RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 NISCHQ9Y2I1 1504 aa49.85■■■■■ 5.57
CD44-222ENST00000526025 CCDC180Q9P1Z9 1646 aa44.27■■■■■ 4.68
CD44-222ENST00000526025 ABCC9O60706 1549 aa42.65■■■■■ 4.42
CD44-222ENST00000526025 ZCCHC6Q5VYS8 1495 aaKnown RBP41.64■■■■■ 4.26
CD44-222ENST00000526025 NACADO15069 1562 aa41.46■■■■■ 4.23
CD44-222ENST00000526025 MYO15BQ96JP2 1530 aa41.43■■■■■ 4.22
CD44-222ENST00000526025 DCAF1Q9Y4B6 1507 aa41.39■■■■■ 4.22
CD44-222ENST00000526025 RB1CC1Q8TDY2 1594 aa41.37■■■■■ 4.21
CD44-222ENST00000526025 DCAF8L2P0C7V8 631 aa41.2■■■■■ 4.19
CD44-222ENST00000526025 UNC13AQ9UPW8 1703 aa40.47■■■■■ 4.07
CD44-222ENST00000526025 SCRIBQ14160 1630 aa40.24■■■■■ 4.03
CD44-222ENST00000526025 BICRAQ9NZM4 1560 aa40.08■■■■■ 4.01
CD44-222ENST00000526025 SHROOM4Q9ULL8 1493 aa39.85■■■■□ 3.97
CD44-222ENST00000526025 PABPN1Q86U42 306 aaKnown RBP eCLIP39.84■■■■□ 3.97
CD44-222ENST00000526025 EIF4G1Q04637 1599 aaKnown RBP38.98■■■■□ 3.83
CD44-222ENST00000526025 CC2D2AQ9P2K1 1620 aa38.7■■■■□ 3.79
CD44-222ENST00000526025 CECR2Q9BXF3 1484 aa38.69■■■■□ 3.78
CD44-222ENST00000526025 DNAJC5BQ9UF47 199 aa38.69■■■■□ 3.78
CD44-222ENST00000526025 BAZ1AQ9NRL2 1556 aaPredicted RBP38.64■■■■□ 3.78
CD44-222ENST00000526025 SMARCA4P51532 1647 aa38.61■■■■□ 3.77
CD44-222ENST00000526025 MROH2BQ7Z745 1585 aa38.36■■■■□ 3.73
CD44-222ENST00000526025 PEG3Q9GZU2 1588 aa38.31■■■■□ 3.72
CD44-222ENST00000526025 SMARCA2P51531 1590 aa38.29■■■■□ 3.72
CD44-222ENST00000526025 ATAD2BQ9ULI0 1458 aa38.25■■■■□ 3.71
CD44-222ENST00000526025 NCAPD3P42695 1498 aa38.21■■■■□ 3.71
CD44-222ENST00000526025 HMGXB3Q12766 1538 aa38.11■■■■□ 3.69
CD44-222ENST00000526025 RSF1Q96T23 1441 aaPredicted RBP38.08■■■■□ 3.69
CD44-222ENST00000526025 WIZO95785 1651 aa37.99■■■■□ 3.67
CD44-222ENST00000526025 BAZ1BQ9UIG0 1483 aaKnown RBP37.96■■■■□ 3.67
CD44-222ENST00000526025 TOP2AP11388 1531 aaKnown RBP37.67■■■■□ 3.62
CD44-222ENST00000526025 SUPT5HO00267 1087 aaKnown RBP37.25■■■■□ 3.55
CD44-222ENST00000526025 LAMC3Q9Y6N6 1575 aa37.17■■■■□ 3.54
CD44-222ENST00000526025 CCDC88BA6NC98 1476 aa37.15■■■■□ 3.54
CD44-222ENST00000526025 CADPSQ9ULU8 1353 aa37.06■■■■□ 3.52
CD44-222ENST00000526025 NESP48681 1621 aa37.03■■■■□ 3.52
CD44-222ENST00000526025 CFTRP13569 1480 aa36.97■■■■□ 3.51
CD44-222ENST00000526025 PRDM2Q13029 1718 aa36.88■■■■□ 3.49
CD44-222ENST00000526025 PDS5BQ9NTI5 1447 aa36.85■■■■□ 3.49
CD44-222ENST00000526025 ERCC6Q03468 1493 aa36.76■■■■□ 3.48
CD44-222ENST00000526025 KIF21AQ7Z4S6 1674 aa36.72■■■■□ 3.47
CD44-222ENST00000526025 FANCD2Q9BXW9 1451 aa36.63■■■■□ 3.45
CD44-222ENST00000526025 CEP164Q9UPV0 1460 aa36.57■■■■□ 3.45
CD44-222ENST00000526025 THOC2Q8NI27 1593 aaKnown RBP36.52■■■■□ 3.44
CD44-222ENST00000526025 MRC2Q9UBG0 1479 aa36.44■■■■□ 3.42
CD44-222ENST00000526025 WDR62O43379 1518 aa36.35■■■■□ 3.41
CD44-222ENST00000526025 CUX2O14529 1486 aa36.34■■■■□ 3.41
CD44-222ENST00000526025 URB2Q14146 1524 aaKnown RBP36.24■■■■□ 3.39
CD44-222ENST00000526025 ABCC8Q09428 1581 aa36.22■■■■□ 3.39
CD44-222ENST00000526025 DNMBPQ6XZF7 1577 aa36.15■■■■□ 3.38
CD44-222ENST00000526025 TOPBP1Q92547 1522 aa36.12■■■■□ 3.37
CD44-222ENST00000526025 CUX1P39880 1505 aa35.98■■■■□ 3.35
CD44-222ENST00000526025 WRNQ14191 1432 aaPredicted RBP eCLIP35.91■■■■□ 3.34
CD44-222ENST00000526025 BIVM-ERCC5R4GMW8 1640 aa35.88■■■■□ 3.33
CD44-222ENST00000526025 TOP2BQ02880 1626 aa35.86■■■■□ 3.33
CD44-222ENST00000526025 POLA1P09884 1462 aaPredicted RBP35.83■■■■□ 3.33
CD44-222ENST00000526025 SYNJ1O43426 1573 aa35.81■■■■□ 3.32
CD44-222ENST00000526025 IFT140Q96RY7 1462 aa35.8■■■■□ 3.32
CD44-222ENST00000526025 FGD5Q6ZNL6 1462 aa35.79■■■■□ 3.32
CD44-222ENST00000526025 TARBP1Q13395 1621 aaKnown RBP35.73■■■■□ 3.31
CD44-222ENST00000526025 SOGA1O94964 1423 aa35.66■■■■□ 3.3
CD44-222ENST00000526025 WDR97A6NE52 1622 aa35.6■■■■□ 3.29
CD44-222ENST00000526025 RAD54L2Q9Y4B4 1467 aa35.6■■■■□ 3.29
CD44-222ENST00000526025 ABCA10Q8WWZ4 1543 aa35.52■■■■□ 3.28
CD44-222ENST00000526025 ZNF608Q9ULD9 1512 aaPredicted RBP35.52■■■■□ 3.28
CD44-222ENST00000526025 EIF4G3O43432 1585 aaKnown RBP35.49■■■■□ 3.27
CD44-222ENST00000526025 ABCA5Q8WWZ7 1642 aa35.37■■■■□ 3.25
CD44-222ENST00000526025 AQRO60306 1485 aaKnown RBP eCLIP35.35■■■■□ 3.25
CD44-222ENST00000526025 TDRD9Q8NDG6 1382 aaKnown RBP35.34■■■■□ 3.25
CD44-222ENST00000526025 GAPVD1Q14C86 1478 aa35.28■■■■□ 3.24
CD44-222ENST00000526025 PBRM1Q86U86 1689 aa35.26■■■■□ 3.23
CD44-222ENST00000526025 TRIM41Q8WV44 630 aa35.25■■■■□ 3.23
CD44-222ENST00000526025 GRIN2BQ13224 1484 aa35.24■■■■□ 3.23
CD44-222ENST00000526025 MAGI1Q96QZ7 1491 aaPredicted RBP35.15■■■■□ 3.22
CD44-222ENST00000526025 KIF27Q86VH2 1401 aa35.14■■■■□ 3.22
CD44-222ENST00000526025 ERICH3Q5RHP9 1530 aa35.13■■■■□ 3.21
CD44-222ENST00000526025 CHIC1Q5VXU3 224 aa35.1■■■■□ 3.21
CD44-222ENST00000526025 SNAPC4Q5SXM2 1469 aa35.09■■■■□ 3.21
CD44-222ENST00000526025 ADAMTS12P58397 1594 aa34.99■■■■□ 3.19
CD44-222ENST00000526025 CHD1O14646 1710 aa34.98■■■■□ 3.19
CD44-222ENST00000526025 SYNJ2O15056 1496 aa34.97■■■■□ 3.19
CD44-222ENST00000526025 CUL7Q14999 1698 aa34.92■■■■□ 3.18
CD44-222ENST00000526025 FHAD1B1AJZ9 1412 aa34.9■■■■□ 3.18
CD44-222ENST00000526025 IGF1RP08069 1367 aa34.9■■■■□ 3.18
CD44-222ENST00000526025 RUSC2Q8N2Y8 1516 aa34.85■■■■□ 3.17
CD44-222ENST00000526025 EEA1Q15075 1411 aa34.82■■■■□ 3.17
CD44-222ENST00000526025 CHMP7Q8WUX9 453 aaPredicted RBP34.81■■■■□ 3.16
CD44-222ENST00000526025 GRIN2AQ12879 1464 aa34.78■■■■□ 3.16
CD44-222ENST00000526025 OSCARQ8IYS5 282 aa34.78■■■■□ 3.16
CD44-222ENST00000526025 FBLN2P98095 1184 aa34.75■■■■□ 3.15
CD44-222ENST00000526025 CARMIL1Q5VZK9 1371 aa34.71■■■■□ 3.15
CD44-222ENST00000526025 NUP160Q12769 1436 aa34.64■■■■□ 3.14
CD44-222ENST00000526025 CLASP1Q7Z460 1538 aa34.61■■■■□ 3.13
CD44-222ENST00000526025 DNAJC5Q9H3Z4 198 aa34.6■■■■□ 3.13
CD44-222ENST00000526025 CEP170Q5SW79 1584 aa34.59■■■■□ 3.13
CD44-222ENST00000526025 PRXQ9BXM0 1461 aa34.58■■■■□ 3.13
CD44-222ENST00000526025 RAPGEF2Q9Y4G8 1499 aa34.58■■■■□ 3.13
CD44-222ENST00000526025 CSRNP3Q8WYN3 585 aa34.57■■■■□ 3.12
CD44-222ENST00000526025 KIF21BO75037 1637 aa34.43■■■■□ 3.1
CD44-222ENST00000526025 KIAA0586Q9BVV6 1533 aa34.4■■■■□ 3.1
CD44-222ENST00000526025 SHROOM2Q13796 1616 aa34.38■■■■□ 3.09
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms