RNA–Protein interactions for RNA: ENST00000590550.6

MBD3-207, Transcript of methyl-CpG binding domain protein 3, humanhuman

TSL 2 BASIC

Gene MBD3, Length 2,782 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MBD3-207ENST00000590550 NISCHQ9Y2I1 1504 aa39.34■■■■□ 3.89
MBD3-207ENST00000590550 SHROOM4Q9ULL8 1493 aa33.99■■■■□ 3.03
MBD3-207ENST00000590550 SUPT5HO00267 1087 aaKnown RBP33.33■■■□□ 2.93
MBD3-207ENST00000590550 ZCCHC6Q5VYS8 1495 aaKnown RBP33.26■■■□□ 2.91
MBD3-207ENST00000590550 CCDC180Q9P1Z9 1646 aa33.23■■■□□ 2.91
MBD3-207ENST00000590550 DCAF8L2P0C7V8 631 aa33.04■■■□□ 2.88
MBD3-207ENST00000590550 CHIC1Q5VXU3 224 aa32.27■■■□□ 2.76
MBD3-207ENST00000590550 MYO15BQ96JP2 1530 aa32.21■■■□□ 2.75
MBD3-207ENST00000590550 DCAF1Q9Y4B6 1507 aa32.07■■■□□ 2.72
MBD3-207ENST00000590550 HRCP23327 699 aa31.79■■■□□ 2.68
MBD3-207ENST00000590550 LOC105371045A0A1W2PR82 267 aa31.48■■■□□ 2.63
MBD3-207ENST00000590550 SCRIBQ14160 1630 aa31.48■■■□□ 2.63
MBD3-207ENST00000590550 PCGF6Q9BYE7 350 aa31.45■■■□□ 2.63
MBD3-207ENST00000590550 ABCC9O60706 1549 aa31.38■■■□□ 2.61
MBD3-207ENST00000590550 PPARGC1BQ86YN6 1023 aaKnown RBP31.34■■■□□ 2.61
MBD3-207ENST00000590550 RSF1Q96T23 1441 aaPredicted RBP31.24■■■□□ 2.59
MBD3-207ENST00000590550 PELP1Q8IZL8 1130 aaKnown RBP31.04■■■□□ 2.56
MBD3-207ENST00000590550 RB1CC1Q8TDY2 1594 aa30.96■■■□□ 2.55
MBD3-207ENST00000590550 TRIM41Q8WV44 630 aa30.9■■■□□ 2.54
MBD3-207ENST00000590550 FAM9AQ8IZU1 332 aaPredicted RBP30.86■■■□□ 2.53
MBD3-207ENST00000590550 CECR2Q9BXF3 1484 aa30.86■■■□□ 2.53
MBD3-207ENST00000590550 NACADO15069 1562 aa30.77■■■□□ 2.52
MBD3-207ENST00000590550 EHMT2Q96KQ7 1210 aa30.77■■■□□ 2.52
MBD3-207ENST00000590550 MROH2BQ7Z745 1585 aa30.69■■■□□ 2.5
MBD3-207ENST00000590550 TRIM26Q12899 539 aaPredicted RBP30.65■■■□□ 2.5
MBD3-207ENST00000590550 WIZO95785 1651 aa30.54■■■□□ 2.48
MBD3-207ENST00000590550 SCAF1Q9H7N4 1312 aaKnown RBP30.36■■■□□ 2.45
MBD3-207ENST00000590550 BAZ1AQ9NRL2 1556 aaPredicted RBP30.19■■■□□ 2.42
MBD3-207ENST00000590550 EIF4G1Q04637 1599 aaKnown RBP30■■■□□ 2.39
MBD3-207ENST00000590550 ABCC8Q09428 1581 aa29.96■■■□□ 2.39
MBD3-207ENST00000590550 SMARCA4P51532 1647 aa29.94■■■□□ 2.38
MBD3-207ENST00000590550 UNC13AQ9UPW8 1703 aa29.93■■■□□ 2.38
MBD3-207ENST00000590550 PABPN1Q86U42 306 aaKnown RBP eCLIP29.92■■■□□ 2.383e-6■■■□□ 17.7
MBD3-207ENST00000590550 TOP2AP11388 1531 aaKnown RBP29.92■■■□□ 2.38
MBD3-207ENST00000590550 CCDC88BA6NC98 1476 aa29.91■■■□□ 2.38
MBD3-207ENST00000590550 ZEB1P37275 1124 aaPredicted RBP29.86■■■□□ 2.37
MBD3-207ENST00000590550 MYT1Q01538 1121 aa29.86■■■□□ 2.37
MBD3-207ENST00000590550 SMARCA2P51531 1590 aa29.81■■■□□ 2.36
MBD3-207ENST00000590550 TTBK1Q5TCY1 1321 aaPredicted RBP29.75■■■□□ 2.35
MBD3-207ENST00000590550 SOGA1O94964 1423 aa29.69■■■□□ 2.34
MBD3-207ENST00000590550 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.63■■■□□ 2.33
MBD3-207ENST00000590550 RUSC2Q8N2Y8 1516 aa29.57■■■□□ 2.32
MBD3-207ENST00000590550 BICRAQ9NZM4 1560 aa29.57■■■□□ 2.32
MBD3-207ENST00000590550 CEP162Q5TB80 1403 aa29.51■■■□□ 2.31
MBD3-207ENST00000590550 UBTFP17480 764 aaKnown RBP29.48■■■□□ 2.31
MBD3-207ENST00000590550 CCER1Q8TC90 406 aaPredicted RBP29.47■■■□□ 2.31
MBD3-207ENST00000590550 CSRNP3Q8WYN3 585 aa29.47■■■□□ 2.31
MBD3-207ENST00000590550 ACIN1Q9UKV3 1341 aaKnown RBP29.45■■■□□ 2.3
MBD3-207ENST00000590550 NEUROD1Q13562 356 aa29.42■■■□□ 2.3
MBD3-207ENST00000590550 TNIKQ9UKE5 1360 aa29.36■■■□□ 2.29
MBD3-207ENST00000590550 WRNQ14191 1432 aaPredicted RBP eCLIP29.34■■■□□ 2.295e-6■■■■■ 46
MBD3-207ENST00000590550 GTF3C3Q9Y5Q9 886 aa29.32■■■□□ 2.28
MBD3-207ENST00000590550 EEA1Q15075 1411 aa29.26■■■□□ 2.27
MBD3-207ENST00000590550 PEG3Q9GZU2 1588 aa29.23■■■□□ 2.27
MBD3-207ENST00000590550 SYNJ1O43426 1573 aa29.21■■■□□ 2.27
MBD3-207ENST00000590550 ATAD2BQ9ULI0 1458 aa29.2■■■□□ 2.27
MBD3-207ENST00000590550 GOLGA3Q08378 1498 aa29.19■■■□□ 2.26
MBD3-207ENST00000590550 BAZ1BQ9UIG0 1483 aaKnown RBP29.15■■■□□ 2.26
MBD3-207ENST00000590550 RANGAP1P46060 587 aaPredicted RBP29.12■■■□□ 2.25
MBD3-207ENST00000590550 CENPBP07199 599 aaPredicted RBP29.01■■■□□ 2.24
MBD3-207ENST00000590550 CEP164Q9UPV0 1460 aa29■■■□□ 2.23
MBD3-207ENST00000590550 CLIP1P30622 1438 aa28.95■■■□□ 2.22
MBD3-207ENST00000590550 HNRNPUL2Q1KMD3 747 aaKnown RBP28.93■■■□□ 2.22
MBD3-207ENST00000590550 RAPGEF2Q9Y4G8 1499 aa28.93■■■□□ 2.22
MBD3-207ENST00000590550 KIF21BO75037 1637 aa28.9■■■□□ 2.22
MBD3-207ENST00000590550 DIEXFQ68CQ4 756 aaKnown RBP28.87■■■□□ 2.21
MBD3-207ENST00000590550 VPS8Q8N3P4 1428 aa28.76■■■□□ 2.2
MBD3-207ENST00000590550 APLP2Q06481 763 aa28.74■■■□□ 2.19
MBD3-207ENST00000590550 TOP2BQ02880 1626 aa28.73■■■□□ 2.19
MBD3-207ENST00000590550 ZNF316A6NFI3 1004 aaPredicted RBP28.59■■■□□ 2.17
MBD3-207ENST00000590550 YTHDC1Q96MU7 727 aaKnown RBP28.58■■■□□ 2.17
MBD3-207ENST00000590550 BIVM-ERCC5R4GMW8 1640 aa28.57■■■□□ 2.16
MBD3-207ENST00000590550 NCAPD3P42695 1498 aa28.55■■■□□ 2.16
MBD3-207ENST00000590550 CUX1P39880 1505 aa28.54■■■□□ 2.16
MBD3-207ENST00000590550 PRXQ9BXM0 1461 aa28.51■■■□□ 2.15
MBD3-207ENST00000590550 HMGXB3Q12766 1538 aa28.48■■■□□ 2.15
MBD3-207ENST00000590550 KANK4Q5T7N3 995 aaPredicted RBP28.47■■■□□ 2.15
MBD3-207ENST00000590550 ARAP1Q96P48 1450 aa28.44■■■□□ 2.14
MBD3-207ENST00000590550 ERICH3Q5RHP9 1530 aa28.41■■■□□ 2.14
MBD3-207ENST00000590550 KIF27Q86VH2 1401 aa28.39■■■□□ 2.14
MBD3-207ENST00000590550 CFTRP13569 1480 aa28.38■■■□□ 2.13
MBD3-207ENST00000590550 MIER1Q8N108 512 aa28.3■■■□□ 2.12
MBD3-207ENST00000590550 ITGAEP38570 1179 aa28.22■■■□□ 2.11
MBD3-207ENST00000590550 ARHGAP35Q9NRY4 1499 aa28.2■■■□□ 2.1
MBD3-207ENST00000590550 CUX2O14529 1486 aa28.19■■■□□ 2.1
MBD3-207ENST00000590550 DHX57Q6P158 1386 aaKnown RBP28.18■■■□□ 2.1
MBD3-207ENST00000590550 BCL11AQ9H165 835 aa28.17■■■□□ 2.1
MBD3-207ENST00000590550 IGF1RP08069 1367 aa28.13■■■□□ 2.09
MBD3-207ENST00000590550 CADPSQ9ULU8 1353 aa28.09■■■□□ 2.09
MBD3-207ENST00000590550 RRBP1Q9P2E9 1410 aaKnown RBP28.06■■■□□ 2.08
MBD3-207ENST00000590550 FGD5Q6ZNL6 1462 aa28.04■■■□□ 2.08
MBD3-207ENST00000590550 CCNB3Q8WWL7 1395 aa28.03■■■□□ 2.08
MBD3-207ENST00000590550 CARMIL1Q5VZK9 1371 aa28.02■■■□□ 2.08
MBD3-207ENST00000590550 P3H3Q8IVL6 736 aa28.02■■■□□ 2.08
MBD3-207ENST00000590550 PRDM2Q13029 1718 aa27.98■■■□□ 2.07
MBD3-207ENST00000590550 CLSPNQ9HAW4 1339 aa27.96■■■□□ 2.07
MBD3-207ENST00000590550 ATP1B4Q9UN42 357 aaPredicted RBP27.94■■■□□ 2.06
MBD3-207ENST00000590550 ANP32EQ9BTT0 268 aa27.93■■■□□ 2.06
MBD3-207ENST00000590550 CC2D2AQ9P2K1 1620 aa27.9■■■□□ 2.06
MBD3-207ENST00000590550 FANCD2Q9BXW9 1451 aa27.85■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms