RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-231ENST00000488905 NISCHQ9Y2I1 1504 aa46.38■■■■■ 5.02
HDAC6-231ENST00000488905 CCDC180Q9P1Z9 1646 aa41.74■■■■■ 4.27
HDAC6-231ENST00000488905 ABCC9O60706 1549 aa41.56■■■■■ 4.24
HDAC6-231ENST00000488905 RB1CC1Q8TDY2 1594 aa39.64■■■■□ 3.94
HDAC6-231ENST00000488905 NACADO15069 1562 aa39.37■■■■□ 3.89
HDAC6-231ENST00000488905 DCAF8L2P0C7V8 631 aa38.95■■■■□ 3.83
HDAC6-231ENST00000488905 UNC13AQ9UPW8 1703 aa38.87■■■■□ 3.81
HDAC6-231ENST00000488905 DNAJC5BQ9UF47 199 aa38.85■■■■□ 3.81
HDAC6-231ENST00000488905 MYO15BQ96JP2 1530 aa38.84■■■■□ 3.81
HDAC6-231ENST00000488905 PABPN1Q86U42 306 aaKnown RBP eCLIP38.6■■■■□ 3.77
HDAC6-231ENST00000488905 BICRAQ9NZM4 1560 aa38.49■■■■□ 3.75
HDAC6-231ENST00000488905 ZCCHC6Q5VYS8 1495 aaKnown RBP38.49■■■■□ 3.75
HDAC6-231ENST00000488905 DCAF1Q9Y4B6 1507 aa38.36■■■■□ 3.73
HDAC6-231ENST00000488905 SHROOM4Q9ULL8 1493 aa38.01■■■■□ 3.67
HDAC6-231ENST00000488905 SCRIBQ14160 1630 aa37.98■■■■□ 3.67
HDAC6-231ENST00000488905 CC2D2AQ9P2K1 1620 aa37.61■■■■□ 3.61
HDAC6-231ENST00000488905 EIF4G1Q04637 1599 aaKnown RBP37.55■■■■□ 3.6
HDAC6-231ENST00000488905 CECR2Q9BXF3 1484 aa37.45■■■■□ 3.59
HDAC6-231ENST00000488905 NCAPD3P42695 1498 aa36.28■■■■□ 3.4
HDAC6-231ENST00000488905 SMARCA4P51532 1647 aa36.24■■■■□ 3.39
HDAC6-231ENST00000488905 ATAD2BQ9ULI0 1458 aa36.19■■■■□ 3.38
HDAC6-231ENST00000488905 SMARCA2P51531 1590 aa36.14■■■■□ 3.38
HDAC6-231ENST00000488905 HMGXB3Q12766 1538 aa36.11■■■■□ 3.37
HDAC6-231ENST00000488905 BAZ1AQ9NRL2 1556 aaPredicted RBP36.04■■■■□ 3.36
HDAC6-231ENST00000488905 ERCC6Q03468 1493 aa35.9■■■■□ 3.34
HDAC6-231ENST00000488905 PEG3Q9GZU2 1588 aa35.89■■■■□ 3.34
HDAC6-231ENST00000488905 BAZ1BQ9UIG0 1483 aaKnown RBP35.86■■■■□ 3.33
HDAC6-231ENST00000488905 CUX2O14529 1486 aa35.86■■■■□ 3.33
HDAC6-231ENST00000488905 MROH2BQ7Z745 1585 aa35.73■■■■□ 3.31
HDAC6-231ENST00000488905 NESP48681 1621 aa35.72■■■■□ 3.31
HDAC6-231ENST00000488905 DNAJC5Q9H3Z4 198 aa35.67■■■■□ 3.3
HDAC6-231ENST00000488905 LAMC3Q9Y6N6 1575 aa35.55■■■■□ 3.28
HDAC6-231ENST00000488905 THOC2Q8NI27 1593 aaKnown RBP35.47■■■■□ 3.27
HDAC6-231ENST00000488905 KIF21AQ7Z4S6 1674 aa35.39■■■■□ 3.26
HDAC6-231ENST00000488905 WIZO95785 1651 aa35.35■■■■□ 3.25
HDAC6-231ENST00000488905 PDS5BQ9NTI5 1447 aa35.25■■■■□ 3.23
HDAC6-231ENST00000488905 CADPSQ9ULU8 1353 aa35.15■■■■□ 3.22
HDAC6-231ENST00000488905 MRC2Q9UBG0 1479 aa34.99■■■■□ 3.19
HDAC6-231ENST00000488905 RSF1Q96T23 1441 aaPredicted RBP34.97■■■■□ 3.19
HDAC6-231ENST00000488905 WDR62O43379 1518 aa34.95■■■■□ 3.19
HDAC6-231ENST00000488905 TOP2AP11388 1531 aaKnown RBP34.91■■■■□ 3.18
HDAC6-231ENST00000488905 CEP164Q9UPV0 1460 aa34.86■■■■□ 3.17
HDAC6-231ENST00000488905 FANCD2Q9BXW9 1451 aa34.81■■■■□ 3.16
HDAC6-231ENST00000488905 CFTRP13569 1480 aa34.8■■■■□ 3.16
HDAC6-231ENST00000488905 PRDM2Q13029 1718 aa34.67■■■■□ 3.14
HDAC6-231ENST00000488905 URB2Q14146 1524 aaKnown RBP34.53■■■■□ 3.12
HDAC6-231ENST00000488905 CCDC88BA6NC98 1476 aa34.44■■■■□ 3.1
HDAC6-231ENST00000488905 TOPBP1Q92547 1522 aa34.16■■■■□ 3.06
HDAC6-231ENST00000488905 IFT140Q96RY7 1462 aa34.14■■■■□ 3.06
HDAC6-231ENST00000488905 TRIM41Q8WV44 630 aa34.12■■■■□ 3.05
HDAC6-231ENST00000488905 DNMBPQ6XZF7 1577 aa34.08■■■■□ 3.05
HDAC6-231ENST00000488905 OSCARQ8IYS5 282 aa34.08■■■■□ 3.05
HDAC6-231ENST00000488905 ZNF608Q9ULD9 1512 aaPredicted RBP34.08■■■■□ 3.05
HDAC6-231ENST00000488905 ABCC8Q09428 1581 aa34.07■■■■□ 3.05
HDAC6-231ENST00000488905 EIF4G3O43432 1585 aaKnown RBP33.99■■■■□ 3.03
HDAC6-231ENST00000488905 TARBP1Q13395 1621 aaKnown RBP33.9■■■■□ 3.02
HDAC6-231ENST00000488905 POLA1P09884 1462 aaPredicted RBP33.82■■■■□ 3
HDAC6-231ENST00000488905 RIMBP3CA6NJZ7 1639 aa33.81■■■■□ 3
HDAC6-231ENST00000488905 RIMBP3BA6NNM3 1639 aa33.81■■■■□ 3
HDAC6-231ENST00000488905 RIMBP3Q9UFD9 1639 aa33.81■■■■□ 3
HDAC6-231ENST00000488905 CHD1O14646 1710 aa33.76■■■■□ 3
HDAC6-231ENST00000488905 AQRO60306 1485 aaKnown RBP eCLIP33.74■■■□□ 2.994e-11■■□□□ 12.4
HDAC6-231ENST00000488905 ARHGEF11O15085 1522 aa33.68■■■□□ 2.98
HDAC6-231ENST00000488905 RAD54L2Q9Y4B4 1467 aa33.65■■■□□ 2.98
HDAC6-231ENST00000488905 FGD5Q6ZNL6 1462 aa33.61■■■□□ 2.97
HDAC6-231ENST00000488905 WDR97A6NE52 1622 aa33.61■■■□□ 2.97
HDAC6-231ENST00000488905 CUX1P39880 1505 aa33.59■■■□□ 2.97
HDAC6-231ENST00000488905 SOGA1O94964 1423 aa33.59■■■□□ 2.97
HDAC6-231ENST00000488905 TDRD9Q8NDG6 1382 aaKnown RBP33.5■■■□□ 2.95
HDAC6-231ENST00000488905 SNAPC4Q5SXM2 1469 aa33.46■■■□□ 2.95
HDAC6-231ENST00000488905 FBLN2P98095 1184 aa33.44■■■□□ 2.94
HDAC6-231ENST00000488905 MAGI1Q96QZ7 1491 aaPredicted RBP33.38■■■□□ 2.93
HDAC6-231ENST00000488905 PBRM1Q86U86 1689 aa33.36■■■□□ 2.93
HDAC6-231ENST00000488905 GRIN2BQ13224 1484 aa33.35■■■□□ 2.93
HDAC6-231ENST00000488905 ARAP1Q96P48 1450 aa33.34■■■□□ 2.93
HDAC6-231ENST00000488905 SUPT5HO00267 1087 aaKnown RBP33.33■■■□□ 2.93
HDAC6-231ENST00000488905 CLASP1Q7Z460 1538 aa33.33■■■□□ 2.93
HDAC6-231ENST00000488905 SYNJ1O43426 1573 aa33.3■■■□□ 2.92
HDAC6-231ENST00000488905 CYB5RLQ6IPT4 315 aa33.27■■■□□ 2.92
HDAC6-231ENST00000488905 SYNJ2O15056 1496 aa33.25■■■□□ 2.91
HDAC6-231ENST00000488905 ABCA5Q8WWZ7 1642 aa33.25■■■□□ 2.91
HDAC6-231ENST00000488905 ABCA10Q8WWZ4 1543 aa33.23■■■□□ 2.91
HDAC6-231ENST00000488905 GAPVD1Q14C86 1478 aa33.23■■■□□ 2.91
HDAC6-231ENST00000488905 CHMP7Q8WUX9 453 aaPredicted RBP33.21■■■□□ 2.91
HDAC6-231ENST00000488905 BIVM-ERCC5R4GMW8 1640 aa33.13■■■□□ 2.89
HDAC6-231ENST00000488905 TOP2BQ02880 1626 aa33.1■■■□□ 2.89
HDAC6-231ENST00000488905 WRNQ14191 1432 aaPredicted RBP eCLIP33.06■■■□□ 2.88
HDAC6-231ENST00000488905 ADAMTS12P58397 1594 aa33■■■□□ 2.87
HDAC6-231ENST00000488905 GRIN2AQ12879 1464 aa32.94■■■□□ 2.86
HDAC6-231ENST00000488905 TRHP20396 242 aaPredicted RBP32.9■■■□□ 2.86
HDAC6-231ENST00000488905 CEP170Q5SW79 1584 aa32.86■■■□□ 2.85
HDAC6-231ENST00000488905 ERICH3Q5RHP9 1530 aa32.84■■■□□ 2.85
HDAC6-231ENST00000488905 NUP160Q12769 1436 aa32.83■■■□□ 2.85
HDAC6-231ENST00000488905 FHAD1B1AJZ9 1412 aa32.8■■■□□ 2.84
HDAC6-231ENST00000488905 ERCC6L2Q5T890 1561 aa32.77■■■□□ 2.84
HDAC6-231ENST00000488905 SHROOM2Q13796 1616 aa32.75■■■□□ 2.83
HDAC6-231ENST00000488905 RUSC2Q8N2Y8 1516 aa32.55■■■□□ 2.8
HDAC6-231ENST00000488905 PRG4Q92954 1404 aaPredicted RBP32.46■■■□□ 2.79
HDAC6-231ENST00000488905 CUL7Q14999 1698 aa32.43■■■□□ 2.78
HDAC6-231ENST00000488905 JPH4Q96JJ6 628 aa32.37■■■□□ 2.77
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms