Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 SPPL2B-204ENST00000587851 586 ntTSL 319.37■□□□□ 0.693e-6■■□□□ 13
SMNDC1O75940 NUBP2-209ENST00000566090 708 ntTSL 219.05■□□□□ 0.643e-6■■□□□ 13
SMNDC1O75940 RUVBL2-204ENST00000594338 1853 ntTSL 518.75■□□□□ 0.593e-6■■□□□ 13
SMNDC1O75940 NUBP2-204ENST00000563821 2235 nt18.57■□□□□ 0.563e-6■■□□□ 13
SMNDC1O75940 TBCD-207ENST00000571796 1940 ntTSL 1 (best)18.48■□□□□ 0.553e-6■■□□□ 13
SMNDC1O75940 RUVBL2-208ENST00000596247 1563 ntTSL 218.15■□□□□ 0.53e-6■■□□□ 13
SMNDC1O75940 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC18.04■□□□□ 0.483e-6■■□□□ 13
SMNDC1O75940 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC17.78■□□□□ 0.443e-6■■□□□ 13
SMNDC1O75940 NUBP2-210ENST00000566447 511 ntTSL 417.28■□□□□ 0.363e-6■■□□□ 13
SMNDC1O75940 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC16.47■□□□□ 0.233e-6■■□□□ 13
SMNDC1O75940 ACADVL-232ENST00000583074 410 ntTSL 516.46■□□□□ 0.233e-6■■□□□ 13
SMNDC1O75940 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.23e-6■■□□□ 13
SMNDC1O75940 RUVBL2-201ENST00000221413 1478 ntTSL 1 (best)15.7■□□□□ 0.13e-6■■□□□ 13
SMNDC1O75940 GET4-206ENST00000464468 676 ntTSL 315.65■□□□□ 0.13e-6■■□□□ 13
SMNDC1O75940 GATD1-213ENST00000532320 1273 ntTSL 1 (best)15.05■□□□□ -03e-6■■□□□ 13
SMNDC1O75940 SPPL2B-201ENST00000585725 583 ntTSL 314.92□□□□□ -0.023e-6■■□□□ 13
SMNDC1O75940 C11orf98-203ENST00000532786 774 ntTSL 214.77□□□□□ -0.053e-6■■□□□ 13
SMNDC1O75940 GATD1-216ENST00000534603 863 ntTSL 1 (best)14.73□□□□□ -0.053e-6■■□□□ 13
SMNDC1O75940 GATD1-206ENST00000526325 756 ntTSL 5 BASIC14.61□□□□□ -0.073e-6■■□□□ 13
SMNDC1O75940 GATD1-207ENST00000526650 457 ntTSL 314.61□□□□□ -0.073e-6■■□□□ 13
SMNDC1O75940 DGCR8-207ENST00000491892 630 ntTSL 214.26□□□□□ -0.131e-7■■□□□ 13
SMNDC1O75940 SPPL2B-206ENST00000593243 551 ntTSL 414□□□□□ -0.173e-6■■□□□ 13
SMNDC1O75940 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC13.99□□□□□ -0.173e-6■■□□□ 13
SMNDC1O75940 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.263e-6■■□□□ 13
SMNDC1O75940 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.273e-6■■□□□ 13
SMNDC1O75940 GATD1-208ENST00000528309 510 ntTSL 313.25□□□□□ -0.293e-6■■□□□ 13
SMNDC1O75940 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC13.22□□□□□ -0.293e-6■■□□□ 13
SMNDC1O75940 TBCD-225ENST00000576996 827 ntTSL 513.1□□□□□ -0.313e-6■■□□□ 13
SMNDC1O75940 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC12.87□□□□□ -0.353e-6■■□□□ 13
SMNDC1O75940 LBHD1-204ENST00000431002 2915 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.393e-6■■□□□ 13
SMNDC1O75940 GATD1-212ENST00000530209 600 ntTSL 412.41□□□□□ -0.423e-6■■□□□ 13
SMNDC1O75940 GATD1-211ENST00000529966 800 ntTSL 1 (best)12.4□□□□□ -0.423e-6■■□□□ 13
SMNDC1O75940 GATD1-214ENST00000532839 559 ntTSL 1 (best)12.36□□□□□ -0.433e-6■■□□□ 13
SMNDC1O75940 TBCD-201ENST00000355528 7168 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.493e-6■■□□□ 13
SMNDC1O75940 LBHD1-203ENST00000415855 821 ntAPPRIS ALT2 TSL 311.96□□□□□ -0.493e-6■■□□□ 13
SMNDC1O75940 GATD1-201ENST00000319863 4357 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.553e-6■■□□□ 13
SMNDC1O75940 SNRNP200-201ENST00000323853 7165 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.622e-6■■□□□ 13
SMNDC1O75940 GATD1-202ENST00000354286 3973 ntTSL 510.89□□□□□ -0.673e-6■■□□□ 13
SMNDC1O75940 TBCD-224ENST00000576760 1059 ntTSL 510.81□□□□□ -0.683e-6■■□□□ 13
SMNDC1O75940 TBCD-210ENST00000572953 702 ntTSL 510.29□□□□□ -0.763e-6■■□□□ 13
SMNDC1O75940 TBCD-213ENST00000574422 879 ntTSL 210.02□□□□□ -0.813e-6■■□□□ 13
SMNDC1O75940 TBCD-206ENST00000571712 850 ntTSL 59.9□□□□□ -0.823e-6■■□□□ 13
SMNDC1O75940 RUVBL2-212ENST00000627972 1065 ntTSL 5 BASIC9.89□□□□□ -0.833e-6■■□□□ 13
SMNDC1O75940 TBCD-205ENST00000571618 775 ntTSL 39.7□□□□□ -0.863e-6■■□□□ 13
SMNDC1O75940 TBCD-215ENST00000574818 771 ntTSL 39.49□□□□□ -0.893e-6■■□□□ 13
SMNDC1O75940 TBCD-217ENST00000574975 867 ntTSL 59.41□□□□□ -0.93e-6■■□□□ 13
SMNDC1O75940 TBCD-219ENST00000576160 942 ntTSL 58.99□□□□□ -0.973e-6■■□□□ 13
SMNDC1O75940 SLC6A8-210ENST00000485324 2401 ntTSL 220.77■□□□□ 0.923e-9■■□□□ 13
SMNDC1O75940 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.68■□□□□ 0.269e-10■■□□□ 13
SMNDC1O75940 HNRNPA1-205ENST00000547566 1234 ntTSL 1 (best)14.55□□□□□ -0.089e-10■■□□□ 13
SMNDC1O75940 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC12.37□□□□□ -0.439e-10■■□□□ 13
SMNDC1O75940 HNRNPA1-203ENST00000546500 4121 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.779e-10■■□□□ 13
SMNDC1O75940 HNRNPA1-206ENST00000547708 530 ntTSL 49.73□□□□□ -0.859e-10■■□□□ 13
SMNDC1O75940 AC078778.2-201ENST00000553061 567 ntTSL 5 BASIC7.71□□□□□ -1.189e-10■■□□□ 13
SMNDC1O75940 HNRNPA1-204ENST00000547276 1539 ntTSL 1 (best) BASIC7.31□□□□□ -1.249e-10■■□□□ 13
SMNDC1O75940 HNRNPA1-208ENST00000548688 711 ntTSL 36.58□□□□□ -1.369e-10■■□□□ 13
SMNDC1O75940 BRD2-204ENST00000449025 3210 ntAPPRIS ALT2 TSL 1 (best)12.28□□□□□ -0.442e-6■■□□□ 13
SMNDC1O75940 BRD2-205ENST00000449085 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.442e-6■■□□□ 13
SMNDC1O75940 SCARB1-209ENST00000545305 851 ntTSL 212.39□□□□□ -0.436e-24■■□□□ 13
SMNDC1O75940 U2SURP-207ENST00000472373 1182 ntTSL 28.14□□□□□ -1.112e-12■■□□□ 13
SMNDC1O75940 U2SURP-209ENST00000480029 2855 ntTSL 24.04□□□□□ -1.762e-12■■□□□ 13
SMNDC1O75940 HNRNPH1-211ENST00000504779 792 ntTSL 512□□□□□ -0.491e-10■■□□□ 13
SMNDC1O75940 ASPSCR1-204ENST00000577733 5503 ntTSL 217.27■□□□□ 0.353e-7■■□□□ 13
SMNDC1O75940 ALB-220ENST00000621628 1606 ntTSL 5 BASIC8.4□□□□□ -1.071e-11■■□□□ 13
SMNDC1O75940 ALB-203ENST00000415165 1483 ntTSL 1 (best) BASIC7.52□□□□□ -1.211e-11■■□□□ 13
SMNDC1O75940 ALB-205ENST00000476441 1604 ntTSL 57.17□□□□□ -1.261e-11■■□□□ 13
SMNDC1O75940 ALB-211ENST00000505649 1509 ntTSL 56.5□□□□□ -1.371e-11■■□□□ 13
SMNDC1O75940 ALB-219ENST00000621085 1418 ntTSL 5 BASIC6.29□□□□□ -1.41e-11■■□□□ 13
SMNDC1O75940 ALB-208ENST00000495173 445 ntTSL 36.07□□□□□ -1.441e-11■■□□□ 13
SMNDC1O75940 ALB-202ENST00000401494 1659 ntTSL 5 BASIC6.04□□□□□ -1.441e-11■■□□□ 13
SMNDC1O75940 ALB-214ENST00000509063 1911 ntTSL 5 BASIC5.93□□□□□ -1.461e-11■■□□□ 13
SMNDC1O75940 ALB-216ENST00000511370 1519 ntTSL 55.89□□□□□ -1.471e-11■■□□□ 13
SMNDC1O75940 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.541e-11■■□□□ 13
SMNDC1O75940 ALB-213ENST00000508932 369 ntTSL 35.39□□□□□ -1.551e-11■■□□□ 13
SMNDC1O75940 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.34□□□□□ -1.551e-11■■□□□ 13
SMNDC1O75940 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.252e-7■■□□□ 13
SMNDC1O75940 ITGA5-211ENST00000552564 4996 ntTSL 214.28□□□□□ -0.126e-12■■□□□ 13
SMNDC1O75940 ITGA5-208ENST00000551861 536 ntTSL 410.04□□□□□ -0.86e-12■■□□□ 13
SMNDC1O75940 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.752e-12■■□□□ 12.9
SMNDC1O75940 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.612e-12■■□□□ 12.9
SMNDC1O75940 HDAC6-231ENST00000488905 492 ntTSL 416.65■□□□□ 0.261e-6■■□□□ 12.9
SMNDC1O75940 HDAC6-220ENST00000477528 4832 ntTSL 1 (best)14.61□□□□□ -0.071e-6■■□□□ 12.9
SMNDC1O75940 HDAC6-201ENST00000334136 4190 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.51e-6■■□□□ 12.9
SMNDC1O75940 HDAC6-227ENST00000485102 667 ntTSL 311.74□□□□□ -0.531e-6■■□□□ 12.9
SMNDC1O75940 HDAC6-203ENST00000376619 4179 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.61e-6■■□□□ 12.9
SMNDC1O75940 HDAC6-228ENST00000486227 4718 ntTSL 211.22□□□□□ -0.611e-6■■□□□ 12.9
SMNDC1O75940 HDAC6-222ENST00000478095 620 ntTSL 49.18□□□□□ -0.941e-6■■□□□ 12.9
SMNDC1O75940 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC26.52■■□□□ 1.841e-6■■□□□ 12.9
SMNDC1O75940 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.771e-6■■□□□ 12.9
SMNDC1O75940 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC24.74■■□□□ 1.551e-6■■□□□ 12.9
SMNDC1O75940 FTCD-212ENST00000498355 1936 ntTSL 224.66■■□□□ 1.541e-6■■□□□ 12.9
SMNDC1O75940 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.461e-6■■□□□ 12.9
SMNDC1O75940 GUK1-234ENST00000492871 1065 ntTSL 323.16■■□□□ 1.32e-7■■□□□ 12.9
SMNDC1O75940 GUK1-215ENST00000462807 628 ntTSL 223.11■■□□□ 1.292e-7■■□□□ 12.9
SMNDC1O75940 GUK1-235ENST00000493138 694 ntTSL 322.55■■□□□ 1.22e-7■■□□□ 12.9
SMNDC1O75940 GUK1-208ENST00000366728 842 ntTSL 2 BASIC21.76■■□□□ 1.072e-7■■□□□ 12.9
SMNDC1O75940 GUK1-205ENST00000366722 850 ntTSL 3 BASIC19.96■□□□□ 0.792e-7■■□□□ 12.9
SMNDC1O75940 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC19.28■□□□□ 0.682e-7■■□□□ 12.9
SMNDC1O75940 GUK1-213ENST00000453943 656 ntTSL 1 (best)18.98■□□□□ 0.632e-7■■□□□ 12.9
SMNDC1O75940 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC18.34■□□□□ 0.532e-7■■□□□ 12.9
Retrieved 100 of 11,362 protein–RNA pairs in 198.7 ms