Protein–RNA interactions for Protein: Q9NRR5

UBQLN4, Ubiquilin-4, humanhuman

Predictions only

Length 601 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN4Q9NRR5 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
UBQLN4Q9NRR5 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
UBQLN4Q9NRR5 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
UBQLN4Q9NRR5 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.31■□□□□ 0.52
UBQLN4Q9NRR5 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.31■□□□□ 0.52
UBQLN4Q9NRR5 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.31■□□□□ 0.52
UBQLN4Q9NRR5 EMC9-206ENST00000560403 872 ntTSL 2 BASIC18.31■□□□□ 0.52
UBQLN4Q9NRR5 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
UBQLN4Q9NRR5 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
UBQLN4Q9NRR5 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.31■□□□□ 0.52
UBQLN4Q9NRR5 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
UBQLN4Q9NRR5 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
UBQLN4Q9NRR5 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
UBQLN4Q9NRR5 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
UBQLN4Q9NRR5 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
UBQLN4Q9NRR5 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
UBQLN4Q9NRR5 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.3■□□□□ 0.52
UBQLN4Q9NRR5 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
UBQLN4Q9NRR5 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
UBQLN4Q9NRR5 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
UBQLN4Q9NRR5 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.3■□□□□ 0.52
UBQLN4Q9NRR5 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
UBQLN4Q9NRR5 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC18.3■□□□□ 0.52
UBQLN4Q9NRR5 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
UBQLN4Q9NRR5 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
UBQLN4Q9NRR5 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC18.3■□□□□ 0.52
UBQLN4Q9NRR5 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
UBQLN4Q9NRR5 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
UBQLN4Q9NRR5 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
UBQLN4Q9NRR5 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.3■□□□□ 0.52
UBQLN4Q9NRR5 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
UBQLN4Q9NRR5 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
UBQLN4Q9NRR5 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
UBQLN4Q9NRR5 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
UBQLN4Q9NRR5 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC18.29■□□□□ 0.52
UBQLN4Q9NRR5 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.29■□□□□ 0.52
UBQLN4Q9NRR5 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
UBQLN4Q9NRR5 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
UBQLN4Q9NRR5 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
UBQLN4Q9NRR5 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
UBQLN4Q9NRR5 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.29■□□□□ 0.52
UBQLN4Q9NRR5 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.29■□□□□ 0.52
UBQLN4Q9NRR5 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.29■□□□□ 0.52
UBQLN4Q9NRR5 PNMA6B-201ENST00000538162 1200 ntBASIC18.29■□□□□ 0.52
UBQLN4Q9NRR5 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.29■□□□□ 0.52
UBQLN4Q9NRR5 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
UBQLN4Q9NRR5 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.29■□□□□ 0.52
UBQLN4Q9NRR5 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
UBQLN4Q9NRR5 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
UBQLN4Q9NRR5 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.29■□□□□ 0.52
UBQLN4Q9NRR5 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
UBQLN4Q9NRR5 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
UBQLN4Q9NRR5 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
UBQLN4Q9NRR5 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
UBQLN4Q9NRR5 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
UBQLN4Q9NRR5 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
UBQLN4Q9NRR5 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.28■□□□□ 0.52
UBQLN4Q9NRR5 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
UBQLN4Q9NRR5 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.28■□□□□ 0.52
UBQLN4Q9NRR5 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.28■□□□□ 0.52
UBQLN4Q9NRR5 TMEM179-206ENST00000616017 1645 ntBASIC18.28■□□□□ 0.52
UBQLN4Q9NRR5 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
UBQLN4Q9NRR5 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
UBQLN4Q9NRR5 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.28■□□□□ 0.52
UBQLN4Q9NRR5 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.28■□□□□ 0.52
UBQLN4Q9NRR5 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
UBQLN4Q9NRR5 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
UBQLN4Q9NRR5 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
UBQLN4Q9NRR5 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
UBQLN4Q9NRR5 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
UBQLN4Q9NRR5 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
UBQLN4Q9NRR5 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
UBQLN4Q9NRR5 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
UBQLN4Q9NRR5 PHGDH-210ENST00000641115 1638 ntBASIC18.27■□□□□ 0.52
UBQLN4Q9NRR5 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
UBQLN4Q9NRR5 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
UBQLN4Q9NRR5 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
UBQLN4Q9NRR5 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
UBQLN4Q9NRR5 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.27■□□□□ 0.52
UBQLN4Q9NRR5 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
UBQLN4Q9NRR5 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.27■□□□□ 0.52
UBQLN4Q9NRR5 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.27■□□□□ 0.52
UBQLN4Q9NRR5 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.27■□□□□ 0.52
UBQLN4Q9NRR5 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.27■□□□□ 0.52
UBQLN4Q9NRR5 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
UBQLN4Q9NRR5 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
UBQLN4Q9NRR5 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.27■□□□□ 0.51
UBQLN4Q9NRR5 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
UBQLN4Q9NRR5 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
UBQLN4Q9NRR5 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
UBQLN4Q9NRR5 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
UBQLN4Q9NRR5 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.26■□□□□ 0.51
UBQLN4Q9NRR5 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
UBQLN4Q9NRR5 AP001271.2-201ENST00000624018 1556 ntBASIC18.26■□□□□ 0.51
UBQLN4Q9NRR5 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.26■□□□□ 0.51
UBQLN4Q9NRR5 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
UBQLN4Q9NRR5 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
UBQLN4Q9NRR5 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
UBQLN4Q9NRR5 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
UBQLN4Q9NRR5 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms