ERCC6Q03468 1493 aa16.42■□□□□ 0.22
SNRNP40-201ENST00000263694 URB2Q14146 1524 aaKnown RBP16.38■□□□□ 0.21
SNRNP40-201ENST00000263694 TOP2BQ02880 1626 aa16.37■□□□□ 0.21
SNRNP40-201ENST00000263694 BIVM-ERCC5R4GMW8 1640 aa16.35■□□□□ 0.21
SNRNP40-201ENST00000263694 TOPBP1Q92547 1522 aa16.35■□□□□ 0.21
SNRNP40-201ENST00000263694 DNMBPQ6XZF7 1577 aa16.34■□□□□ 0.21
SNRNP40-201ENST00000263694 MRC2Q9UBG0 1479 aa16.33■□□□□ 0.21
SNRNP40-201ENST00000263694 THOC2Q8NI27 1593 aaKnown RBP16.29■□□□□ 0.2
SNRNP40-201ENST00000263694 FGD5Q6ZNL6 1462 aa16.28■□□□□ 0.2
SNRNP40-201ENST00000263694 WDR62O43379 1518 aa16.25■□□□□ 0.19
SNRNP40-201ENST00000263694 POLA1P09884 1462 aaPredicted RBP16.24■□□□□ 0.19
SNRNP40-201ENST00000263694 FAM9AQ8IZU1 332 aaPredicted RBP16.24■□□□□ 0.19
SNRNP40-201ENST00000263694 RAD54L2Q9Y4B4 1467 aa16.23■□□□□ 0.19
SNRNP40-201ENST00000263694 SOGA1O94964 1423 aa16.22■□□□□ 0.19
SNRNP40-201ENST00000263694 RUSC2Q8N2Y8 1516 aa16.2■□□□□ 0.18
SNRNP40-201ENST00000263694 CUX2O14529 1486 aa16.17■□□□□ 0.18
SNRNP40-201ENST00000263694 TARBP1Q13395 1621 aaKnown RBP16.13■□□□□ 0.17
SNRNP40-201ENST00000263694 ABCA10Q8WWZ4 1543 aa16.1■□□□□ 0.17
SNRNP40-201ENST00000263694 WDR97A6NE52 1622 aa16.1■□□□□ 0.17
SNRNP40-201ENST00000263694 TDRD9Q8NDG6 1382 aaKnown RBP16.09■□□□□ 0.17
SNRNP40-201ENST00000263694 IFT140Q96RY7 1462 aa16.07■□□□□ 0.16
SNRNP40-201ENST00000263694 EHMT2Q96KQ7 1210 aa16.07■□□□□ 0.16
SNRNP40-201ENST00000263694 ZNF608Q9ULD9 1512 aaPredicted RBP16.06■□□□□ 0.16
SNRNP40-201ENST00000263694 KIF27Q86VH2 1401 aa16.06■□□□□ 0.16
SNRNP40-201ENST00000263694 AQRO60306 1485 aaKnown RBP eCLIP16.05■□□□□ 0.169e-7■■■□□ 16.7
SNRNP40-201ENST00000263694 CSRNP3Q8WYN3 585 aa16.04■□□□□ 0.16
SNRNP40-201ENST00000263694 LOC105371045A0A1W2PR82 267 aa16.02■□□□□ 0.16
SNRNP40-201ENST00000263694 EEA1Q15075 1411 aa16.01■□□□□ 0.15
SNRNP40-201ENST00000263694 ABCA5Q8WWZ7 1642 aa16■□□□□ 0.15
SNRNP40-201ENST00000263694 GAPVD1Q14C86 1478 aa16■□□□□ 0.15
SNRNP40-201ENST00000263694 IGF1RP08069 1367 aa15.99■□□□□ 0.15
SNRNP40-201ENST00000263694 EIF4G3O43432 1585 aaKnown RBP15.96■□□□□ 0.15
SNRNP40-201ENST00000263694 PBRM1Q86U86 1689 aa15.94■□□□□ 0.14
SNRNP40-201ENST00000263694 GRIN2BQ13224 1484 aa15.91■□□□□ 0.14
SNRNP40-201ENST00000263694 ERICH3Q5RHP9 1530 aa15.9■□□□□ 0.14
SNRNP40-201ENST00000263694 CARMIL1Q5VZK9 1371 aa15.89■□□□□ 0.13
SNRNP40-201ENST00000263694 PRXQ9BXM0 1461 aa15.88■□□□□ 0.13
SNRNP40-201ENST00000263694 RAPGEF2Q9Y4G8 1499 aa15.88■□□□□ 0.13
SNRNP40-201ENST00000263694 KIF21BO75037 1637 aa15.87■□□□□ 0.13
SNRNP40-201ENST00000263694 SNAPC4Q5SXM2 1469 aa15.86■□□□□ 0.13
SNRNP40-201ENST00000263694 CUL7Q14999 1698 aa15.84■□□□□ 0.13
SNRNP40-201ENST00000263694 UBTFP17480 764 aaKnown RBP15.83■□□□□ 0.13
SNRNP40-201ENST00000263694 GOLGA3Q08378 1498 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms