RNA–Protein interactions for RNA: ENST00000557258.5

FOXN3-214, Transcript of forkhead box N3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene FOXN3, Length 2,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3-214ENST00000557258 NISCHQ9Y2I1 1504 aa40.88■■■■■ 4.13
FOXN3-214ENST00000557258 SHROOM4Q9ULL8 1493 aa35.02■■■■□ 3.2
FOXN3-214ENST00000557258 CCDC180Q9P1Z9 1646 aa34.75■■■■□ 3.15
FOXN3-214ENST00000557258 DCAF8L2P0C7V8 631 aa34.51■■■■□ 3.12
FOXN3-214ENST00000557258 ZCCHC6Q5VYS8 1495 aaKnown RBP34.47■■■■□ 3.11
FOXN3-214ENST00000557258 SUPT5HO00267 1087 aaKnown RBP34.12■■■■□ 3.05
FOXN3-214ENST00000557258 DCAF1Q9Y4B6 1507 aa33.32■■■□□ 2.92
FOXN3-214ENST00000557258 ABCC9O60706 1549 aa32.97■■■□□ 2.87
FOXN3-214ENST00000557258 SCRIBQ14160 1630 aa32.86■■■□□ 2.85
FOXN3-214ENST00000557258 CHIC1Q5VXU3 224 aa32.76■■■□□ 2.84
FOXN3-214ENST00000557258 MYO15BQ96JP2 1530 aa32.59■■■□□ 2.81
FOXN3-214ENST00000557258 NACADO15069 1562 aa32.29■■■□□ 2.76
FOXN3-214ENST00000557258 RSF1Q96T23 1441 aaPredicted RBP32.28■■■□□ 2.76
FOXN3-214ENST00000557258 CECR2Q9BXF3 1484 aa32.1■■■□□ 2.73
FOXN3-214ENST00000557258 LOC105371045A0A1W2PR82 267 aa31.98■■■□□ 2.71
FOXN3-214ENST00000557258 RB1CC1Q8TDY2 1594 aa31.94■■■□□ 2.7
FOXN3-214ENST00000557258 MROH2BQ7Z745 1585 aa31.87■■■□□ 2.69
FOXN3-214ENST00000557258 WIZO95785 1651 aa31.69■■■□□ 2.66
FOXN3-214ENST00000557258 TRIM41Q8WV44 630 aa31.66■■■□□ 2.66
FOXN3-214ENST00000557258 FAM9AQ8IZU1 332 aaPredicted RBP31.62■■■□□ 2.65
FOXN3-214ENST00000557258 PABPN1Q86U42 306 aaKnown RBP eCLIP31.58■■■□□ 2.65
FOXN3-214ENST00000557258 EHMT2Q96KQ7 1210 aa31.56■■■□□ 2.64
FOXN3-214ENST00000557258 PCGF6Q9BYE7 350 aa31.51■■■□□ 2.63
FOXN3-214ENST00000557258 UNC13AQ9UPW8 1703 aa31.47■■■□□ 2.63
FOXN3-214ENST00000557258 BAZ1AQ9NRL2 1556 aaPredicted RBP31.39■■■□□ 2.62
FOXN3-214ENST00000557258 SMARCA4P51532 1647 aa31.22■■■□□ 2.59
FOXN3-214ENST00000557258 BICRAQ9NZM4 1560 aa31.12■■■□□ 2.57
FOXN3-214ENST00000557258 TOP2AP11388 1531 aaKnown RBP31.04■■■□□ 2.56
FOXN3-214ENST00000557258 CCDC88BA6NC98 1476 aa31.03■■■□□ 2.56
FOXN3-214ENST00000557258 HRCP23327 699 aa31.01■■■□□ 2.55
FOXN3-214ENST00000557258 ABCC8Q09428 1581 aa30.93■■■□□ 2.54
FOXN3-214ENST00000557258 SMARCA2P51531 1590 aa30.91■■■□□ 2.54
FOXN3-214ENST00000557258 EIF4G1Q04637 1599 aaKnown RBP30.91■■■□□ 2.54
FOXN3-214ENST00000557258 TRIM26Q12899 539 aaPredicted RBP30.77■■■□□ 2.52
FOXN3-214ENST00000557258 PPARGC1BQ86YN6 1023 aaKnown RBP30.74■■■□□ 2.51
FOXN3-214ENST00000557258 SOGA1O94964 1423 aa30.56■■■□□ 2.48
FOXN3-214ENST00000557258 ATAD2BQ9ULI0 1458 aa30.56■■■□□ 2.48
FOXN3-214ENST00000557258 BAZ1BQ9UIG0 1483 aaKnown RBP30.49■■■□□ 2.47
FOXN3-214ENST00000557258 PEG3Q9GZU2 1588 aa30.49■■■□□ 2.47
FOXN3-214ENST00000557258 RUSC2Q8N2Y8 1516 aa30.46■■■□□ 2.47
FOXN3-214ENST00000557258 TTBK1Q5TCY1 1321 aaPredicted RBP30.39■■■□□ 2.46
FOXN3-214ENST00000557258 WRNQ14191 1432 aaPredicted RBP eCLIP30.34■■■□□ 2.45
FOXN3-214ENST00000557258 UBTFP17480 764 aaKnown RBP30.28■■■□□ 2.44
FOXN3-214ENST00000557258 CSRNP3Q8WYN3 585 aa30.28■■■□□ 2.44
FOXN3-214ENST00000557258 SYNJ1O43426 1573 aa30.22■■■□□ 2.43
FOXN3-214ENST00000557258 CEP162Q5TB80 1403 aa30.15■■■□□ 2.42
FOXN3-214ENST00000557258 RANGAP1P46060 587 aaPredicted RBP30.06■■■□□ 2.4
FOXN3-214ENST00000557258 EEA1Q15075 1411 aa30.01■■■□□ 2.4
FOXN3-214ENST00000557258 TNIKQ9UKE5 1360 aa30.01■■■□□ 2.4
FOXN3-214ENST00000557258 NCAPD3P42695 1498 aa29.94■■■□□ 2.38
FOXN3-214ENST00000557258 GOLGA3Q08378 1498 aa29.94■■■□□ 2.38
FOXN3-214ENST00000557258 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.88■■■□□ 2.37
FOXN3-214ENST00000557258 HMGXB3Q12766 1538 aa29.85■■■□□ 2.37
FOXN3-214ENST00000557258 CEP164Q9UPV0 1460 aa29.8■■■□□ 2.36
FOXN3-214ENST00000557258 RAPGEF2Q9Y4G8 1499 aa29.79■■■□□ 2.36
FOXN3-214ENST00000557258 TOP2BQ02880 1626 aa29.76■■■□□ 2.35
FOXN3-214ENST00000557258 ZEB1P37275 1124 aaPredicted RBP29.75■■■□□ 2.35
FOXN3-214ENST00000557258 CCER1Q8TC90 406 aaPredicted RBP29.68■■■□□ 2.34
FOXN3-214ENST00000557258 CLIP1P30622 1438 aa29.67■■■□□ 2.34
FOXN3-214ENST00000557258 CUX1P39880 1505 aa29.67■■■□□ 2.34
FOXN3-214ENST00000557258 KIF21BO75037 1637 aa29.67■■■□□ 2.34
FOXN3-214ENST00000557258 CFTRP13569 1480 aa29.64■■■□□ 2.34
FOXN3-214ENST00000557258 BIVM-ERCC5R4GMW8 1640 aa29.6■■■□□ 2.33
FOXN3-214ENST00000557258 CC2D2AQ9P2K1 1620 aa29.53■■■□□ 2.32
FOXN3-214ENST00000557258 CADPSQ9ULU8 1353 aa29.44■■■□□ 2.3
FOXN3-214ENST00000557258 HNRNPUL2Q1KMD3 747 aaKnown RBP29.44■■■□□ 2.3
FOXN3-214ENST00000557258 VPS8Q8N3P4 1428 aa29.42■■■□□ 2.3
FOXN3-214ENST00000557258 APLP2Q06481 763 aa29.41■■■□□ 2.3
FOXN3-214ENST00000557258 KIF27Q86VH2 1401 aa29.41■■■□□ 2.3
FOXN3-214ENST00000557258 PRXQ9BXM0 1461 aa29.39■■■□□ 2.3
FOXN3-214ENST00000557258 CUX2O14529 1486 aa29.31■■■□□ 2.28
FOXN3-214ENST00000557258 NESP48681 1621 aa29.26■■■□□ 2.27
FOXN3-214ENST00000557258 DNAJC5BQ9UF47 199 aa29.25■■■□□ 2.27
FOXN3-214ENST00000557258 ERICH3Q5RHP9 1530 aa29.25■■■□□ 2.27
FOXN3-214ENST00000557258 FGD5Q6ZNL6 1462 aa29.23■■■□□ 2.27
FOXN3-214ENST00000557258 ARAP1Q96P48 1450 aa29.21■■■□□ 2.27
FOXN3-214ENST00000557258 FANCD2Q9BXW9 1451 aa29.19■■■□□ 2.26
FOXN3-214ENST00000557258 PRDM2Q13029 1718 aa29.19■■■□□ 2.26
FOXN3-214ENST00000557258 KANK4Q5T7N3 995 aaPredicted RBP29.17■■■□□ 2.26
FOXN3-214ENST00000557258 IGF1RP08069 1367 aa29.17■■■□□ 2.26
FOXN3-214ENST00000557258 RAD54L2Q9Y4B4 1467 aa29.09■■■□□ 2.25
FOXN3-214ENST00000557258 CARMIL1Q5VZK9 1371 aa29.06■■■□□ 2.24
FOXN3-214ENST00000557258 ARHGAP35Q9NRY4 1499 aa29.04■■■□□ 2.24
FOXN3-214ENST00000557258 P3H3Q8IVL6 736 aa29.03■■■□□ 2.24
FOXN3-214ENST00000557258 TOPBP1Q92547 1522 aa28.93■■■□□ 2.22
FOXN3-214ENST00000557258 POLA1P09884 1462 aaPredicted RBP28.93■■■□□ 2.22
FOXN3-214ENST00000557258 ITGAEP38570 1179 aa28.91■■■□□ 2.22
FOXN3-214ENST00000557258 ATP1B4Q9UN42 357 aaPredicted RBP28.9■■■□□ 2.22
FOXN3-214ENST00000557258 DNMBPQ6XZF7 1577 aa28.87■■■□□ 2.21
FOXN3-214ENST00000557258 URB2Q14146 1524 aaKnown RBP28.8■■■□□ 2.2
FOXN3-214ENST00000557258 TDRD9Q8NDG6 1382 aaKnown RBP28.8■■■□□ 2.2
FOXN3-214ENST00000557258 DIEXFQ68CQ4 756 aaKnown RBP28.8■■■□□ 2.2
FOXN3-214ENST00000557258 ABCA10Q8WWZ4 1543 aa28.76■■■□□ 2.19
FOXN3-214ENST00000557258 FHOD3Q2V2M9 1422 aa28.7■■■□□ 2.19
FOXN3-214ENST00000557258 LAMC3Q9Y6N6 1575 aa28.69■■■□□ 2.18
FOXN3-214ENST00000557258 CCNB3Q8WWL7 1395 aa28.64■■■□□ 2.18
FOXN3-214ENST00000557258 PDS5BQ9NTI5 1447 aa28.62■■■□□ 2.17
FOXN3-214ENST00000557258 ZNF316A6NFI3 1004 aaPredicted RBP28.62■■■□□ 2.17
FOXN3-214ENST00000557258 RRBP1Q9P2E9 1410 aaKnown RBP28.62■■■□□ 2.17
FOXN3-214ENST00000557258 KIF21AQ7Z4S6 1674 aa28.59■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms