Protein–RNA interactions for Protein: P04085

PDGFA, Platelet-derived growth factor subunit A, humanhuman

Predictions only

Length 211 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFAP04085 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18.3■□□□□ 0.52
PDGFAP04085 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFAP04085 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFAP04085 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFAP04085 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFAP04085 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFAP04085 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC18.3■□□□□ 0.52
PDGFAP04085 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFAP04085 AL137013.1-201ENST00000432946 1228 ntBASIC18.3■□□□□ 0.52
PDGFAP04085 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFAP04085 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC18.3■□□□□ 0.52
PDGFAP04085 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFAP04085 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFAP04085 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFAP04085 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFAP04085 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFAP04085 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.3■□□□□ 0.52
PDGFAP04085 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.3■□□□□ 0.52
PDGFAP04085 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC18.3■□□□□ 0.52
PDGFAP04085 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
PDGFAP04085 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC18.3■□□□□ 0.52
PDGFAP04085 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFAP04085 PARN-205ENST00000539279 1557 ntTSL 2 BASIC18.3■□□□□ 0.52
PDGFAP04085 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PDGFAP04085 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC18.29■□□□□ 0.52
PDGFAP04085 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PDGFAP04085 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.29■□□□□ 0.52
PDGFAP04085 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC18.29■□□□□ 0.52
PDGFAP04085 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC18.29■□□□□ 0.52
PDGFAP04085 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PDGFAP04085 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.29■□□□□ 0.52
PDGFAP04085 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.29■□□□□ 0.52
PDGFAP04085 NIFKP9-201ENST00000419265 221 ntBASIC18.29■□□□□ 0.52
PDGFAP04085 SLC25A3P1-201ENST00000443844 931 ntBASIC18.29■□□□□ 0.52
PDGFAP04085 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PDGFAP04085 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.29■□□□□ 0.52
PDGFAP04085 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC18.29■□□□□ 0.52
PDGFAP04085 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC18.29■□□□□ 0.52
PDGFAP04085 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PDGFAP04085 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.29■□□□□ 0.52
PDGFAP04085 PTBP1P-201ENST00000554374 1601 ntBASIC18.29■□□□□ 0.52
PDGFAP04085 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.29■□□□□ 0.52
PDGFAP04085 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.29■□□□□ 0.52
PDGFAP04085 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PDGFAP04085 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
PDGFAP04085 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.29■□□□□ 0.52
PDGFAP04085 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.29■□□□□ 0.52
PDGFAP04085 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.29■□□□□ 0.52
PDGFAP04085 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.29■□□□□ 0.52
PDGFAP04085 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PDGFAP04085 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PDGFAP04085 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PDGFAP04085 AC087289.5-201ENST00000586076 3175 ntBASIC18.28■□□□□ 0.52
PDGFAP04085 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PDGFAP04085 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PDGFAP04085 KRT18P22-201ENST00000402024 1347 ntBASIC18.28■□□□□ 0.52
PDGFAP04085 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.28■□□□□ 0.52
PDGFAP04085 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PDGFAP04085 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC18.28■□□□□ 0.52
PDGFAP04085 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
PDGFAP04085 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PDGFAP04085 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.28■□□□□ 0.52
PDGFAP04085 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PDGFAP04085 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PDGFAP04085 CRAT-202ENST00000393384 973 ntTSL 2 BASIC18.28■□□□□ 0.52
PDGFAP04085 AC104076.2-201ENST00000448912 469 ntBASIC18.28■□□□□ 0.52
PDGFAP04085 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.28■□□□□ 0.52
PDGFAP04085 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.28■□□□□ 0.52
PDGFAP04085 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
PDGFAP04085 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PDGFAP04085 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PDGFAP04085 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PDGFAP04085 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PDGFAP04085 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PDGFAP04085 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PDGFAP04085 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PDGFAP04085 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PDGFAP04085 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
PDGFAP04085 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC18.27■□□□□ 0.52
PDGFAP04085 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PDGFAP04085 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.27■□□□□ 0.52
PDGFAP04085 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PDGFAP04085 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PDGFAP04085 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PDGFAP04085 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
PDGFAP04085 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PDGFAP04085 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PDGFAP04085 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PDGFAP04085 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
PDGFAP04085 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.27■□□□□ 0.52
PDGFAP04085 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PDGFAP04085 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.27■□□□□ 0.52
PDGFAP04085 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
PDGFAP04085 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
PDGFAP04085 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PDGFAP04085 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
PDGFAP04085 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PDGFAP04085 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PDGFAP04085 KSR1P1-201ENST00000446298 240 ntBASIC18.27■□□□□ 0.52
PDGFAP04085 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms