RNA–Protein interactions for RNA: ENST00000578993.5

LIMD2-206, Transcript of LIM domain containing 2, humanhuman

TSL 3 BASIC

Gene LIMD2, Length 602 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2-206ENST00000578993 NISCHQ9Y2I1 1504 aa50.56■■■■■ 5.68
LIMD2-206ENST00000578993 CCDC180Q9P1Z9 1646 aa45.22■■■■■ 4.83
LIMD2-206ENST00000578993 ABCC9O60706 1549 aa44.76■■■■■ 4.76
LIMD2-206ENST00000578993 RB1CC1Q8TDY2 1594 aa42.78■■■■■ 4.44
LIMD2-206ENST00000578993 NACADO15069 1562 aa42.6■■■■■ 4.41
LIMD2-206ENST00000578993 DCAF8L2P0C7V8 631 aa42.37■■■■■ 4.37
LIMD2-206ENST00000578993 MYO15BQ96JP2 1530 aa42.15■■■■■ 4.34
LIMD2-206ENST00000578993 UNC13AQ9UPW8 1703 aa42■■■■■ 4.31
LIMD2-206ENST00000578993 ZCCHC6Q5VYS8 1495 aaKnown RBP42■■■■■ 4.31
LIMD2-206ENST00000578993 DCAF1Q9Y4B6 1507 aa41.78■■■■■ 4.28
LIMD2-206ENST00000578993 PABPN1Q86U42 306 aaKnown RBP eCLIP41.72■■■■■ 4.27
LIMD2-206ENST00000578993 DNAJC5BQ9UF47 199 aa41.68■■■■■ 4.26
LIMD2-206ENST00000578993 BICRAQ9NZM4 1560 aa41.63■■■■■ 4.26
LIMD2-206ENST00000578993 SCRIBQ14160 1630 aa41.22■■■■■ 4.19
LIMD2-206ENST00000578993 SHROOM4Q9ULL8 1493 aa40.97■■■■■ 4.15
LIMD2-206ENST00000578993 CC2D2AQ9P2K1 1620 aa40.51■■■■■ 4.08
LIMD2-206ENST00000578993 EIF4G1Q04637 1599 aaKnown RBP40.51■■■■■ 4.08
LIMD2-206ENST00000578993 CECR2Q9BXF3 1484 aa40.26■■■■■ 4.04
LIMD2-206ENST00000578993 SMARCA4P51532 1647 aa39.38■■■■□ 3.89
LIMD2-206ENST00000578993 NCAPD3P42695 1498 aa39.32■■■■□ 3.89
LIMD2-206ENST00000578993 ATAD2BQ9ULI0 1458 aa39.27■■■■□ 3.88
LIMD2-206ENST00000578993 BAZ1AQ9NRL2 1556 aaPredicted RBP39.18■■■■□ 3.86
LIMD2-206ENST00000578993 SMARCA2P51531 1590 aa39.16■■■■□ 3.86
LIMD2-206ENST00000578993 HMGXB3Q12766 1538 aa39.09■■■■□ 3.85
LIMD2-206ENST00000578993 MROH2BQ7Z745 1585 aa38.99■■■■□ 3.83
LIMD2-206ENST00000578993 PEG3Q9GZU2 1588 aa38.99■■■■□ 3.83
LIMD2-206ENST00000578993 BAZ1BQ9UIG0 1483 aaKnown RBP38.88■■■■□ 3.81
LIMD2-206ENST00000578993 NESP48681 1621 aa38.63■■■■□ 3.77
LIMD2-206ENST00000578993 WIZO95785 1651 aa38.58■■■■□ 3.77
LIMD2-206ENST00000578993 ERCC6Q03468 1493 aa38.55■■■■□ 3.76
LIMD2-206ENST00000578993 LAMC3Q9Y6N6 1575 aa38.37■■■■□ 3.73
LIMD2-206ENST00000578993 CUX2O14529 1486 aa38.37■■■■□ 3.73
LIMD2-206ENST00000578993 RSF1Q96T23 1441 aaPredicted RBP38.3■■■■□ 3.72
LIMD2-206ENST00000578993 KIF21AQ7Z4S6 1674 aa38.2■■■■□ 3.71
LIMD2-206ENST00000578993 THOC2Q8NI27 1593 aaKnown RBP38.18■■■■□ 3.7
LIMD2-206ENST00000578993 CADPSQ9ULU8 1353 aa38.12■■■■□ 3.69
LIMD2-206ENST00000578993 PDS5BQ9NTI5 1447 aa38.06■■■■□ 3.68
LIMD2-206ENST00000578993 TOP2AP11388 1531 aaKnown RBP38.05■■■■□ 3.68
LIMD2-206ENST00000578993 DNAJC5Q9H3Z4 198 aa37.88■■■■□ 3.65
LIMD2-206ENST00000578993 CFTRP13569 1480 aa37.81■■■■□ 3.64
LIMD2-206ENST00000578993 MRC2Q9UBG0 1479 aa37.77■■■■□ 3.64
LIMD2-206ENST00000578993 FANCD2Q9BXW9 1451 aa37.71■■■■□ 3.63
LIMD2-206ENST00000578993 WDR62O43379 1518 aa37.7■■■■□ 3.63
LIMD2-206ENST00000578993 CEP164Q9UPV0 1460 aa37.69■■■■□ 3.62
LIMD2-206ENST00000578993 CCDC88BA6NC98 1476 aa37.63■■■■□ 3.61
LIMD2-206ENST00000578993 PRDM2Q13029 1718 aa37.57■■■■□ 3.6
LIMD2-206ENST00000578993 URB2Q14146 1524 aaKnown RBP37.42■■■■□ 3.58
LIMD2-206ENST00000578993 TOPBP1Q92547 1522 aa37.06■■■■□ 3.52
LIMD2-206ENST00000578993 DNMBPQ6XZF7 1577 aa36.96■■■■□ 3.51
LIMD2-206ENST00000578993 ABCC8Q09428 1581 aa36.93■■■■□ 3.5
LIMD2-206ENST00000578993 IFT140Q96RY7 1462 aa36.91■■■■□ 3.5
LIMD2-206ENST00000578993 ZNF608Q9ULD9 1512 aaPredicted RBP36.89■■■■□ 3.5
LIMD2-206ENST00000578993 SUPT5HO00267 1087 aaKnown RBP36.83■■■■□ 3.49
LIMD2-206ENST00000578993 TARBP1Q13395 1621 aaKnown RBP36.76■■■■□ 3.48
LIMD2-206ENST00000578993 EIF4G3O43432 1585 aaKnown RBP36.71■■■■□ 3.47
LIMD2-206ENST00000578993 POLA1P09884 1462 aaPredicted RBP36.71■■■■□ 3.47
LIMD2-206ENST00000578993 OSCARQ8IYS5 282 aa36.64■■■■□ 3.46
LIMD2-206ENST00000578993 CUX1P39880 1505 aa36.62■■■■□ 3.45
LIMD2-206ENST00000578993 AQRO60306 1485 aaKnown RBP eCLIP36.58■■■■□ 3.45
LIMD2-206ENST00000578993 RAD54L2Q9Y4B4 1467 aa36.58■■■■□ 3.45
LIMD2-206ENST00000578993 FGD5Q6ZNL6 1462 aa36.54■■■■□ 3.44
LIMD2-206ENST00000578993 SOGA1O94964 1423 aa36.5■■■■□ 3.43
LIMD2-206ENST00000578993 CHD1O14646 1710 aa36.41■■■■□ 3.42
LIMD2-206ENST00000578993 TDRD9Q8NDG6 1382 aaKnown RBP36.4■■■■□ 3.42
LIMD2-206ENST00000578993 TRIM41Q8WV44 630 aa36.36■■■■□ 3.41
LIMD2-206ENST00000578993 WDR97A6NE52 1622 aa36.35■■■■□ 3.41
LIMD2-206ENST00000578993 RIMBP3CA6NJZ7 1639 aa36.26■■■■□ 3.39
LIMD2-206ENST00000578993 RIMBP3BA6NNM3 1639 aa36.26■■■■□ 3.39
LIMD2-206ENST00000578993 RIMBP3Q9UFD9 1639 aa36.26■■■■□ 3.39
LIMD2-206ENST00000578993 SNAPC4Q5SXM2 1469 aa36.21■■■■□ 3.39
LIMD2-206ENST00000578993 BIVM-ERCC5R4GMW8 1640 aa36.16■■■■□ 3.38
LIMD2-206ENST00000578993 FBLN2P98095 1184 aa36.15■■■■□ 3.38
LIMD2-206ENST00000578993 ARHGEF11O15085 1522 aa36.14■■■■□ 3.38
LIMD2-206ENST00000578993 PBRM1Q86U86 1689 aa36.14■■■■□ 3.38
LIMD2-206ENST00000578993 ABCA10Q8WWZ4 1543 aa36.13■■■■□ 3.38
LIMD2-206ENST00000578993 GRIN2BQ13224 1484 aa36.13■■■■□ 3.37
LIMD2-206ENST00000578993 SYNJ1O43426 1573 aa36.13■■■■□ 3.37
LIMD2-206ENST00000578993 TOP2BQ02880 1626 aa36.12■■■■□ 3.37
LIMD2-206ENST00000578993 ABCA5Q8WWZ7 1642 aa36.11■■■■□ 3.37
LIMD2-206ENST00000578993 MAGI1Q96QZ7 1491 aaPredicted RBP36.1■■■■□ 3.37
LIMD2-206ENST00000578993 GAPVD1Q14C86 1478 aa36.08■■■■□ 3.37
LIMD2-206ENST00000578993 WRNQ14191 1432 aaPredicted RBP eCLIP36.08■■■■□ 3.37
LIMD2-206ENST00000578993 SYNJ2O15056 1496 aa35.98■■■■□ 3.35
LIMD2-206ENST00000578993 CLASP1Q7Z460 1538 aa35.96■■■■□ 3.35
LIMD2-206ENST00000578993 CHMP7Q8WUX9 453 aaPredicted RBP35.95■■■■□ 3.35
LIMD2-206ENST00000578993 ARAP1Q96P48 1450 aa35.83■■■■□ 3.33
LIMD2-206ENST00000578993 ADAMTS12P58397 1594 aa35.78■■■■□ 3.32
LIMD2-206ENST00000578993 CYB5RLQ6IPT4 315 aa35.78■■■■□ 3.32
LIMD2-206ENST00000578993 GRIN2AQ12879 1464 aa35.71■■■■□ 3.31
LIMD2-206ENST00000578993 ERICH3Q5RHP9 1530 aa35.68■■■■□ 3.3
LIMD2-206ENST00000578993 FHAD1B1AJZ9 1412 aa35.62■■■■□ 3.29
LIMD2-206ENST00000578993 CEP170Q5SW79 1584 aa35.61■■■■□ 3.29
LIMD2-206ENST00000578993 NUP160Q12769 1436 aa35.58■■■■□ 3.29
LIMD2-206ENST00000578993 ERCC6L2Q5T890 1561 aa35.47■■■■□ 3.27
LIMD2-206ENST00000578993 SHROOM2Q13796 1616 aa35.43■■■■□ 3.26
LIMD2-206ENST00000578993 KIF27Q86VH2 1401 aa35.33■■■■□ 3.25
LIMD2-206ENST00000578993 IGF1RP08069 1367 aa35.33■■■■□ 3.25
LIMD2-206ENST00000578993 RUSC2Q8N2Y8 1516 aa35.27■■■■□ 3.24
LIMD2-206ENST00000578993 CUL7Q14999 1698 aa35.27■■■■□ 3.24
LIMD2-206ENST00000578993 TRHP20396 242 aaPredicted RBP35.19■■■■□ 3.22
Retrieved 100 of 20,778 RNA–protein pairs in 120.6 ms