RNA–Protein interactions for RNA: ENST00000359889.9

FAM3A-202, Transcript of family with sequence similarity 3 member A, humanhuman

APPRIS P1 TSL 2 BASIC

Gene FAM3A, Length 1,712 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3A-202ENST00000359889 NISCHQ9Y2I1 1504 aa46.84■■■■■ 5.09
FAM3A-202ENST00000359889 CCDC180Q9P1Z9 1646 aa40.71■■■■■ 4.11
FAM3A-202ENST00000359889 ZCCHC6Q5VYS8 1495 aaKnown RBP39.37■■■■□ 3.89
FAM3A-202ENST00000359889 DCAF8L2P0C7V8 631 aa38.77■■■■□ 3.8
FAM3A-202ENST00000359889 DCAF1Q9Y4B6 1507 aa38.75■■■■□ 3.79
FAM3A-202ENST00000359889 ABCC9O60706 1549 aa38.39■■■■□ 3.74
FAM3A-202ENST00000359889 SHROOM4Q9ULL8 1493 aa38.37■■■■□ 3.73
FAM3A-202ENST00000359889 MYO15BQ96JP2 1530 aa38.24■■■■□ 3.71
FAM3A-202ENST00000359889 NACADO15069 1562 aa37.95■■■■□ 3.67
FAM3A-202ENST00000359889 RB1CC1Q8TDY2 1594 aa37.58■■■■□ 3.61
FAM3A-202ENST00000359889 SCRIBQ14160 1630 aa37.47■■■■□ 3.59
FAM3A-202ENST00000359889 SUPT5HO00267 1087 aaKnown RBP37.08■■■■□ 3.53
FAM3A-202ENST00000359889 UNC13AQ9UPW8 1703 aa36.58■■■■□ 3.45
FAM3A-202ENST00000359889 RSF1Q96T23 1441 aaPredicted RBP36.42■■■■□ 3.42
FAM3A-202ENST00000359889 CECR2Q9BXF3 1484 aa36.34■■■■□ 3.41
FAM3A-202ENST00000359889 BICRAQ9NZM4 1560 aa36.31■■■■□ 3.4
FAM3A-202ENST00000359889 PABPN1Q86U42 306 aaKnown RBP eCLIP36.28■■■■□ 3.4
FAM3A-202ENST00000359889 BAZ1AQ9NRL2 1556 aaPredicted RBP36.19■■■■□ 3.38
FAM3A-202ENST00000359889 MROH2BQ7Z745 1585 aa36.15■■■■□ 3.38
FAM3A-202ENST00000359889 SMARCA4P51532 1647 aa35.93■■■■□ 3.34
FAM3A-202ENST00000359889 WIZO95785 1651 aa35.82■■■■□ 3.32
FAM3A-202ENST00000359889 CHIC1Q5VXU3 224 aa35.55■■■■□ 3.28
FAM3A-202ENST00000359889 TOP2AP11388 1531 aaKnown RBP35.55■■■■□ 3.28
FAM3A-202ENST00000359889 PEG3Q9GZU2 1588 aa35.49■■■■□ 3.27
FAM3A-202ENST00000359889 SMARCA2P51531 1590 aa35.37■■■■□ 3.25
FAM3A-202ENST00000359889 ATAD2BQ9ULI0 1458 aa35.34■■■■□ 3.25
FAM3A-202ENST00000359889 EIF4G1Q04637 1599 aaKnown RBP35.27■■■■□ 3.24
FAM3A-202ENST00000359889 BAZ1BQ9UIG0 1483 aaKnown RBP35.2■■■■□ 3.23
FAM3A-202ENST00000359889 CCDC88BA6NC98 1476 aa35.18■■■■□ 3.22
FAM3A-202ENST00000359889 NCAPD3P42695 1498 aa35.04■■■■□ 3.2
FAM3A-202ENST00000359889 HMGXB3Q12766 1538 aa34.96■■■■□ 3.19
FAM3A-202ENST00000359889 TRIM41Q8WV44 630 aa34.91■■■■□ 3.18
FAM3A-202ENST00000359889 CC2D2AQ9P2K1 1620 aa34.69■■■■□ 3.14
FAM3A-202ENST00000359889 ABCC8Q09428 1581 aa34.44■■■■□ 3.1
FAM3A-202ENST00000359889 WRNQ14191 1432 aaPredicted RBP eCLIP34.33■■■■□ 3.09
FAM3A-202ENST00000359889 CFTRP13569 1480 aa34.3■■■■□ 3.08
FAM3A-202ENST00000359889 FAM9AQ8IZU1 332 aaPredicted RBP34.22■■■■□ 3.07
FAM3A-202ENST00000359889 CADPSQ9ULU8 1353 aa34.19■■■■□ 3.06
FAM3A-202ENST00000359889 LOC105371045A0A1W2PR82 267 aa34.18■■■■□ 3.06
FAM3A-202ENST00000359889 SYNJ1O43426 1573 aa34.05■■■■□ 3.04
FAM3A-202ENST00000359889 EEA1Q15075 1411 aa34.01■■■■□ 3.03
FAM3A-202ENST00000359889 PRDM2Q13029 1718 aa33.96■■■■□ 3.03
FAM3A-202ENST00000359889 TOP2BQ02880 1626 aa33.94■■■■□ 3.02
FAM3A-202ENST00000359889 SOGA1O94964 1423 aa33.89■■■■□ 3.02
FAM3A-202ENST00000359889 BIVM-ERCC5R4GMW8 1640 aa33.87■■■■□ 3.01
FAM3A-202ENST00000359889 CUX1P39880 1505 aa33.8■■■■□ 3
FAM3A-202ENST00000359889 CSRNP3Q8WYN3 585 aa33.79■■■■□ 3
FAM3A-202ENST00000359889 LAMC3Q9Y6N6 1575 aa33.79■■■■□ 3
FAM3A-202ENST00000359889 FANCD2Q9BXW9 1451 aa33.78■■■■□ 3
FAM3A-202ENST00000359889 NESP48681 1621 aa33.7■■■□□ 2.99
FAM3A-202ENST00000359889 RUSC2Q8N2Y8 1516 aa33.7■■■□□ 2.98
FAM3A-202ENST00000359889 EHMT2Q96KQ7 1210 aa33.7■■■□□ 2.98
FAM3A-202ENST00000359889 DNAJC5BQ9UF47 199 aa33.7■■■□□ 2.98
FAM3A-202ENST00000359889 PDS5BQ9NTI5 1447 aa33.62■■■□□ 2.97
FAM3A-202ENST00000359889 CEP164Q9UPV0 1460 aa33.56■■■□□ 2.96
FAM3A-202ENST00000359889 GOLGA3Q08378 1498 aa33.5■■■□□ 2.95
FAM3A-202ENST00000359889 KIF27Q86VH2 1401 aa33.49■■■□□ 2.95
FAM3A-202ENST00000359889 DNMBPQ6XZF7 1577 aa33.48■■■□□ 2.95
FAM3A-202ENST00000359889 FGD5Q6ZNL6 1462 aa33.45■■■□□ 2.94
FAM3A-202ENST00000359889 TNIKQ9UKE5 1360 aa33.43■■■□□ 2.94
FAM3A-202ENST00000359889 UBTFP17480 764 aaKnown RBP33.42■■■□□ 2.94
FAM3A-202ENST00000359889 KIF21BO75037 1637 aa33.42■■■□□ 2.94
FAM3A-202ENST00000359889 TOPBP1Q92547 1522 aa33.4■■■□□ 2.94
FAM3A-202ENST00000359889 CUX2O14529 1486 aa33.31■■■□□ 2.92
FAM3A-202ENST00000359889 URB2Q14146 1524 aaKnown RBP33.28■■■□□ 2.92
FAM3A-202ENST00000359889 POLA1P09884 1462 aaPredicted RBP33.25■■■□□ 2.91
FAM3A-202ENST00000359889 CEP162Q5TB80 1403 aa33.23■■■□□ 2.91
FAM3A-202ENST00000359889 PRXQ9BXM0 1461 aa33.22■■■□□ 2.91
FAM3A-202ENST00000359889 KIF21AQ7Z4S6 1674 aa33.22■■■□□ 2.91
FAM3A-202ENST00000359889 RAPGEF2Q9Y4G8 1499 aa33.2■■■□□ 2.91
FAM3A-202ENST00000359889 ERICH3Q5RHP9 1530 aa33.2■■■□□ 2.9
FAM3A-202ENST00000359889 ABCA10Q8WWZ4 1543 aa33.17■■■□□ 2.9
FAM3A-202ENST00000359889 RAD54L2Q9Y4B4 1467 aa33.13■■■□□ 2.89
FAM3A-202ENST00000359889 MRC2Q9UBG0 1479 aa33.12■■■□□ 2.89
FAM3A-202ENST00000359889 IGF1RP08069 1367 aa33.11■■■□□ 2.89
FAM3A-202ENST00000359889 CARMIL1Q5VZK9 1371 aa32.99■■■□□ 2.87
FAM3A-202ENST00000359889 ERCC6Q03468 1493 aa32.99■■■□□ 2.87
FAM3A-202ENST00000359889 CLIP1P30622 1438 aa32.97■■■□□ 2.87
FAM3A-202ENST00000359889 WDR97A6NE52 1622 aa32.89■■■□□ 2.86
FAM3A-202ENST00000359889 TRIM26Q12899 539 aaPredicted RBP32.89■■■□□ 2.86
FAM3A-202ENST00000359889 PCGF6Q9BYE7 350 aa32.88■■■□□ 2.85
FAM3A-202ENST00000359889 WDR62O43379 1518 aa32.88■■■□□ 2.85
FAM3A-202ENST00000359889 TDRD9Q8NDG6 1382 aaKnown RBP32.85■■■□□ 2.85
FAM3A-202ENST00000359889 GAPVD1Q14C86 1478 aa32.83■■■□□ 2.85
FAM3A-202ENST00000359889 TARBP1Q13395 1621 aaKnown RBP32.81■■■□□ 2.84
FAM3A-202ENST00000359889 ABCA5Q8WWZ7 1642 aa32.81■■■□□ 2.84
FAM3A-202ENST00000359889 CUL7Q14999 1698 aa32.81■■■□□ 2.84
FAM3A-202ENST00000359889 IFT140Q96RY7 1462 aa32.77■■■□□ 2.84
FAM3A-202ENST00000359889 RANGAP1P46060 587 aaPredicted RBP32.76■■■□□ 2.83
FAM3A-202ENST00000359889 VPS8Q8N3P4 1428 aa32.69■■■□□ 2.82
FAM3A-202ENST00000359889 THOC2Q8NI27 1593 aaKnown RBP32.66■■■□□ 2.82
FAM3A-202ENST00000359889 AQRO60306 1485 aaKnown RBP eCLIP32.58■■■□□ 2.814e-7■■■□□ 18.5
FAM3A-202ENST00000359889 GRIN2BQ13224 1484 aa32.57■■■□□ 2.8
FAM3A-202ENST00000359889 PPARGC1BQ86YN6 1023 aaKnown RBP32.57■■■□□ 2.8
FAM3A-202ENST00000359889 APLP2Q06481 763 aa32.56■■■□□ 2.8
FAM3A-202ENST00000359889 ARAP1Q96P48 1450 aa32.53■■■□□ 2.8
FAM3A-202ENST00000359889 FHAD1B1AJZ9 1412 aa32.51■■■□□ 2.79
FAM3A-202ENST00000359889 ARHGAP35Q9NRY4 1499 aa32.5■■■□□ 2.79
FAM3A-202ENST00000359889 PBRM1Q86U86 1689 aa32.49■■■□□ 2.79
FAM3A-202ENST00000359889 ZNF608Q9ULD9 1512 aaPredicted RBP32.48■■■□□ 2.79
Retrieved 100 of 20,778 RNA–protein pairs in 116.5 ms