RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 NISCHQ9Y2I1 1504 aa62.16■■■■■ 7.54
TRIM28-204ENST00000594806 CCDC180Q9P1Z9 1646 aa55.24■■■■■ 6.43
TRIM28-204ENST00000594806 ABCC9O60706 1549 aa53.71■■■■■ 6.19
TRIM28-204ENST00000594806 NACADO15069 1562 aa51.9■■■■■ 5.9
TRIM28-204ENST00000594806 RB1CC1Q8TDY2 1594 aa51.87■■■■■ 5.89
TRIM28-204ENST00000594806 ZCCHC6Q5VYS8 1495 aaKnown RBP51.81■■■■■ 5.88
TRIM28-204ENST00000594806 DCAF8L2P0C7V8 631 aa51.78■■■■■ 5.88
TRIM28-204ENST00000594806 MYO15BQ96JP2 1530 aa51.71■■■■■ 5.87
TRIM28-204ENST00000594806 DCAF1Q9Y4B6 1507 aa51.54■■■■■ 5.84
TRIM28-204ENST00000594806 UNC13AQ9UPW8 1703 aa50.63■■■■■ 5.7
TRIM28-204ENST00000594806 SCRIBQ14160 1630 aa50.27■■■■■ 5.64
TRIM28-204ENST00000594806 BICRAQ9NZM4 1560 aa50.21■■■■■ 5.63
TRIM28-204ENST00000594806 PABPN1Q86U42 306 aaKnown RBP eCLIP50.2■■■■■ 5.63
TRIM28-204ENST00000594806 SHROOM4Q9ULL8 1493 aa49.88■■■■■ 5.57
TRIM28-204ENST00000594806 DNAJC5BQ9UF47 199 aa49.07■■■■■ 5.45
TRIM28-204ENST00000594806 EIF4G1Q04637 1599 aaKnown RBP48.9■■■■■ 5.42
TRIM28-204ENST00000594806 CC2D2AQ9P2K1 1620 aa48.64■■■■■ 5.38
TRIM28-204ENST00000594806 CECR2Q9BXF3 1484 aa48.32■■■■■ 5.33
TRIM28-204ENST00000594806 BAZ1AQ9NRL2 1556 aaPredicted RBP48.2■■■■■ 5.31
TRIM28-204ENST00000594806 SMARCA4P51532 1647 aa48.18■■■■■ 5.3
TRIM28-204ENST00000594806 SMARCA2P51531 1590 aa47.88■■■■■ 5.26
TRIM28-204ENST00000594806 ATAD2BQ9ULI0 1458 aa47.87■■■■■ 5.25
TRIM28-204ENST00000594806 NCAPD3P42695 1498 aa47.86■■■■■ 5.25
TRIM28-204ENST00000594806 MROH2BQ7Z745 1585 aa47.85■■■■■ 5.25
TRIM28-204ENST00000594806 PEG3Q9GZU2 1588 aa47.77■■■■■ 5.24
TRIM28-204ENST00000594806 HMGXB3Q12766 1538 aa47.65■■■■■ 5.22
TRIM28-204ENST00000594806 BAZ1BQ9UIG0 1483 aaKnown RBP47.5■■■■■ 5.19
TRIM28-204ENST00000594806 RSF1Q96T23 1441 aaPredicted RBP47.41■■■■■ 5.18
TRIM28-204ENST00000594806 WIZO95785 1651 aa47.34■■■■■ 5.17
TRIM28-204ENST00000594806 TOP2AP11388 1531 aaKnown RBP46.91■■■■■ 5.1
TRIM28-204ENST00000594806 LAMC3Q9Y6N6 1575 aa46.57■■■■■ 5.05
TRIM28-204ENST00000594806 NESP48681 1621 aa46.51■■■■■ 5.04
TRIM28-204ENST00000594806 CADPSQ9ULU8 1353 aa46.47■■■■■ 5.03
TRIM28-204ENST00000594806 CCDC88BA6NC98 1476 aa46.33■■■■■ 5.01
TRIM28-204ENST00000594806 ERCC6Q03468 1493 aa46.33■■■■■ 5.01
TRIM28-204ENST00000594806 SUPT5HO00267 1087 aaKnown RBP46.3■■■■■ 5
TRIM28-204ENST00000594806 PDS5BQ9NTI5 1447 aa46.27■■■■■ 5
TRIM28-204ENST00000594806 CFTRP13569 1480 aa46.23■■■■■ 4.99
TRIM28-204ENST00000594806 KIF21AQ7Z4S6 1674 aa46.01■■■■■ 4.96
TRIM28-204ENST00000594806 PRDM2Q13029 1718 aa45.93■■■■■ 4.94
TRIM28-204ENST00000594806 FANCD2Q9BXW9 1451 aa45.89■■■■■ 4.94
TRIM28-204ENST00000594806 CUX2O14529 1486 aa45.84■■■■■ 4.93
TRIM28-204ENST00000594806 CEP164Q9UPV0 1460 aa45.83■■■■■ 4.93
TRIM28-204ENST00000594806 THOC2Q8NI27 1593 aaKnown RBP45.83■■■■■ 4.93
TRIM28-204ENST00000594806 MRC2Q9UBG0 1479 aa45.73■■■■■ 4.91
TRIM28-204ENST00000594806 WDR62O43379 1518 aa45.57■■■■■ 4.88
TRIM28-204ENST00000594806 URB2Q14146 1524 aaKnown RBP45.38■■■■■ 4.86
TRIM28-204ENST00000594806 ABCC8Q09428 1581 aa45.32■■■■■ 4.85
TRIM28-204ENST00000594806 TOPBP1Q92547 1522 aa45.18■■■■■ 4.82
TRIM28-204ENST00000594806 DNMBPQ6XZF7 1577 aa45.17■■■■■ 4.82
TRIM28-204ENST00000594806 IFT140Q96RY7 1462 aa44.9■■■■■ 4.78
TRIM28-204ENST00000594806 CUX1P39880 1505 aa44.89■■■■■ 4.78
TRIM28-204ENST00000594806 POLA1P09884 1462 aaPredicted RBP44.8■■■■■ 4.76
TRIM28-204ENST00000594806 WRNQ14191 1432 aaPredicted RBP eCLIP44.73■■■■■ 4.75
TRIM28-204ENST00000594806 FGD5Q6ZNL6 1462 aa44.72■■■■■ 4.75
TRIM28-204ENST00000594806 TARBP1Q13395 1621 aaKnown RBP44.67■■■■■ 4.74
TRIM28-204ENST00000594806 SOGA1O94964 1423 aa44.66■■■■■ 4.74
TRIM28-204ENST00000594806 TOP2BQ02880 1626 aa44.61■■■■■ 4.73
TRIM28-204ENST00000594806 BIVM-ERCC5R4GMW8 1640 aa44.61■■■■■ 4.73
TRIM28-204ENST00000594806 ZNF608Q9ULD9 1512 aaPredicted RBP44.56■■■■■ 4.72
TRIM28-204ENST00000594806 RAD54L2Q9Y4B4 1467 aa44.56■■■■■ 4.72
TRIM28-204ENST00000594806 SYNJ1O43426 1573 aa44.53■■■■■ 4.72
TRIM28-204ENST00000594806 WDR97A6NE52 1622 aa44.46■■■■■ 4.71
TRIM28-204ENST00000594806 EIF4G3O43432 1585 aaKnown RBP44.43■■■■■ 4.7
TRIM28-204ENST00000594806 AQRO60306 1485 aaKnown RBP eCLIP44.36■■■■■ 4.697e-10■■■■■ 43.7
TRIM28-204ENST00000594806 ABCA10Q8WWZ4 1543 aa44.35■■■■■ 4.69
