Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 Z82202.1-201ENST00000623446 1880 ntBASIC19.71■□□□□ 0.75
PTPN4P29074 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTPN4P29074 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.7■□□□□ 0.74
PTPN4P29074 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
PTPN4P29074 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PTPN4P29074 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTPN4P29074 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTPN4P29074 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTPN4P29074 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTPN4P29074 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTPN4P29074 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC19.7■□□□□ 0.74
PTPN4P29074 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
PTPN4P29074 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC19.7■□□□□ 0.74
PTPN4P29074 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.7■□□□□ 0.74
PTPN4P29074 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.7■□□□□ 0.74
PTPN4P29074 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.7■□□□□ 0.74
PTPN4P29074 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTPN4P29074 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PTPN4P29074 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTPN4P29074 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTPN4P29074 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTPN4P29074 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.7■□□□□ 0.74
PTPN4P29074 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
PTPN4P29074 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.7■□□□□ 0.74
PTPN4P29074 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PTPN4P29074 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTPN4P29074 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PTPN4P29074 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.69■□□□□ 0.74
PTPN4P29074 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.69■□□□□ 0.74
PTPN4P29074 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.69■□□□□ 0.74
PTPN4P29074 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.69■□□□□ 0.74
PTPN4P29074 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC19.69■□□□□ 0.74
PTPN4P29074 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTPN4P29074 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PTPN4P29074 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.69■□□□□ 0.74
PTPN4P29074 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC19.69■□□□□ 0.74
PTPN4P29074 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC19.69■□□□□ 0.74
PTPN4P29074 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC19.69■□□□□ 0.74
PTPN4P29074 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PTPN4P29074 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PTPN4P29074 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTPN4P29074 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTPN4P29074 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTPN4P29074 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTPN4P29074 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PTPN4P29074 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
PTPN4P29074 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
PTPN4P29074 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTPN4P29074 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTPN4P29074 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PTPN4P29074 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
PTPN4P29074 POU5F1P3-201ENST00000428824 1078 ntBASIC19.68■□□□□ 0.74
PTPN4P29074 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTPN4P29074 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC19.68■□□□□ 0.74
PTPN4P29074 RARRES2P4-201ENST00000514074 484 ntBASIC19.68■□□□□ 0.74
PTPN4P29074 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.68■□□□□ 0.74
PTPN4P29074 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC19.68■□□□□ 0.74
PTPN4P29074 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.68■□□□□ 0.74
PTPN4P29074 AC066615.1-201ENST00000640911 628 ntBASIC19.68■□□□□ 0.74
PTPN4P29074 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTPN4P29074 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
PTPN4P29074 AC010980.2-201ENST00000587099 1412 ntBASIC19.68■□□□□ 0.74
PTPN4P29074 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTPN4P29074 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.67■□□□□ 0.74
PTPN4P29074 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTPN4P29074 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTPN4P29074 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTPN4P29074 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PTPN4P29074 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.67■□□□□ 0.74
PTPN4P29074 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC19.67■□□□□ 0.74
PTPN4P29074 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.67■□□□□ 0.74
PTPN4P29074 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTPN4P29074 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.67■□□□□ 0.74
PTPN4P29074 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PTPN4P29074 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
PTPN4P29074 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PTPN4P29074 AC097658.1-201ENST00000475555 843 ntBASIC19.67■□□□□ 0.74
PTPN4P29074 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.67■□□□□ 0.74
PTPN4P29074 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC19.67■□□□□ 0.74
PTPN4P29074 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PTPN4P29074 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PTPN4P29074 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTPN4P29074 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTPN4P29074 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC19.67■□□□□ 0.74
PTPN4P29074 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTPN4P29074 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTPN4P29074 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.67■□□□□ 0.74
PTPN4P29074 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTPN4P29074 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
PTPN4P29074 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.67■□□□□ 0.74
PTPN4P29074 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PTPN4P29074 TREX1-205ENST00000625293 1783 ntBASIC19.67■□□□□ 0.74
PTPN4P29074 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTPN4P29074 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTPN4P29074 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PTPN4P29074 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.67■□□□□ 0.74
PTPN4P29074 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTPN4P29074 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTPN4P29074 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PTPN4P29074 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms