RNA–Protein interactions for RNA: ENST00000478095.1

HDAC6-222, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-222ENST00000478095 NISCHQ9Y2I1 1504 aa24.74■■□□□ 1.55
HDAC6-222ENST00000478095 AEBP2Q6ZN18 517 aaPredicted RBP24.71■■□□□ 1.55
HDAC6-222ENST00000478095 CHIC1Q5VXU3 224 aa23.93■■□□□ 1.42
HDAC6-222ENST00000478095 CCDC180Q9P1Z9 1646 aa21.86■■□□□ 1.09
HDAC6-222ENST00000478095 ABCC9O60706 1549 aa21.48■■□□□ 1.03
HDAC6-222ENST00000478095 SENP3Q9H4L4 574 aaPredicted RBP21.13■□□□□ 0.97
HDAC6-222ENST00000478095 PHF23Q9BUL5 403 aaPredicted RBP20.97■□□□□ 0.95
HDAC6-222ENST00000478095 DCAF8L2P0C7V8 631 aa20.75■□□□□ 0.91
HDAC6-222ENST00000478095 ZCCHC6Q5VYS8 1495 aaKnown RBP20.63■□□□□ 0.89
HDAC6-222ENST00000478095 RB1CC1Q8TDY2 1594 aa20.59■□□□□ 0.89
HDAC6-222ENST00000478095 NACADO15069 1562 aa20.58■□□□□ 0.88
HDAC6-222ENST00000478095 MYO15BQ96JP2 1530 aa20.47■□□□□ 0.87
HDAC6-222ENST00000478095 DCAF1Q9Y4B6 1507 aa20.42■□□□□ 0.86
HDAC6-222ENST00000478095 PABPN1Q86U42 306 aaKnown RBP eCLIP20.13■□□□□ 0.81
HDAC6-222ENST00000478095 SCRIBQ14160 1630 aa20.08■□□□□ 0.8
HDAC6-222ENST00000478095 UNC13AQ9UPW8 1703 aa20.05■□□□□ 0.8
HDAC6-222ENST00000478095 BICRAQ9NZM4 1560 aa19.99■□□□□ 0.79
HDAC6-222ENST00000478095 SHROOM4Q9ULL8 1493 aa19.74■□□□□ 0.75
HDAC6-222ENST00000478095 DNAJC5BQ9UF47 199 aa19.66■□□□□ 0.74
HDAC6-222ENST00000478095 FOXD1Q16676 465 aa19.58■□□□□ 0.72
HDAC6-222ENST00000478095 EIF4G1Q04637 1599 aaKnown RBP19.47■□□□□ 0.71
HDAC6-222ENST00000478095 PLPPR3Q6T4P5 718 aa19.37■□□□□ 0.69
HDAC6-222ENST00000478095 CC2D2AQ9P2K1 1620 aa19.36■□□□□ 0.69
HDAC6-222ENST00000478095 CECR2Q9BXF3 1484 aa19.32■□□□□ 0.68
HDAC6-222ENST00000478095 SMARCA4P51532 1647 aa19.16■□□□□ 0.66
HDAC6-222ENST00000478095 BAZ1AQ9NRL2 1556 aaPredicted RBP19.15■□□□□ 0.66
HDAC6-222ENST00000478095 MROH2BQ7Z745 1585 aa19.1■□□□□ 0.65
HDAC6-222ENST00000478095 ATAD2BQ9ULI0 1458 aa19.08■□□□□ 0.64
HDAC6-222ENST00000478095 NCAPD3P42695 1498 aa19.03■□□□□ 0.64
HDAC6-222ENST00000478095 SMARCA2P51531 1590 aa19.01■□□□□ 0.63
HDAC6-222ENST00000478095 PEG3Q9GZU2 1588 aa18.94■□□□□ 0.62
HDAC6-222ENST00000478095 BAZ1BQ9UIG0 1483 aaKnown RBP18.92■□□□□ 0.62
HDAC6-222ENST00000478095 RSF1Q96T23 1441 aaPredicted RBP18.91■□□□□ 0.62
HDAC6-222ENST00000478095 HMGXB3Q12766 1538 aa18.91■□□□□ 0.62
HDAC6-222ENST00000478095 WIZO95785 1651 aa18.86■□□□□ 0.61
HDAC6-222ENST00000478095 TOP2AP11388 1531 aaKnown RBP18.68■□□□□ 0.58
HDAC6-222ENST00000478095 ADRA2BP18089 450 aa18.63■□□□□ 0.57
HDAC6-222ENST00000478095 NESP48681 1621 aa18.6■□□□□ 0.57
HDAC6-222ENST00000478095 PPP6R1Q9UPN7 881 aa18.6■□□□□ 0.57
HDAC6-222ENST00000478095 SUPT5HO00267 1087 aaKnown RBP18.58■□□□□ 0.56
HDAC6-222ENST00000478095 CADPSQ9ULU8 1353 aa18.51■□□□□ 0.55
HDAC6-222ENST00000478095 ERCC6Q03468 1493 aa18.49■□□□□ 0.55
HDAC6-222ENST00000478095 CCDC88BA6NC98 1476 aa18.48■□□□□ 0.55
HDAC6-222ENST00000478095 LAMC3Q9Y6N6 1575 aa18.47■□□□□ 0.55
HDAC6-222ENST00000478095 PIAS4Q8N2W9 510 aaPredicted RBP18.47■□□□□ 0.55
HDAC6-222ENST00000478095 PDS5BQ9NTI5 1447 aa18.4■□□□□ 0.54
HDAC6-222ENST00000478095 CFTRP13569 1480 aa18.39■□□□□ 0.54
HDAC6-222ENST00000478095 FANCD2Q9BXW9 1451 aa18.3■□□□□ 0.52
HDAC6-222ENST00000478095 KIF21AQ7Z4S6 1674 aa18.29■□□□□ 0.52
HDAC6-222ENST00000478095 CEP164Q9UPV0 1460 aa18.26■□□□□ 0.51
HDAC6-222ENST00000478095 THOC2Q8NI27 1593 aaKnown RBP18.24■□□□□ 0.51
HDAC6-222ENST00000478095 MSH5O43196 834 aa18.23■□□□□ 0.51
HDAC6-222ENST00000478095 MRC2Q9UBG0 1479 aa18.21■□□□□ 0.51
HDAC6-222ENST00000478095 CUX2O14529 1486 aa18.2■□□□□ 0.5
HDAC6-222ENST00000478095 WDR62O43379 1518 aa18.13■□□□□ 0.49
HDAC6-222ENST00000478095 URB2Q14146 1524 aaKnown RBP18.12■□□□□ 0.49
HDAC6-222ENST00000478095 PRDM2Q13029 1718 aa18.11■□□□□ 0.49
HDAC6-222ENST00000478095 TOPBP1Q92547 1522 aa18■□□□□ 0.47
HDAC6-222ENST00000478095 DNMBPQ6XZF7 1577 aa17.96■□□□□ 0.47
HDAC6-222ENST00000478095 ABCC8Q09428 1581 aa17.95■□□□□ 0.46
HDAC6-222ENST00000478095 CUX1P39880 1505 aa17.91■□□□□ 0.46
HDAC6-222ENST00000478095 POLA1P09884 1462 aaPredicted RBP17.87■□□□□ 0.45
HDAC6-222ENST00000478095 IFT140Q96RY7 1462 aa17.87■□□□□ 0.45
HDAC6-222ENST00000478095 FGD5Q6ZNL6 1462 aa17.84■□□□□ 0.45
HDAC6-222ENST00000478095 WRNQ14191 1432 aaPredicted RBP eCLIP17.83■□□□□ 0.45
HDAC6-222ENST00000478095 ZNF608Q9ULD9 1512 aaPredicted RBP17.82■□□□□ 0.44
HDAC6-222ENST00000478095 RAD54L2Q9Y4B4 1467 aa17.82■□□□□ 0.44
HDAC6-222ENST00000478095 SOGA1O94964 1423 aa17.8■□□□□ 0.44
HDAC6-222ENST00000478095 SYNJ1O43426 1573 aa17.77■□□□□ 0.44
HDAC6-222ENST00000478095 TARBP1Q13395 1621 aaKnown RBP17.76■□□□□ 0.43
HDAC6-222ENST00000478095 TDRD9Q8NDG6 1382 aaKnown RBP17.73■□□□□ 0.43
HDAC6-222ENST00000478095 AQRO60306 1485 aaKnown RBP eCLIP17.73■□□□□ 0.433e-11■■■■□ 21.1
HDAC6-222ENST00000478095 TOP2BQ02880 1626 aa17.72■□□□□ 0.43
HDAC6-222ENST00000478095 EIF4G3O43432 1585 aaKnown RBP17.7■□□□□ 0.42
HDAC6-222ENST00000478095 BIVM-ERCC5R4GMW8 1640 aa17.7■□□□□ 0.42
HDAC6-222ENST00000478095 ABCA10Q8WWZ4 1543 aa17.64■□□□□ 0.41
HDAC6-222ENST00000478095 WDR97A6NE52 1622 aa17.6■□□□□ 0.41
HDAC6-222ENST00000478095 DNAJC5Q9H3Z4 198 aa17.59■□□□□ 0.41
HDAC6-222ENST00000478095 GAPVD1Q14C86 1478 aa17.58■□□□□ 0.41
HDAC6-222ENST00000478095 GRIN2BQ13224 1484 aa17.56■□□□□ 0.4
HDAC6-222ENST00000478095 SNAPC4Q5SXM2 1469 aa17.56■□□□□ 0.4
HDAC6-222ENST00000478095 ABCA5Q8WWZ7 1642 aa17.54■□□□□ 0.4
HDAC6-222ENST00000478095 FBLN2P98095 1184 aa17.54■□□□□ 0.4
HDAC6-222ENST00000478095 OSCARQ8IYS5 282 aa17.51■□□□□ 0.39
HDAC6-222ENST00000478095 MAGI1Q96QZ7 1491 aaPredicted RBP17.5■□□□□ 0.39
HDAC6-222ENST00000478095 TRIM41Q8WV44 630 aa17.49■□□□□ 0.39
HDAC6-222ENST00000478095 CHMP7Q8WUX9 453 aaPredicted RBP17.47■□□□□ 0.39
HDAC6-222ENST00000478095 PBRM1Q86U86 1689 aa17.46■□□□□ 0.39
HDAC6-222ENST00000478095 KIF27Q86VH2 1401 aa17.45■□□□□ 0.38
HDAC6-222ENST00000478095 SYNJ2O15056 1496 aa17.44■□□□□ 0.38
HDAC6-222ENST00000478095 ERICH3Q5RHP9 1530 aa17.42■□□□□ 0.38
HDAC6-222ENST00000478095 CHD1O14646 1710 aa17.41■□□□□ 0.38
HDAC6-222ENST00000478095 ADAMTS12P58397 1594 aa17.39■□□□□ 0.37
HDAC6-222ENST00000478095 FHAD1B1AJZ9 1412 aa17.38■□□□□ 0.37
HDAC6-222ENST00000478095 IGF1RP08069 1367 aa17.38■□□□□ 0.37
HDAC6-222ENST00000478095 GRIN2AQ12879 1464 aa17.35■□□□□ 0.37
HDAC6-222ENST00000478095 RUSC2Q8N2Y8 1516 aa17.35■□□□□ 0.37
HDAC6-222ENST00000478095 CARMIL1Q5VZK9 1371 aa17.28■□□□□ 0.36
HDAC6-222ENST00000478095 CLASP1Q7Z460 1538 aa17.27■□□□□ 0.36
HDAC6-222ENST00000478095 NUP160Q12769 1436 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms