Protein–RNA interactions for Protein: Q9H1E3

NUCKS1, Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1, humanhuman

Known RBP Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1Q9H1E3 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
NUCKS1Q9H1E3 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC27.77■■■□□ 2.04
NUCKS1Q9H1E3 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC27.77■■■□□ 2.04
NUCKS1Q9H1E3 DUX4L28-201ENST00000623687 678 ntBASIC27.77■■■□□ 2.04
NUCKS1Q9H1E3 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC27.77■■■□□ 2.04
NUCKS1Q9H1E3 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC27.77■■■□□ 2.04
NUCKS1Q9H1E3 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC27.76■■■□□ 2.03
NUCKS1Q9H1E3 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC27.75■■■□□ 2.03
NUCKS1Q9H1E3 BX255925.1-201ENST00000566954 1854 ntBASIC27.75■■■□□ 2.03
NUCKS1Q9H1E3 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
NUCKS1Q9H1E3 AC005559.1-201ENST00000589661 871 ntBASIC27.75■■■□□ 2.03
NUCKS1Q9H1E3 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
NUCKS1Q9H1E3 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
NUCKS1Q9H1E3 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
NUCKS1Q9H1E3 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
NUCKS1Q9H1E3 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
NUCKS1Q9H1E3 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC27.74■■■□□ 2.03
NUCKS1Q9H1E3 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
NUCKS1Q9H1E3 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC27.74■■■□□ 2.03
NUCKS1Q9H1E3 MIR3665-201ENST00000578708 105 ntBASIC27.73■■■□□ 2.03
NUCKS1Q9H1E3 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC27.73■■■□□ 2.03
NUCKS1Q9H1E3 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC27.72■■■□□ 2.03
NUCKS1Q9H1E3 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
NUCKS1Q9H1E3 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC27.72■■■□□ 2.03
NUCKS1Q9H1E3 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
NUCKS1Q9H1E3 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC27.71■■■□□ 2.03
NUCKS1Q9H1E3 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
NUCKS1Q9H1E3 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC27.71■■■□□ 2.03
NUCKS1Q9H1E3 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC27.71■■■□□ 2.03
NUCKS1Q9H1E3 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC27.7■■■□□ 2.03
NUCKS1Q9H1E3 AL121749.1-202ENST00000609313 2153 ntBASIC27.7■■■□□ 2.03
NUCKS1Q9H1E3 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
NUCKS1Q9H1E3 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC27.7■■■□□ 2.02
NUCKS1Q9H1E3 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC27.7■■■□□ 2.02
NUCKS1Q9H1E3 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
NUCKS1Q9H1E3 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
NUCKS1Q9H1E3 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC27.69■■■□□ 2.02
NUCKS1Q9H1E3 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC27.69■■■□□ 2.02
NUCKS1Q9H1E3 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC27.69■■■□□ 2.02
NUCKS1Q9H1E3 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
NUCKS1Q9H1E3 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
NUCKS1Q9H1E3 SHF-208ENST00000560734 1731 ntTSL 3 BASIC27.67■■■□□ 2.02
NUCKS1Q9H1E3 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC27.66■■■□□ 2.02
NUCKS1Q9H1E3 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
NUCKS1Q9H1E3 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
NUCKS1Q9H1E3 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
NUCKS1Q9H1E3 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC27.64■■■□□ 2.02
NUCKS1Q9H1E3 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC27.64■■■□□ 2.02
NUCKS1Q9H1E3 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC27.64■■■□□ 2.02
NUCKS1Q9H1E3 AC087741.3-201ENST00000624270 1347 ntBASIC27.64■■■□□ 2.01
NUCKS1Q9H1E3 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
NUCKS1Q9H1E3 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
NUCKS1Q9H1E3 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
NUCKS1Q9H1E3 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC27.62■■■□□ 2.01
NUCKS1Q9H1E3 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
NUCKS1Q9H1E3 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC27.61■■■□□ 2.01
NUCKS1Q9H1E3 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC27.61■■■□□ 2.01
NUCKS1Q9H1E3 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
NUCKS1Q9H1E3 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
NUCKS1Q9H1E3 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
NUCKS1Q9H1E3 LINC01003-201ENST00000564834 1764 ntBASIC27.6■■■□□ 2.01
NUCKS1Q9H1E3 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC27.6■■■□□ 2.01
NUCKS1Q9H1E3 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC27.59■■■□□ 2.01
NUCKS1Q9H1E3 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC27.59■■■□□ 2.01
NUCKS1Q9H1E3 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
NUCKS1Q9H1E3 AC100797.4-201ENST00000631653 1827 ntBASIC27.58■■■□□ 2.01
NUCKS1Q9H1E3 RPS2-209ENST00000529806 993 ntTSL 3 BASIC27.58■■■□□ 2.01
NUCKS1Q9H1E3 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC27.58■■■□□ 2.01
NUCKS1Q9H1E3 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC27.58■■■□□ 2.01
NUCKS1Q9H1E3 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
NUCKS1Q9H1E3 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC27.57■■■□□ 2
NUCKS1Q9H1E3 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC27.57■■■□□ 2
NUCKS1Q9H1E3 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC27.56■■■□□ 2
NUCKS1Q9H1E3 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
NUCKS1Q9H1E3 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC27.56■■■□□ 2
NUCKS1Q9H1E3 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC27.55■■■□□ 2
NUCKS1Q9H1E3 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC27.55■■■□□ 2
NUCKS1Q9H1E3 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
NUCKS1Q9H1E3 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
NUCKS1Q9H1E3 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC27.55■■■□□ 2
NUCKS1Q9H1E3 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC27.54■■■□□ 2
NUCKS1Q9H1E3 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
NUCKS1Q9H1E3 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC27.53■■■□□ 2
NUCKS1Q9H1E3 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC27.52■■■□□ 2
NUCKS1Q9H1E3 AP002414.2-202ENST00000590929 1450 ntBASIC27.52■■■□□ 2
NUCKS1Q9H1E3 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC27.52■■■□□ 2
NUCKS1Q9H1E3 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC27.52■■■□□ 2
NUCKS1Q9H1E3 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC27.52■■■□□ 2
NUCKS1Q9H1E3 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC27.52■■■□□ 2
NUCKS1Q9H1E3 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
NUCKS1Q9H1E3 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC27.51■■□□□ 1.99
NUCKS1Q9H1E3 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC27.51■■□□□ 1.99
NUCKS1Q9H1E3 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
NUCKS1Q9H1E3 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
NUCKS1Q9H1E3 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
NUCKS1Q9H1E3 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
NUCKS1Q9H1E3 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC27.49■■□□□ 1.99
NUCKS1Q9H1E3 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC27.49■■□□□ 1.99
NUCKS1Q9H1E3 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
NUCKS1Q9H1E3 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC27.49■■□□□ 1.99
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms