RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 NISCHQ9Y2I1 1504 aa44.41■■■■■ 4.7
CCDC88B-203ENST00000359902 CCDC180Q9P1Z9 1646 aa38.02■■■■□ 3.68
CCDC88B-203ENST00000359902 ZCCHC6Q5VYS8 1495 aaKnown RBP37.5■■■■□ 3.59
CCDC88B-203ENST00000359902 SHROOM4Q9ULL8 1493 aa37.32■■■■□ 3.56
CCDC88B-203ENST00000359902 DCAF8L2P0C7V8 631 aa36.67■■■■□ 3.46
CCDC88B-203ENST00000359902 DCAF1Q9Y4B6 1507 aa36.56■■■■□ 3.44
CCDC88B-203ENST00000359902 SUPT5HO00267 1087 aaKnown RBP36.45■■■■□ 3.42
CCDC88B-203ENST00000359902 MYO15BQ96JP2 1530 aa35.68■■■■□ 3.3
CCDC88B-203ENST00000359902 SCRIBQ14160 1630 aa35.38■■■■□ 3.25
CCDC88B-203ENST00000359902 CHIC1Q5VXU3 224 aa35.38■■■■□ 3.25
CCDC88B-203ENST00000359902 ABCC9O60706 1549 aa35.33■■■■□ 3.25
CCDC88B-203ENST00000359902 NACADO15069 1562 aa35.23■■■■□ 3.23
CCDC88B-203ENST00000359902 RSF1Q96T23 1441 aaPredicted RBP34.96■■■■□ 3.19
CCDC88B-203ENST00000359902 RB1CC1Q8TDY2 1594 aa34.69■■■■□ 3.14
CCDC88B-203ENST00000359902 CECR2Q9BXF3 1484 aa34.58■■■■□ 3.13
CCDC88B-203ENST00000359902 MROH2BQ7Z745 1585 aa34.45■■■■□ 3.11
CCDC88B-203ENST00000359902 WIZO95785 1651 aa34.23■■■■□ 3.07
CCDC88B-203ENST00000359902 LOC105371045A0A1W2PR82 267 aa34.21■■■■□ 3.07
CCDC88B-203ENST00000359902 BAZ1AQ9NRL2 1556 aaPredicted RBP34.15■■■■□ 3.06
CCDC88B-203ENST00000359902 UNC13AQ9UPW8 1703 aa34.12■■■■□ 3.05
CCDC88B-203ENST00000359902 TRIM41Q8WV44 630 aa34.07■■■■□ 3.04
CCDC88B-203ENST00000359902 SMARCA4P51532 1647 aa33.89■■■■□ 3.02
CCDC88B-203ENST00000359902 PCGF6Q9BYE7 350 aa33.76■■■■□ 3
CCDC88B-203ENST00000359902 TOP2AP11388 1531 aaKnown RBP33.76■■■■□ 3
CCDC88B-203ENST00000359902 BICRAQ9NZM4 1560 aa33.75■■■□□ 2.99
CCDC88B-203ENST00000359902 EIF4G1Q04637 1599 aaKnown RBP33.68■■■□□ 2.98
CCDC88B-203ENST00000359902 PABPN1Q86U42 306 aaKnown RBP eCLIP33.67■■■□□ 2.98
CCDC88B-203ENST00000359902 FAM9AQ8IZU1 332 aaPredicted RBP33.64■■■□□ 2.98
CCDC88B-203ENST00000359902 HRCP23327 699 aa33.59■■■□□ 2.97
CCDC88B-203ENST00000359902 CCDC88BA6NC98 1476 aa33.58■■■□□ 2.97
CCDC88B-203ENST00000359902 SMARCA2P51531 1590 aa33.54■■■□□ 2.96
CCDC88B-203ENST00000359902 PEG3Q9GZU2 1588 aa33.35■■■□□ 2.93
CCDC88B-203ENST00000359902 TRIM26Q12899 539 aaPredicted RBP33.34■■■□□ 2.93
CCDC88B-203ENST00000359902 ABCC8Q09428 1581 aa33.27■■■□□ 2.92
CCDC88B-203ENST00000359902 EHMT2Q96KQ7 1210 aa33.25■■■□□ 2.91
CCDC88B-203ENST00000359902 ATAD2BQ9ULI0 1458 aa33.12■■■□□ 2.89
CCDC88B-203ENST00000359902 BAZ1BQ9UIG0 1483 aaKnown RBP32.97■■■□□ 2.87
CCDC88B-203ENST00000359902 SOGA1O94964 1423 aa32.91■■■□□ 2.86
CCDC88B-203ENST00000359902 WRNQ14191 1432 aaPredicted RBP eCLIP32.84■■■□□ 2.85
CCDC88B-203ENST00000359902 PPARGC1BQ86YN6 1023 aaKnown RBP32.82■■■□□ 2.84
CCDC88B-203ENST00000359902 EEA1Q15075 1411 aa32.81■■■□□ 2.84
CCDC88B-203ENST00000359902 RUSC2Q8N2Y8 1516 aa32.75■■■□□ 2.83
CCDC88B-203ENST00000359902 CSRNP3Q8WYN3 585 aa32.73■■■□□ 2.83
CCDC88B-203ENST00000359902 SYNJ1O43426 1573 aa32.68■■■□□ 2.82
CCDC88B-203ENST00000359902 TNIKQ9UKE5 1360 aa32.64■■■□□ 2.82
CCDC88B-203ENST00000359902 CEP162Q5TB80 1403 aa32.59■■■□□ 2.81
CCDC88B-203ENST00000359902 NCAPD3P42695 1498 aa32.59■■■□□ 2.81
CCDC88B-203ENST00000359902 HMGXB3Q12766 1538 aa32.56■■■□□ 2.8
CCDC88B-203ENST00000359902 GOLGA3Q08378 1498 aa32.5■■■□□ 2.79
CCDC88B-203ENST00000359902 UBTFP17480 764 aaKnown RBP32.48■■■□□ 2.79
CCDC88B-203ENST00000359902 ZEB1P37275 1124 aaPredicted RBP32.48■■■□□ 2.79
CCDC88B-203ENST00000359902 TOP2BQ02880 1626 aa32.37■■■□□ 2.77
CCDC88B-203ENST00000359902 CEP164Q9UPV0 1460 aa32.37■■■□□ 2.77
CCDC88B-203ENST00000359902 KIF21BO75037 1637 aa32.36■■■□□ 2.77
CCDC88B-203ENST00000359902 BIVM-ERCC5R4GMW8 1640 aa32.28■■■□□ 2.76
CCDC88B-203ENST00000359902 CFTRP13569 1480 aa32.2■■■□□ 2.74
CCDC88B-203ENST00000359902 RAPGEF2Q9Y4G8 1499 aa32.14■■■□□ 2.74
CCDC88B-203ENST00000359902 CUX1P39880 1505 aa32.11■■■□□ 2.73
CCDC88B-203ENST00000359902 TTBK1Q5TCY1 1321 aaPredicted RBP32.09■■■□□ 2.73
CCDC88B-203ENST00000359902 CLIP1P30622 1438 aa32.08■■■□□ 2.73
CCDC88B-203ENST00000359902 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.98■■■□□ 2.71
CCDC88B-203ENST00000359902 PRXQ9BXM0 1461 aa31.95■■■□□ 2.71
CCDC88B-203ENST00000359902 PRDM2Q13029 1718 aa31.94■■■□□ 2.7
CCDC88B-203ENST00000359902 ERICH3Q5RHP9 1530 aa31.92■■■□□ 2.7
CCDC88B-203ENST00000359902 VPS8Q8N3P4 1428 aa31.92■■■□□ 2.7
CCDC88B-203ENST00000359902 CCER1Q8TC90 406 aaPredicted RBP31.9■■■□□ 2.7
CCDC88B-203ENST00000359902 CADPSQ9ULU8 1353 aa31.89■■■□□ 2.7
CCDC88B-203ENST00000359902 CC2D2AQ9P2K1 1620 aa31.89■■■□□ 2.7
CCDC88B-203ENST00000359902 KIF27Q86VH2 1401 aa31.88■■■□□ 2.69
CCDC88B-203ENST00000359902 RANGAP1P46060 587 aaPredicted RBP31.78■■■□□ 2.68
CCDC88B-203ENST00000359902 APLP2Q06481 763 aa31.69■■■□□ 2.66
CCDC88B-203ENST00000359902 ARAP1Q96P48 1450 aa31.63■■■□□ 2.65
CCDC88B-203ENST00000359902 CUX2O14529 1486 aa31.61■■■□□ 2.65
CCDC88B-203ENST00000359902 FGD5Q6ZNL6 1462 aa31.58■■■□□ 2.65
CCDC88B-203ENST00000359902 IGF1RP08069 1367 aa31.58■■■□□ 2.65
CCDC88B-203ENST00000359902 FANCD2Q9BXW9 1451 aa31.55■■■□□ 2.64
CCDC88B-203ENST00000359902 HNRNPUL2Q1KMD3 747 aaKnown RBP31.48■■■□□ 2.63
CCDC88B-203ENST00000359902 ARHGAP35Q9NRY4 1499 aa31.43■■■□□ 2.62
CCDC88B-203ENST00000359902 CARMIL1Q5VZK9 1371 aa31.42■■■□□ 2.62
CCDC88B-203ENST00000359902 NESP48681 1621 aa31.39■■■□□ 2.62
CCDC88B-203ENST00000359902 DNMBPQ6XZF7 1577 aa31.38■■■□□ 2.61
CCDC88B-203ENST00000359902 KANK4Q5T7N3 995 aaPredicted RBP31.35■■■□□ 2.61
CCDC88B-203ENST00000359902 TOPBP1Q92547 1522 aa31.32■■■□□ 2.6
CCDC88B-203ENST00000359902 RAD54L2Q9Y4B4 1467 aa31.28■■■□□ 2.6
CCDC88B-203ENST00000359902 POLA1P09884 1462 aaPredicted RBP31.27■■■□□ 2.6
CCDC88B-203ENST00000359902 ABCA10Q8WWZ4 1543 aa31.26■■■□□ 2.6
CCDC88B-203ENST00000359902 LAMC3Q9Y6N6 1575 aa31.24■■■□□ 2.59
CCDC88B-203ENST00000359902 RRBP1Q9P2E9 1410 aaKnown RBP31.15■■■□□ 2.58
CCDC88B-203ENST00000359902 URB2Q14146 1524 aaKnown RBP31.12■■■□□ 2.57
CCDC88B-203ENST00000359902 DNAJC5BQ9UF47 199 aa31.08■■■□□ 2.57
CCDC88B-203ENST00000359902 MAP3K1Q13233 1512 aa31.07■■■□□ 2.56
CCDC88B-203ENST00000359902 DIEXFQ68CQ4 756 aaKnown RBP31.06■■■□□ 2.56
CCDC88B-203ENST00000359902 CUL7Q14999 1698 aa31.04■■■□□ 2.56
CCDC88B-203ENST00000359902 TIAM1Q13009 1591 aa31.03■■■□□ 2.56
CCDC88B-203ENST00000359902 PDS5BQ9NTI5 1447 aa31.03■■■□□ 2.56
CCDC88B-203ENST00000359902 WDR97A6NE52 1622 aa31.01■■■□□ 2.55
CCDC88B-203ENST00000359902 CCNB3Q8WWL7 1395 aa31■■■□□ 2.55
CCDC88B-203ENST00000359902 ZNF316A6NFI3 1004 aaPredicted RBP30.99■■■□□ 2.55
CCDC88B-203ENST00000359902 FHAD1B1AJZ9 1412 aa30.99■■■□□ 2.55
CCDC88B-203ENST00000359902 P3H3Q8IVL6 736 aa30.93■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms