Protein–RNA interactions for Protein: P04085

PDGFA, Platelet-derived growth factor subunit A, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFAP04085 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC31.85■■■□□ 2.69
PDGFAP04085 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC31.53■■■□□ 2.64
PDGFAP04085 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC31.11■■■□□ 2.57
PDGFAP04085 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
PDGFAP04085 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
PDGFAP04085 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC30.61■■■□□ 2.49
PDGFAP04085 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
PDGFAP04085 AL356512.1-201ENST00000607453 1739 ntBASIC30.36■■■□□ 2.45
PDGFAP04085 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC30.22■■■□□ 2.43
PDGFAP04085 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC30.08■■■□□ 2.41
PDGFAP04085 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC30■■■□□ 2.39
PDGFAP04085 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC29.97■■■□□ 2.39
PDGFAP04085 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC29.96■■■□□ 2.39
PDGFAP04085 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
PDGFAP04085 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC29.66■■■□□ 2.34
PDGFAP04085 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC29.64■■■□□ 2.34
PDGFAP04085 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC29.61■■■□□ 2.33
PDGFAP04085 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
PDGFAP04085 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
PDGFAP04085 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
PDGFAP04085 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
PDGFAP04085 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC29.21■■■□□ 2.27
PDGFAP04085 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC29.19■■■□□ 2.26
PDGFAP04085 HES6-203ENST00000409160 1600 ntTSL 2 BASIC29.19■■■□□ 2.26
PDGFAP04085 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
PDGFAP04085 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC29.1■■■□□ 2.25
PDGFAP04085 INO80B-203ENST00000409917 796 ntTSL 2 BASIC29.09■■■□□ 2.25
PDGFAP04085 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
PDGFAP04085 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC29.06■■■□□ 2.24
PDGFAP04085 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC29.04■■■□□ 2.24
PDGFAP04085 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC29.03■■■□□ 2.24
PDGFAP04085 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
PDGFAP04085 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC28.87■■■□□ 2.21
PDGFAP04085 ZNRF2P1-201ENST00000441407 443 ntBASIC28.73■■■□□ 2.19
PDGFAP04085 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC28.72■■■□□ 2.19
PDGFAP04085 AC006077.2-201ENST00000623591 457 ntBASIC28.7■■■□□ 2.18
PDGFAP04085 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC28.62■■■□□ 2.17
PDGFAP04085 AC015813.7-201ENST00000623294 581 ntBASIC28.59■■■□□ 2.17
PDGFAP04085 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
PDGFAP04085 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC28.54■■■□□ 2.16
PDGFAP04085 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC28.53■■■□□ 2.16
PDGFAP04085 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC28.39■■■□□ 2.14
PDGFAP04085 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
PDGFAP04085 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC28.37■■■□□ 2.13
PDGFAP04085 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
PDGFAP04085 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
PDGFAP04085 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC28.16■■■□□ 2.1
PDGFAP04085 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
PDGFAP04085 AP002365.1-201ENST00000603448 772 ntBASIC28.02■■■□□ 2.08
PDGFAP04085 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC28.01■■■□□ 2.07
PDGFAP04085 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
PDGFAP04085 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC27.92■■■□□ 2.06
PDGFAP04085 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC27.87■■■□□ 2.05
PDGFAP04085 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC27.86■■■□□ 2.05
PDGFAP04085 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC27.84■■■□□ 2.05
PDGFAP04085 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC27.83■■■□□ 2.05
PDGFAP04085 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC27.82■■■□□ 2.04
PDGFAP04085 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC27.82■■■□□ 2.04
PDGFAP04085 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
PDGFAP04085 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
PDGFAP04085 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
PDGFAP04085 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
PDGFAP04085 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC27.76■■■□□ 2.03
PDGFAP04085 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC27.76■■■□□ 2.03
PDGFAP04085 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC27.74■■■□□ 2.03
PDGFAP04085 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
PDGFAP04085 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC27.7■■■□□ 2.02
PDGFAP04085 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC27.66■■■□□ 2.02
PDGFAP04085 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
PDGFAP04085 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
PDGFAP04085 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
PDGFAP04085 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC27.54■■■□□ 2
PDGFAP04085 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC27.54■■■□□ 2
PDGFAP04085 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC27.53■■■□□ 2
PDGFAP04085 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
PDGFAP04085 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC27.5■■□□□ 1.99
PDGFAP04085 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
PDGFAP04085 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC27.45■■□□□ 1.98
PDGFAP04085 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC27.44■■□□□ 1.98
PDGFAP04085 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
PDGFAP04085 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC27.43■■□□□ 1.98
PDGFAP04085 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
PDGFAP04085 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
PDGFAP04085 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
PDGFAP04085 DYNLL1-208ENST00000550178 581 ntBASIC27.42■■□□□ 1.98
PDGFAP04085 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
PDGFAP04085 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC27.37■■□□□ 1.97
PDGFAP04085 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC27.37■■□□□ 1.97
PDGFAP04085 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC27.35■■□□□ 1.97
PDGFAP04085 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC27.35■■□□□ 1.97
PDGFAP04085 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC27.31■■□□□ 1.96
PDGFAP04085 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
PDGFAP04085 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC27.27■■□□□ 1.96
PDGFAP04085 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
PDGFAP04085 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC27.22■■□□□ 1.95
PDGFAP04085 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
PDGFAP04085 AL031258.1-201ENST00000623562 325 ntBASIC27.21■■□□□ 1.95
PDGFAP04085 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
PDGFAP04085 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC27.18■■□□□ 1.94
PDGFAP04085 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC27.16■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms