Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
KRT39Q6A163 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
KRT39Q6A163 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT39Q6A163 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
KRT39Q6A163 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
KRT39Q6A163 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
KRT39Q6A163 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
KRT39Q6A163 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.86■□□□□ 0.93
KRT39Q6A163 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC20.86■□□□□ 0.93
KRT39Q6A163 RARRES2P10-201ENST00000564312 460 ntBASIC20.86■□□□□ 0.93
KRT39Q6A163 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC20.86■□□□□ 0.93
KRT39Q6A163 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC20.86■□□□□ 0.93
KRT39Q6A163 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.86■□□□□ 0.93
KRT39Q6A163 SPIB-206ENST00000596074 847 ntTSL 2 BASIC20.86■□□□□ 0.93
KRT39Q6A163 AL353708.3-201ENST00000610272 989 ntBASIC20.86■□□□□ 0.93
KRT39Q6A163 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT39Q6A163 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT39Q6A163 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT39Q6A163 TEX21P-204ENST00000641479 1693 ntBASIC20.86■□□□□ 0.93
KRT39Q6A163 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT39Q6A163 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT39Q6A163 PTGES2-AS1-201ENST00000443493 2100 ntBASIC20.86■□□□□ 0.93
KRT39Q6A163 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
KRT39Q6A163 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC20.85■□□□□ 0.93
KRT39Q6A163 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
KRT39Q6A163 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.85■□□□□ 0.93
KRT39Q6A163 NIFKP9-201ENST00000419265 221 ntBASIC20.85■□□□□ 0.93
KRT39Q6A163 AL353807.1-201ENST00000427475 662 ntBASIC20.85■□□□□ 0.93
KRT39Q6A163 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
KRT39Q6A163 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
KRT39Q6A163 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.85■□□□□ 0.93
KRT39Q6A163 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
KRT39Q6A163 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
KRT39Q6A163 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
KRT39Q6A163 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
KRT39Q6A163 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC20.85■□□□□ 0.93
KRT39Q6A163 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
KRT39Q6A163 AC141586.3-201ENST00000562166 1838 ntBASIC20.85■□□□□ 0.93
KRT39Q6A163 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC20.85■□□□□ 0.93
KRT39Q6A163 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
KRT39Q6A163 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
KRT39Q6A163 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
KRT39Q6A163 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
KRT39Q6A163 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
KRT39Q6A163 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
KRT39Q6A163 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
KRT39Q6A163 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
KRT39Q6A163 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
KRT39Q6A163 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
KRT39Q6A163 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
KRT39Q6A163 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
KRT39Q6A163 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
KRT39Q6A163 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.84■□□□□ 0.93
KRT39Q6A163 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC20.84■□□□□ 0.93
KRT39Q6A163 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.84■□□□□ 0.93
KRT39Q6A163 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC20.84■□□□□ 0.93
KRT39Q6A163 AL445675.2-201ENST00000620291 557 ntBASIC20.84■□□□□ 0.93
KRT39Q6A163 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.84■□□□□ 0.93
KRT39Q6A163 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.84■□□□□ 0.93
KRT39Q6A163 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
KRT39Q6A163 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
KRT39Q6A163 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
KRT39Q6A163 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
KRT39Q6A163 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
KRT39Q6A163 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
KRT39Q6A163 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
KRT39Q6A163 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
KRT39Q6A163 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
KRT39Q6A163 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC20.83■□□□□ 0.93
KRT39Q6A163 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.93
KRT39Q6A163 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
KRT39Q6A163 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
KRT39Q6A163 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
KRT39Q6A163 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
KRT39Q6A163 PEX7-202ENST00000367756 680 ntTSL 3 BASIC20.83■□□□□ 0.93
KRT39Q6A163 AL158047.1-201ENST00000445918 881 ntBASIC20.83■□□□□ 0.93
KRT39Q6A163 AP002982.1-201ENST00000492365 877 ntBASIC20.83■□□□□ 0.93
KRT39Q6A163 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC20.83■□□□□ 0.93
KRT39Q6A163 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.83■□□□□ 0.93
KRT39Q6A163 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.83■□□□□ 0.93
KRT39Q6A163 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.83■□□□□ 0.93
KRT39Q6A163 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
KRT39Q6A163 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC20.83■□□□□ 0.93
KRT39Q6A163 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC20.83■□□□□ 0.93
KRT39Q6A163 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.83■□□□□ 0.93
KRT39Q6A163 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
KRT39Q6A163 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC20.83■□□□□ 0.92
KRT39Q6A163 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
KRT39Q6A163 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC20.83■□□□□ 0.92
KRT39Q6A163 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC20.83■□□□□ 0.92
KRT39Q6A163 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC20.83■□□□□ 0.92
KRT39Q6A163 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
KRT39Q6A163 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.82■□□□□ 0.92
KRT39Q6A163 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.82■□□□□ 0.92
KRT39Q6A163 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.82■□□□□ 0.92
KRT39Q6A163 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
KRT39Q6A163 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
KRT39Q6A163 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
KRT39Q6A163 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
KRT39Q6A163 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms