RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 NISCHQ9Y2I1 1504 aa41.99■■■■■ 4.31
SHKBP1-225ENST00000600733 SHROOM4Q9ULL8 1493 aa35.85■■■■□ 3.33
SHKBP1-225ENST00000600733 CCDC180Q9P1Z9 1646 aa35.68■■■■□ 3.3
SHKBP1-225ENST00000600733 ZCCHC6Q5VYS8 1495 aaKnown RBP35.53■■■■□ 3.28
SHKBP1-225ENST00000600733 SUPT5HO00267 1087 aaKnown RBP35.16■■■■□ 3.22
SHKBP1-225ENST00000600733 DCAF8L2P0C7V8 631 aa34.81■■■■□ 3.16
SHKBP1-225ENST00000600733 DCAF1Q9Y4B6 1507 aa34.42■■■■□ 3.1
SHKBP1-225ENST00000600733 CHIC1Q5VXU3 224 aa34.19■■■■□ 3.06
SHKBP1-225ENST00000600733 MYO15BQ96JP2 1530 aa34.12■■■■□ 3.05
SHKBP1-225ENST00000600733 ABCC9O60706 1549 aa33.54■■■□□ 2.96
SHKBP1-225ENST00000600733 SCRIBQ14160 1630 aa33.49■■■□□ 2.95
SHKBP1-225ENST00000600733 RSF1Q96T23 1441 aaPredicted RBP33.25■■■□□ 2.91
SHKBP1-225ENST00000600733 LOC105371045A0A1W2PR82 267 aa33.2■■■□□ 2.91
SHKBP1-225ENST00000600733 HRCP23327 699 aa33.18■■■□□ 2.9
SHKBP1-225ENST00000600733 PCGF6Q9BYE7 350 aa33.18■■■□□ 2.9
SHKBP1-225ENST00000600733 NACADO15069 1562 aa32.96■■■□□ 2.87
SHKBP1-225ENST00000600733 RB1CC1Q8TDY2 1594 aa32.94■■■□□ 2.86
SHKBP1-225ENST00000600733 CECR2Q9BXF3 1484 aa32.77■■■□□ 2.84
SHKBP1-225ENST00000600733 TRIM41Q8WV44 630 aa32.72■■■□□ 2.83
SHKBP1-225ENST00000600733 MROH2BQ7Z745 1585 aa32.67■■■□□ 2.82
SHKBP1-225ENST00000600733 PPARGC1BQ86YN6 1023 aaKnown RBP32.53■■■□□ 2.8
SHKBP1-225ENST00000600733 WIZO95785 1651 aa32.51■■■□□ 2.8
SHKBP1-225ENST00000600733 TRIM26Q12899 539 aaPredicted RBP32.51■■■□□ 2.8
SHKBP1-225ENST00000600733 FAM9AQ8IZU1 332 aaPredicted RBP32.49■■■□□ 2.79
SHKBP1-225ENST00000600733 BAZ1AQ9NRL2 1556 aaPredicted RBP32.28■■■□□ 2.76
SHKBP1-225ENST00000600733 EHMT2Q96KQ7 1210 aa32.24■■■□□ 2.75
SHKBP1-225ENST00000600733 EIF4G1Q04637 1599 aaKnown RBP32.08■■■□□ 2.73
SHKBP1-225ENST00000600733 UNC13AQ9UPW8 1703 aa32.02■■■□□ 2.72
SHKBP1-225ENST00000600733 SMARCA4P51532 1647 aa31.99■■■□□ 2.71
SHKBP1-225ENST00000600733 TOP2AP11388 1531 aaKnown RBP31.96■■■□□ 2.71
SHKBP1-225ENST00000600733 CCDC88BA6NC98 1476 aa31.84■■■□□ 2.69
SHKBP1-225ENST00000600733 SMARCA2P51531 1590 aa31.81■■■□□ 2.68
SHKBP1-225ENST00000600733 ABCC8Q09428 1581 aa31.8■■■□□ 2.68
SHKBP1-225ENST00000600733 ZEB1P37275 1124 aaPredicted RBP31.77■■■□□ 2.68
SHKBP1-225ENST00000600733 PABPN1Q86U42 306 aaKnown RBP eCLIP31.61■■■□□ 2.65
SHKBP1-225ENST00000600733 BICRAQ9NZM4 1560 aa31.59■■■□□ 2.65
SHKBP1-225ENST00000600733 SOGA1O94964 1423 aa31.49■■■□□ 2.63
SHKBP1-225ENST00000600733 CEP162Q5TB80 1403 aa31.36■■■□□ 2.61
SHKBP1-225ENST00000600733 PEG3Q9GZU2 1588 aa31.35■■■□□ 2.61
SHKBP1-225ENST00000600733 RUSC2Q8N2Y8 1516 aa31.35■■■□□ 2.61
SHKBP1-225ENST00000600733 WRNQ14191 1432 aaPredicted RBP eCLIP31.31■■■□□ 2.6
SHKBP1-225ENST00000600733 EEA1Q15075 1411 aa31.28■■■□□ 2.6
SHKBP1-225ENST00000600733 CSRNP3Q8WYN3 585 aa31.28■■■□□ 2.6
SHKBP1-225ENST00000600733 TNIKQ9UKE5 1360 aa31.27■■■□□ 2.6
SHKBP1-225ENST00000600733 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.25■■■□□ 2.59
SHKBP1-225ENST00000600733 TTBK1Q5TCY1 1321 aaPredicted RBP31.21■■■□□ 2.59
SHKBP1-225ENST00000600733 UBTFP17480 764 aaKnown RBP31.18■■■□□ 2.58
SHKBP1-225ENST00000600733 CCER1Q8TC90 406 aaPredicted RBP31.14■■■□□ 2.58
SHKBP1-225ENST00000600733 ATAD2BQ9ULI0 1458 aa31.14■■■□□ 2.58
SHKBP1-225ENST00000600733 SYNJ1O43426 1573 aa31.1■■■□□ 2.57
SHKBP1-225ENST00000600733 GOLGA3Q08378 1498 aa31.1■■■□□ 2.57
SHKBP1-225ENST00000600733 BAZ1BQ9UIG0 1483 aaKnown RBP31.06■■■□□ 2.56
SHKBP1-225ENST00000600733 CEP164Q9UPV0 1460 aa30.92■■■□□ 2.54
SHKBP1-225ENST00000600733 KIF21BO75037 1637 aa30.9■■■□□ 2.54
SHKBP1-225ENST00000600733 CLIP1P30622 1438 aa30.76■■■□□ 2.51
SHKBP1-225ENST00000600733 RAPGEF2Q9Y4G8 1499 aa30.73■■■□□ 2.51
SHKBP1-225ENST00000600733 TOP2BQ02880 1626 aa30.7■■■□□ 2.5
SHKBP1-225ENST00000600733 VPS8Q8N3P4 1428 aa30.62■■■□□ 2.49
SHKBP1-225ENST00000600733 SCAF1Q9H7N4 1312 aaKnown RBP30.6■■■□□ 2.49
SHKBP1-225ENST00000600733 BIVM-ERCC5R4GMW8 1640 aa30.58■■■□□ 2.49
SHKBP1-225ENST00000600733 RANGAP1P46060 587 aaPredicted RBP30.58■■■□□ 2.49
SHKBP1-225ENST00000600733 DIEXFQ68CQ4 756 aaKnown RBP30.54■■■□□ 2.48
SHKBP1-225ENST00000600733 HNRNPUL2Q1KMD3 747 aaKnown RBP30.52■■■□□ 2.48
SHKBP1-225ENST00000600733 HMGXB3Q12766 1538 aa30.51■■■□□ 2.48
SHKBP1-225ENST00000600733 NCAPD3P42695 1498 aa30.51■■■□□ 2.47
SHKBP1-225ENST00000600733 APLP2Q06481 763 aa30.46■■■□□ 2.47
SHKBP1-225ENST00000600733 CUX1P39880 1505 aa30.41■■■□□ 2.46
SHKBP1-225ENST00000600733 PRXQ9BXM0 1461 aa30.4■■■□□ 2.46
SHKBP1-225ENST00000600733 ERICH3Q5RHP9 1530 aa30.39■■■□□ 2.45
SHKBP1-225ENST00000600733 ZNF316A6NFI3 1004 aaPredicted RBP30.3■■■□□ 2.44
SHKBP1-225ENST00000600733 CFTRP13569 1480 aa30.29■■■□□ 2.44
SHKBP1-225ENST00000600733 ACIN1Q9UKV3 1341 aaKnown RBP30.29■■■□□ 2.44
SHKBP1-225ENST00000600733 NEUROD1Q13562 356 aa30.27■■■□□ 2.44
SHKBP1-225ENST00000600733 ARAP1Q96P48 1450 aa30.27■■■□□ 2.44
SHKBP1-225ENST00000600733 KIF27Q86VH2 1401 aa30.24■■■□□ 2.43
SHKBP1-225ENST00000600733 KANK4Q5T7N3 995 aaPredicted RBP30.12■■■□□ 2.41
SHKBP1-225ENST00000600733 CENPBP07199 599 aaPredicted RBP30.1■■■□□ 2.41
SHKBP1-225ENST00000600733 PRDM2Q13029 1718 aa30.07■■■□□ 2.4
SHKBP1-225ENST00000600733 ARHGAP35Q9NRY4 1499 aa30.01■■■□□ 2.39
SHKBP1-225ENST00000600733 CUX2O14529 1486 aa29.97■■■□□ 2.39
SHKBP1-225ENST00000600733 GTF3C3Q9Y5Q9 886 aa29.96■■■□□ 2.39
SHKBP1-225ENST00000600733 CADPSQ9ULU8 1353 aa29.94■■■□□ 2.38
SHKBP1-225ENST00000600733 DHX57Q6P158 1386 aaKnown RBP29.92■■■□□ 2.38
SHKBP1-225ENST00000600733 IGF1RP08069 1367 aa29.92■■■□□ 2.38
SHKBP1-225ENST00000600733 RRBP1Q9P2E9 1410 aaKnown RBP29.92■■■□□ 2.38
SHKBP1-225ENST00000600733 MIER1Q8N108 512 aa29.89■■■□□ 2.38
SHKBP1-225ENST00000600733 PELP1Q8IZL8 1130 aaKnown RBP29.87■■■□□ 2.37
SHKBP1-225ENST00000600733 FGD5Q6ZNL6 1462 aa29.85■■■□□ 2.37
SHKBP1-225ENST00000600733 CLSPNQ9HAW4 1339 aa29.85■■■□□ 2.37
SHKBP1-225ENST00000600733 YTHDC1Q96MU7 727 aaKnown RBP29.84■■■□□ 2.37
SHKBP1-225ENST00000600733 CARMIL1Q5VZK9 1371 aa29.79■■■□□ 2.36
SHKBP1-225ENST00000600733 CCNB3Q8WWL7 1395 aa29.79■■■□□ 2.36
SHKBP1-225ENST00000600733 CC2D2AQ9P2K1 1620 aa29.75■■■□□ 2.35
SHKBP1-225ENST00000600733 ITGAEP38570 1179 aa29.71■■■□□ 2.35
SHKBP1-225ENST00000600733 TIAM1Q13009 1591 aa29.68■■■□□ 2.34
SHKBP1-225ENST00000600733 FANCD2Q9BXW9 1451 aa29.67■■■□□ 2.34
SHKBP1-225ENST00000600733 MAP3K1Q13233 1512 aa29.62■■■□□ 2.33
SHKBP1-225ENST00000600733 LRRC9Q6ZRR7 1453 aa29.57■■■□□ 2.32
SHKBP1-225ENST00000600733 RAD54L2Q9Y4B4 1467 aa29.56■■■□□ 2.32
SHKBP1-225ENST00000600733 P3H3Q8IVL6 736 aa29.55■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms