Protein–RNA interactions for Protein: Q9BYR8

KRTAP3-1, Keratin-associated protein 3-1, humanhuman

Predictions only

Length 98 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRTAP3-1Q9BYR8 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
KRTAP3-1Q9BYR8 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
KRTAP3-1Q9BYR8 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
KRTAP3-1Q9BYR8 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
KRTAP3-1Q9BYR8 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC13.06□□□□□ -0.32
KRTAP3-1Q9BYR8 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC13.05□□□□□ -0.32
KRTAP3-1Q9BYR8 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
KRTAP3-1Q9BYR8 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
KRTAP3-1Q9BYR8 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
KRTAP3-1Q9BYR8 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC13.05□□□□□ -0.32
KRTAP3-1Q9BYR8 PKM-203ENST00000389093 2279 ntTSL 5 BASIC13.05□□□□□ -0.32
KRTAP3-1Q9BYR8 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
KRTAP3-1Q9BYR8 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC13.04□□□□□ -0.32
KRTAP3-1Q9BYR8 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
KRTAP3-1Q9BYR8 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
KRTAP3-1Q9BYR8 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
KRTAP3-1Q9BYR8 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC13.04□□□□□ -0.32
KRTAP3-1Q9BYR8 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC13.03□□□□□ -0.32
KRTAP3-1Q9BYR8 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
KRTAP3-1Q9BYR8 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC13.03□□□□□ -0.32
KRTAP3-1Q9BYR8 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
KRTAP3-1Q9BYR8 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC13.03□□□□□ -0.32
KRTAP3-1Q9BYR8 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
KRTAP3-1Q9BYR8 AC127502.1-201ENST00000399971 1502 ntBASIC13.03□□□□□ -0.32
KRTAP3-1Q9BYR8 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
KRTAP3-1Q9BYR8 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
KRTAP3-1Q9BYR8 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
KRTAP3-1Q9BYR8 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
KRTAP3-1Q9BYR8 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC13.02□□□□□ -0.33
KRTAP3-1Q9BYR8 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
KRTAP3-1Q9BYR8 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC13.01□□□□□ -0.33
KRTAP3-1Q9BYR8 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC13.01□□□□□ -0.33
KRTAP3-1Q9BYR8 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
KRTAP3-1Q9BYR8 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
KRTAP3-1Q9BYR8 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
KRTAP3-1Q9BYR8 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC13.01□□□□□ -0.33
KRTAP3-1Q9BYR8 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
KRTAP3-1Q9BYR8 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
KRTAP3-1Q9BYR8 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
KRTAP3-1Q9BYR8 AL449106.1-201ENST00000608517 1980 ntBASIC13□□□□□ -0.33
KRTAP3-1Q9BYR8 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
KRTAP3-1Q9BYR8 AC100797.4-201ENST00000631653 1827 ntBASIC13□□□□□ -0.33
KRTAP3-1Q9BYR8 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
KRTAP3-1Q9BYR8 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
KRTAP3-1Q9BYR8 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
KRTAP3-1Q9BYR8 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC13□□□□□ -0.33
KRTAP3-1Q9BYR8 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC13□□□□□ -0.33
KRTAP3-1Q9BYR8 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC13□□□□□ -0.33
KRTAP3-1Q9BYR8 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
KRTAP3-1Q9BYR8 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC12.99□□□□□ -0.33
KRTAP3-1Q9BYR8 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC12.99□□□□□ -0.33
KRTAP3-1Q9BYR8 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC12.99□□□□□ -0.33
KRTAP3-1Q9BYR8 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
KRTAP3-1Q9BYR8 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
KRTAP3-1Q9BYR8 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
KRTAP3-1Q9BYR8 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
KRTAP3-1Q9BYR8 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
KRTAP3-1Q9BYR8 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC12.98□□□□□ -0.33
KRTAP3-1Q9BYR8 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
KRTAP3-1Q9BYR8 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
KRTAP3-1Q9BYR8 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
KRTAP3-1Q9BYR8 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
KRTAP3-1Q9BYR8 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
KRTAP3-1Q9BYR8 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC12.97□□□□□ -0.33
KRTAP3-1Q9BYR8 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC12.97□□□□□ -0.33
KRTAP3-1Q9BYR8 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC12.97□□□□□ -0.33
KRTAP3-1Q9BYR8 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
KRTAP3-1Q9BYR8 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
KRTAP3-1Q9BYR8 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
KRTAP3-1Q9BYR8 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
KRTAP3-1Q9BYR8 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC12.97□□□□□ -0.33
KRTAP3-1Q9BYR8 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
KRTAP3-1Q9BYR8 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
KRTAP3-1Q9BYR8 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
KRTAP3-1Q9BYR8 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
KRTAP3-1Q9BYR8 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
KRTAP3-1Q9BYR8 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
KRTAP3-1Q9BYR8 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
KRTAP3-1Q9BYR8 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
KRTAP3-1Q9BYR8 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC12.95□□□□□ -0.34
KRTAP3-1Q9BYR8 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC12.95□□□□□ -0.34
KRTAP3-1Q9BYR8 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
KRTAP3-1Q9BYR8 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
KRTAP3-1Q9BYR8 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
KRTAP3-1Q9BYR8 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
KRTAP3-1Q9BYR8 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
KRTAP3-1Q9BYR8 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
KRTAP3-1Q9BYR8 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
KRTAP3-1Q9BYR8 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC12.93□□□□□ -0.34
KRTAP3-1Q9BYR8 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC12.93□□□□□ -0.34
KRTAP3-1Q9BYR8 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
KRTAP3-1Q9BYR8 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
KRTAP3-1Q9BYR8 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
KRTAP3-1Q9BYR8 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
KRTAP3-1Q9BYR8 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
KRTAP3-1Q9BYR8 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
KRTAP3-1Q9BYR8 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC12.93□□□□□ -0.34
KRTAP3-1Q9BYR8 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
KRTAP3-1Q9BYR8 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
KRTAP3-1Q9BYR8 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 9.2 ms