TRIM28-204ENST00000594806 TDRD9Q8NDG6 1382 aaKnown RBP44.31■■■■■ 4.68
TRIM28-204ENST00000594806 DNAJC5Q9H3Z4 198 aa44.16■■■■■ 4.66
TRIM28-204ENST00000594806 GAPVD1Q14C86 1478 aa44.15■■■■■ 4.66
TRIM28-204ENST00000594806 GRIN2BQ13224 1484 aa44.12■■■■■ 4.65
TRIM28-204ENST00000594806 ABCA5Q8WWZ7 1642 aa44.12■■■■■ 4.65
TRIM28-204ENST00000594806 PBRM1Q86U86 1689 aa44.01■■■■■ 4.64
TRIM28-204ENST00000594806 MAGI1Q96QZ7 1491 aaPredicted RBP44.01■■■■■ 4.64
TRIM28-204ENST00000594806 OSCARQ8IYS5 282 aa43.98■■■■■ 4.63
TRIM28-204ENST00000594806 SNAPC4Q5SXM2 1469 aa43.96■■■■■ 4.63
TRIM28-204ENST00000594806 ERICH3Q5RHP9 1530 aa43.84■■■■■ 4.61
TRIM28-204ENST00000594806 CHD1O14646 1710 aa43.84■■■■■ 4.61
TRIM28-204ENST00000594806 TRIM41Q8WV44 630 aa43.81■■■■■ 4.6
TRIM28-204ENST00000594806 SYNJ2O15056 1496 aa43.81■■■■■ 4.6
TRIM28-204ENST00000594806 KIF27Q86VH2 1401 aa43.81■■■■■ 4.6
TRIM28-204ENST00000594806 FBLN2P98095 1184 aa43.8■■■■■ 4.6
TRIM28-204ENST00000594806 CHMP7Q8WUX9 453 aaPredicted RBP43.78■■■■■ 4.6
TRIM28-204ENST00000594806 ADAMTS12P58397 1594 aa43.67■■■■■ 4.58
TRIM28-204ENST00000594806 FHAD1B1AJZ9 1412 aa43.66■■■■■ 4.58
TRIM28-204ENST00000594806 IGF1RP08069 1367 aa43.57■■■■■ 4.57
TRIM28-204ENST00000594806 GRIN2AQ12879 1464 aa43.53■■■■■ 4.56
TRIM28-204ENST00000594806 CUL7Q14999 1698 aa43.49■■■■■ 4.55
TRIM28-204ENST00000594806 CLASP1Q7Z460 1538 aa43.39■■■■■ 4.54
TRIM28-204ENST00000594806 CHIC1Q5VXU3 224 aa43.38■■■■■ 4.53
TRIM28-204ENST00000594806 NUP160Q12769 1436 aa43.35■■■■■ 4.53
TRIM28-204ENST00000594806 RUSC2Q8N2Y8 1516 aa43.33■■■■■ 4.53
TRIM28-204ENST00000594806 CARMIL1Q5VZK9 1371 aa43.33■■■■■ 4.53
TRIM28-204ENST00000594806 CEP170Q5SW79 1584 aa43.26■■■■■ 4.52
TRIM28-204ENST00000594806 ARHGEF11O15085 1522 aa43.19■■■■■ 4.5
TRIM28-204ENST00000594806 EEA1Q15075 1411 aa43.16■■■■■ 4.5
TRIM28-204ENST00000594806 RIMBP3CA6NJZ7 1639 aa43.16■■■■■ 4.5
TRIM28-204ENST00000594806 RIMBP3BA6NNM3 1639 aa43.16■■■■■ 4.5
TRIM28-204ENST00000594806 RIMBP3Q9UFD9 1639 aa43.16■■■■■ 4.5
TRIM28-204ENST00000594806 RAPGEF2Q9Y4G8 1499 aa43.11■■■■■ 4.49
TRIM28-204ENST00000594806 CSRNP3Q8WYN3 585 aa43.02■■■■■ 4.48
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms