RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 NISCHQ9Y2I1 1504 aa34.64■■■■□ 3.14
SMPD1-201ENST00000342245 PELP1Q8IZL8 1130 aaKnown RBP31.47■■■□□ 2.63
SMPD1-201ENST00000342245 HRCP23327 699 aa31.43■■■□□ 2.62
SMPD1-201ENST00000342245 MYT1Q01538 1121 aa30.56■■■□□ 2.48
SMPD1-201ENST00000342245 PPARGC1BQ86YN6 1023 aaKnown RBP30.32■■■□□ 2.44
SMPD1-201ENST00000342245 PCGF6Q9BYE7 350 aa30.29■■■□□ 2.44
SMPD1-201ENST00000342245 MYO15BQ96JP2 1530 aa29.98■■■□□ 2.39
SMPD1-201ENST00000342245 DCAF1Q9Y4B6 1507 aa29.96■■■□□ 2.39
SMPD1-201ENST00000342245 SCAF1Q9H7N4 1312 aaKnown RBP29.86■■■□□ 2.37
SMPD1-201ENST00000342245 SUPT5HO00267 1087 aaKnown RBP29.85■■■□□ 2.37
SMPD1-201ENST00000342245 CHIC1Q5VXU3 224 aa29.79■■■□□ 2.36
SMPD1-201ENST00000342245 ZEB1P37275 1124 aaPredicted RBP29.72■■■□□ 2.35
SMPD1-201ENST00000342245 SHROOM4Q9ULL8 1493 aa29.7■■■□□ 2.34
SMPD1-201ENST00000342245 CCDC180Q9P1Z9 1646 aa29.69■■■□□ 2.34
SMPD1-201ENST00000342245 TRIM26Q12899 539 aaPredicted RBP29.55■■■□□ 2.32
SMPD1-201ENST00000342245 ZCCHC6Q5VYS8 1495 aaKnown RBP29.28■■■□□ 2.28
SMPD1-201ENST00000342245 ACIN1Q9UKV3 1341 aaKnown RBP29.11■■■□□ 2.25
SMPD1-201ENST00000342245 TTBK1Q5TCY1 1321 aaPredicted RBP28.92■■■□□ 2.22
SMPD1-201ENST00000342245 LOC105371045A0A1W2PR82 267 aa28.86■■■□□ 2.21
SMPD1-201ENST00000342245 DCAF8L2P0C7V8 631 aa28.84■■■□□ 2.21
SMPD1-201ENST00000342245 CENPBP07199 599 aaPredicted RBP28.84■■■□□ 2.21
SMPD1-201ENST00000342245 NEUROD1Q13562 356 aa28.83■■■□□ 2.21
SMPD1-201ENST00000342245 GTF3C3Q9Y5Q9 886 aa28.74■■■□□ 2.19
SMPD1-201ENST00000342245 DIEXFQ68CQ4 756 aaKnown RBP28.32■■■□□ 2.12
SMPD1-201ENST00000342245 CCER1Q8TC90 406 aaPredicted RBP28.03■■■□□ 2.08
SMPD1-201ENST00000342245 BCL11AQ9H165 835 aa28■■■□□ 2.07
SMPD1-201ENST00000342245 TRIM41Q8WV44 630 aa27.96■■■□□ 2.07
SMPD1-201ENST00000342245 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.87■■■□□ 2.05
SMPD1-201ENST00000342245 CLSPNQ9HAW4 1339 aa27.85■■■□□ 2.05
SMPD1-201ENST00000342245 ANP32EQ9BTT0 268 aa27.8■■■□□ 2.04
SMPD1-201ENST00000342245 ZNF316A6NFI3 1004 aaPredicted RBP27.77■■■□□ 2.04
SMPD1-201ENST00000342245 FAM9AQ8IZU1 332 aaPredicted RBP27.69■■■□□ 2.02
SMPD1-201ENST00000342245 SCRIBQ14160 1630 aa27.66■■■□□ 2.02
SMPD1-201ENST00000342245 ABCC9O60706 1549 aa27.61■■■□□ 2.01
SMPD1-201ENST00000342245 YTHDC1Q96MU7 727 aaKnown RBP27.59■■■□□ 2.01
SMPD1-201ENST00000342245 MIER1Q8N108 512 aa27.42■■□□□ 1.98
SMPD1-201ENST00000342245 RSF1Q96T23 1441 aaPredicted RBP27.42■■□□□ 1.98
SMPD1-201ENST00000342245 TSHZ2Q9NRE2 1034 aa27.35■■□□□ 1.97
SMPD1-201ENST00000342245 RB1CC1Q8TDY2 1594 aa27.35■■□□□ 1.97
SMPD1-201ENST00000342245 WRNQ14191 1432 aaPredicted RBP eCLIP27.34■■□□□ 1.97
SMPD1-201ENST00000342245 SUPT16HQ9Y5B9 1047 aaKnown RBP27.33■■□□□ 1.97
SMPD1-201ENST00000342245 CSRNP3Q8WYN3 585 aa27.31■■□□□ 1.96
SMPD1-201ENST00000342245 PRKCSHP14314 528 aaPredicted RBP27.24■■□□□ 1.95
SMPD1-201ENST00000342245 NACADO15069 1562 aa27.22■■□□□ 1.95
SMPD1-201ENST00000342245 EHMT2Q96KQ7 1210 aa27.1■■□□□ 1.93
SMPD1-201ENST00000342245 CECR2Q9BXF3 1484 aa27.09■■□□□ 1.93
SMPD1-201ENST00000342245 ERICH6Q7L0X2 663 aa27.04■■□□□ 1.92
SMPD1-201ENST00000342245 MROH2BQ7Z745 1585 aa26.97■■□□□ 1.91
SMPD1-201ENST00000342245 CEP162Q5TB80 1403 aa26.84■■□□□ 1.89
SMPD1-201ENST00000342245 WIZO95785 1651 aa26.81■■□□□ 1.88
SMPD1-201ENST00000342245 TNIKQ9UKE5 1360 aa26.77■■□□□ 1.88
SMPD1-201ENST00000342245 MYT1LQ9UL68 1186 aa26.7■■□□□ 1.86
SMPD1-201ENST00000342245 RBM19Q9Y4C8 960 aaKnown RBP26.65■■□□□ 1.86
SMPD1-201ENST00000342245 EIF4G1Q04637 1599 aaKnown RBP26.61■■□□□ 1.85
SMPD1-201ENST00000342245 APLP2Q06481 763 aa26.6■■□□□ 1.85
SMPD1-201ENST00000342245 BAZ1AQ9NRL2 1556 aaPredicted RBP26.59■■□□□ 1.85
SMPD1-201ENST00000342245 EEA1Q15075 1411 aa26.56■■□□□ 1.84
SMPD1-201ENST00000342245 HNRNPUL2Q1KMD3 747 aaKnown RBP26.47■■□□□ 1.83
SMPD1-201ENST00000342245 FANCIQ9NVI1 1328 aa26.45■■□□□ 1.82
SMPD1-201ENST00000342245 FKBP8Q14318 412 aa26.45■■□□□ 1.82
SMPD1-201ENST00000342245 NEFLP07196 543 aa26.44■■□□□ 1.82
SMPD1-201ENST00000342245 UNC13AQ9UPW8 1703 aa26.42■■□□□ 1.82
SMPD1-201ENST00000342245 MSH5O43196 834 aa26.4■■□□□ 1.82
SMPD1-201ENST00000342245 SMARCA4P51532 1647 aa26.38■■□□□ 1.81
SMPD1-201ENST00000342245 BCANQ96GW7 911 aa26.38■■□□□ 1.81
SMPD1-201ENST00000342245 GOLGA3Q08378 1498 aa26.36■■□□□ 1.81
SMPD1-201ENST00000342245 TOP2AP11388 1531 aaKnown RBP26.35■■□□□ 1.81
SMPD1-201ENST00000342245 CCDC88BA6NC98 1476 aa26.3■■□□□ 1.8
SMPD1-201ENST00000342245 DHX57Q6P158 1386 aaKnown RBP26.28■■□□□ 1.8
SMPD1-201ENST00000342245 UBTFP17480 764 aaKnown RBP26.26■■□□□ 1.79
SMPD1-201ENST00000342245 PABPN1Q86U42 306 aaKnown RBP eCLIP26.26■■□□□ 1.79
SMPD1-201ENST00000342245 ABCC8Q09428 1581 aa26.26■■□□□ 1.79
SMPD1-201ENST00000342245 SMARCA2P51531 1590 aa26.23■■□□□ 1.79
SMPD1-201ENST00000342245 SOGA1O94964 1423 aa26.2■■□□□ 1.78
SMPD1-201ENST00000342245 ERICH6BQ5W0A0 696 aa26.2■■□□□ 1.78
SMPD1-201ENST00000342245 DEKP35659 375 aaKnown RBP26.17■■□□□ 1.78
SMPD1-201ENST00000342245 VPS8Q8N3P4 1428 aa26.17■■□□□ 1.78
SMPD1-201ENST00000342245 BICRAQ9NZM4 1560 aa26.12■■□□□ 1.77
SMPD1-201ENST00000342245 CDK11AQ9UQ88 783 aaPredicted RBP26.1■■□□□ 1.77
SMPD1-201ENST00000342245 KIF21BO75037 1637 aa26.07■■□□□ 1.76
SMPD1-201ENST00000342245 CEP164Q9UPV0 1460 aa26.07■■□□□ 1.76
SMPD1-201ENST00000342245 CLIP1P30622 1438 aa26.07■■□□□ 1.76
SMPD1-201ENST00000342245 KCNH8Q96L42 1107 aa26.06■■□□□ 1.76
SMPD1-201ENST00000342245 ANO8Q9HCE9 1232 aaPredicted RBP26.06■■□□□ 1.76
SMPD1-201ENST00000342245 CCER2I3L3R5 266 aa26.03■■□□□ 1.76
SMPD1-201ENST00000342245 ITGAEP38570 1179 aa26■■□□□ 1.75
SMPD1-201ENST00000342245 CUX2O14529 1486 aa25.98■■□□□ 1.75
SMPD1-201ENST00000342245 BAZ1BQ9UIG0 1483 aaKnown RBP25.97■■□□□ 1.75
SMPD1-201ENST00000342245 RUSC2Q8N2Y8 1516 aa25.95■■□□□ 1.74
SMPD1-201ENST00000342245 UBE2Q2Q8WVN8 375 aa25.83■■□□□ 1.73
SMPD1-201ENST00000342245 PEG3Q9GZU2 1588 aa25.83■■□□□ 1.73
SMPD1-201ENST00000342245 RRBP1Q9P2E9 1410 aaKnown RBP25.8■■□□□ 1.72
SMPD1-201ENST00000342245 SALL2Q9Y467 1007 aaPredicted RBP25.79■■□□□ 1.72
SMPD1-201ENST00000342245 PPP1R15AO75807 674 aaPredicted RBP25.78■■□□□ 1.72
SMPD1-201ENST00000342245 ANP32CO43423 234 aa25.77■■□□□ 1.72
SMPD1-201ENST00000342245 DDX10Q13206 875 aaKnown RBP25.76■■□□□ 1.71
SMPD1-201ENST00000342245 ATAD2BQ9ULI0 1458 aa25.74■■□□□ 1.71
SMPD1-201ENST00000342245 TRIM52Q96A61 297 aa25.74■■□□□ 1.71
SMPD1-201ENST00000342245 NOP58Q9Y2X3 529 aaKnown RBP25.74■■□□□ 1.71
SMPD1-201ENST00000342245 PPP4R2Q9NY27 417 aa25.69■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms